Wall clock time and date at job start Mon Mar 30 2020 02:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99909 * 2 1 4 4 H 1.48509 * 109.47008 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47042 * 299.99619 * 3 2 1 6 6 H 1.48493 * 109.47183 * 60.00203 * 3 2 1 7 7 C 1.37875 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00362 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99913 * 0.02562 * 7 2 1 10 10 N 1.46894 * 109.47001 * 179.97438 * 9 7 2 11 11 C 1.46900 * 110.99757 * 179.97438 * 10 9 7 12 12 H 1.08995 * 110.60606 * 328.02053 * 11 10 9 13 13 C 1.55113 * 110.81644 * 91.14332 * 11 10 9 14 14 C 1.54919 * 101.63857 * 153.81656 * 13 11 10 15 15 N 1.49589 * 105.04758 * 322.59497 * 14 13 11 16 16 C 1.47864 * 109.89894 * 267.09209 * 15 14 13 17 17 C 1.55344 * 104.95564 * 140.95580 * 16 15 14 18 18 C 1.55139 * 101.43649 * 322.96702 * 17 16 15 19 19 C 1.47865 * 107.40674 * 24.84121 * 15 14 13 20 20 H 1.08993 * 110.84561 * 119.61982 * 19 15 14 21 21 H 0.96995 * 119.99664 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.46916 * 59.99481 * 9 7 2 23 23 H 1.08999 * 109.46656 * 299.99569 * 9 7 2 24 24 H 1.00905 * 111.00301 * 303.94883 * 10 9 7 25 25 H 1.09000 * 110.99307 * 271.90361 * 13 11 10 26 26 H 1.09001 * 110.99348 * 35.69588 * 13 11 10 27 27 H 1.09003 * 110.38721 * 81.12634 * 14 13 11 28 28 H 1.08998 * 110.39201 * 203.51999 * 14 13 11 29 29 H 1.08993 * 110.35514 * 259.81084 * 16 15 14 30 30 H 1.09002 * 110.35224 * 21.99322 * 16 15 14 31 31 H 1.08994 * 111.17875 * 204.90723 * 17 16 15 32 32 H 1.09006 * 111.00695 * 80.94385 * 17 16 15 33 33 H 1.09002 * 110.70469 * 277.36332 * 18 17 16 34 34 H 1.09005 * 110.70298 * 154.30581 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5054 -4.9070 0.0011 12 1 0.5619 -4.8315 0.5418 13 6 1.2675 -5.4058 -1.4482 14 6 1.1929 -6.9395 -1.2427 15 7 2.2095 -7.2397 -0.1872 16 6 3.5012 -7.5877 -0.8170 17 6 4.5783 -6.9208 0.0821 18 6 3.8745 -5.5946 0.4729 19 6 2.3955 -6.0088 0.6108 20 1 2.1373 -6.1812 1.6556 21 1 -0.4849 0.8400 0.0004 22 1 0.6247 -2.5571 -0.8896 23 1 0.6242 -2.5567 0.8903 24 1 2.8405 -3.5487 -0.7809 25 1 0.3290 -5.0189 -1.8453 26 1 2.1028 -5.1382 -2.0953 27 1 0.2003 -7.2285 -0.8971 28 1 1.4401 -7.4592 -2.1683 29 1 3.6368 -8.6691 -0.8314 30 1 3.5496 -7.1867 -1.8294 31 1 5.4934 -6.7272 -0.4773 32 1 4.7825 -7.5288 0.9635 33 1 3.9942 -4.8487 -0.3130 34 1 4.2595 -5.2188 1.4209 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049568146.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:48 Heat of formation + Delta-G solvation = 5.552858 kcal Electronic energy + Delta-G solvation = -14298.022196 eV Core-core repulsion = 12037.261539 eV Total energy + Delta-G solvation = -2260.760657 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.89821 -35.13379 -33.06345 -32.22594 -29.53818 -27.79052 -26.22542 -24.17859 -21.92018 -21.15877 -20.53815 -18.88672 -16.76952 -15.93379 -14.97307 -14.92353 -14.59234 -14.00736 -13.44566 -13.14846 -12.86925 -12.23438 -11.94175 -11.85122 -11.43463 -11.28969 -11.24632 -10.95021 -10.85281 -10.63376 -10.62872 -10.20710 -10.09374 -9.87774 -9.19685 -8.51564 -8.27968 -7.28016 -6.05260 -4.07335 3.29389 3.36726 3.41552 4.19787 4.41612 4.71224 4.82838 5.08245 5.27485 5.27946 5.31233 5.34853 5.55748 5.61756 5.69743 5.75652 5.89262 5.99148 6.02824 6.07760 6.24092 6.33079 6.46776 6.51591 6.67469 7.04255 7.16498 7.25874 7.41130 7.76842 8.10898 8.34827 8.57908 9.02182 9.57824 11.05860 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.053093 B = 0.007157 C = 0.006608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.249214 B = 3911.547475 C = 4236.354029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.514 4.514 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.675 5.675 11 C 0.075 3.925 12 H 0.080 0.920 13 C -0.179 4.179 14 C 0.035 3.965 15 N -0.512 5.512 16 C 0.034 3.966 17 C -0.137 4.137 18 C -0.119 4.119 19 C 0.066 3.934 20 H 0.088 0.912 21 H 0.261 0.739 22 H -0.014 1.014 23 H 0.028 0.972 24 H 0.329 0.671 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.045 0.955 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.249 -12.782 -2.206 13.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.553 4.553 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.305 5.305 11 C -0.037 4.037 12 H 0.098 0.902 13 C -0.220 4.220 14 C -0.093 4.093 15 N -0.236 5.236 16 C -0.094 4.094 17 C -0.175 4.175 18 C -0.157 4.157 19 C -0.043 4.043 20 H 0.106 0.894 21 H 0.070 0.930 22 H 0.004 0.996 23 H 0.046 0.954 24 H 0.147 0.853 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.996 -13.093 -1.170 14.062 hybrid contribution 0.207 1.623 -1.489 2.212 sum 5.203 -11.469 -2.659 12.872 Atomic orbital electron populations 1.69973 1.06089 1.26691 1.50966 1.24991 0.94870 0.99383 0.95336 0.86437 0.80052 0.83370 0.77524 1.19671 1.21112 1.20951 1.21225 0.93521 0.90279 1.50256 0.91967 1.19590 0.90608 0.87326 0.95739 1.60746 1.20527 1.00709 1.48556 1.22733 0.96751 0.91028 0.93208 0.90166 1.23734 1.02309 0.96523 0.99398 1.23432 0.97119 0.94665 0.94100 1.66022 1.06928 1.31637 1.19002 1.23227 0.89393 1.00148 0.96662 1.22884 0.97613 0.97457 0.99526 1.22636 0.94066 0.96083 1.02947 1.23022 0.95566 0.87586 0.98138 0.89444 0.92956 0.99601 0.95428 0.85284 0.90859 0.91683 0.90357 0.91719 0.90879 0.93682 0.91350 0.91248 0.90466 0.90869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.51 -14.54 9.32 -34.44 -0.32 -14.86 16 8 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 9 C 0.19 5.05 5.31 -4.97 -0.03 5.02 16 10 N -0.68 -14.19 5.15 -106.15 -0.55 -14.73 16 11 C 0.08 1.35 3.06 -65.96 -0.20 1.15 16 12 H 0.08 1.54 7.82 -51.93 -0.41 1.14 16 13 C -0.18 -2.81 6.62 -24.60 -0.16 -2.97 16 14 C 0.04 0.48 6.57 -1.31 -0.01 0.47 16 15 N -0.51 -7.36 5.82 -218.47 -1.27 -8.64 16 16 C 0.03 0.42 6.57 -2.05 -0.01 0.41 16 17 C -0.14 -1.66 7.11 -24.36 -0.17 -1.84 16 18 C -0.12 -1.75 5.81 -24.97 -0.14 -1.90 16 19 C 0.07 1.04 4.03 -65.92 -0.27 0.77 16 20 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 21 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 22 H -0.01 -0.38 8.14 -51.93 -0.42 -0.81 16 23 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 24 H 0.33 6.68 6.75 -39.29 -0.27 6.42 16 25 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.06 1.02 7.77 -51.93 -0.40 0.62 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.06 0.78 7.60 -51.93 -0.39 0.39 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.04 0.56 7.53 -51.93 -0.39 0.16 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.08 1.23 5.89 -51.93 -0.31 0.92 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 267.69 15.07 4.03 4.03 Total: -1.00 -29.21 267.69 -9.00 -38.21 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -5.51 Total: 2.85 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -1.42 Total: -12.25 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: -1.08 Total: -49.52 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.21 -9.00 -38.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049568146.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.758 kcal (2) G-P(sol) polarization free energy of solvation -29.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds