Wall clock time and date at job start Mon Mar 30 2020 02:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 119.99728 * 2 1 4 4 H 1.48502 * 109.47081 * 274.62294 * 3 2 1 5 5 H 1.48500 * 109.47364 * 34.62325 * 3 2 1 6 6 H 1.48502 * 109.47223 * 154.62353 * 3 2 1 7 7 C 1.38815 * 120.00673 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00402 * 170.97492 * 7 2 1 9 9 N 1.36939 * 119.99557 * 350.97410 * 7 2 1 10 10 C 1.47463 * 125.62878 * 344.64567 * 9 7 2 11 11 C 1.54911 * 104.81060 * 204.06564 * 10 9 7 12 12 C 1.55151 * 101.61784 * 323.04432 * 11 10 9 13 13 C 1.47018 * 125.64488 * 164.63892 * 9 7 2 14 14 H 1.09004 * 110.01262 * 59.49184 * 13 9 7 15 15 C 1.53002 * 109.88590 * 298.39265 * 13 9 7 16 16 H 1.08990 * 110.33521 * 302.99382 * 15 13 9 17 17 C 1.54903 * 110.36963 * 65.36723 * 15 13 9 18 18 C 1.55144 * 101.65139 * 155.89881 * 17 15 13 19 19 C 1.54319 * 103.01852 * 324.34437 * 18 17 15 20 20 N 1.47441 * 107.23408 * 22.28507 * 19 18 17 21 21 H 0.96997 * 120.00566 * 359.97438 * 1 2 3 22 22 H 1.09001 * 110.35460 * 85.25306 * 10 9 7 23 23 H 1.09002 * 110.40771 * 322.91239 * 10 9 7 24 24 H 1.08996 * 111.00976 * 204.94613 * 11 10 9 25 25 H 1.09004 * 111.00157 * 81.13311 * 11 10 9 26 26 H 1.09004 * 110.72554 * 153.84150 * 12 11 10 27 27 H 1.09004 * 110.72174 * 276.93881 * 12 11 10 28 28 H 1.08997 * 110.99329 * 273.98713 * 17 15 13 29 29 H 1.09002 * 110.99438 * 37.80877 * 17 15 13 30 30 H 1.09007 * 110.70493 * 205.96273 * 18 17 15 31 31 H 1.09001 * 110.85270 * 82.80062 * 18 17 15 32 32 H 1.08994 * 109.88661 * 262.87855 * 19 18 17 33 33 H 1.08994 * 109.88461 * 141.69048 * 19 18 17 34 34 H 1.00893 * 110.99949 * 123.25488 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.3998 2.1029 -1.3955 5 1 1.4998 2.6226 0.7955 6 1 3.5931 1.4141 0.6000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0803 -1.2078 -0.1473 9 7 1.3384 -2.3808 0.1850 10 6 -0.0348 -2.5140 0.7057 11 6 -0.0972 -3.9448 1.2963 12 6 0.7713 -4.7385 0.2850 13 6 1.8666 -3.7224 -0.1021 14 1 2.7653 -3.9036 0.4875 15 6 2.1885 -3.8470 -1.5927 16 1 1.3021 -3.6357 -2.1906 17 6 3.3424 -2.8878 -1.9771 18 6 3.9162 -3.5789 -3.2420 19 6 3.7594 -5.0798 -2.9194 20 7 2.7042 -5.1989 -1.8967 21 1 -0.4851 0.8400 0.0004 22 1 -0.7587 -2.4052 -0.1018 23 1 -0.2195 -1.7738 1.4843 24 1 -1.1213 -4.3179 1.3092 25 1 0.3398 -3.9748 2.2945 26 1 1.2100 -5.6165 0.7590 27 1 0.1828 -5.0260 -0.5864 28 1 2.9618 -1.8942 -2.2137 29 1 4.0902 -2.8394 -1.1855 30 1 4.9666 -3.3217 -3.3788 31 1 3.3373 -3.3121 -4.1262 32 1 4.6980 -5.4757 -2.5317 33 1 3.4681 -5.6236 -3.8179 34 1 1.9626 -5.8064 -2.2113 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051360042.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:59 Heat of formation + Delta-G solvation = -0.503437 kcal Electronic energy + Delta-G solvation = -14767.506477 eV Core-core repulsion = 12506.483199 eV Total energy + Delta-G solvation = -2261.023278 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.16225 -37.96750 -34.50014 -31.67618 -31.22302 -30.40843 -27.37056 -26.42275 -22.47982 -22.30920 -21.24114 -20.52186 -18.74368 -17.89466 -16.66935 -16.31475 -15.87992 -15.52177 -14.41569 -14.04184 -13.81715 -13.64714 -13.47260 -13.31230 -13.00485 -12.76732 -12.67119 -12.59657 -12.04916 -11.88849 -11.69105 -11.61084 -11.42320 -11.35564 -11.02556 -10.60995 -9.32973 -8.72803 -7.83561 -5.17688 1.44367 1.45534 1.54713 2.50989 3.21201 3.40156 3.82047 3.94145 3.96905 4.14048 4.20819 4.30505 4.35637 4.47335 4.70038 4.72214 4.86446 4.91950 4.97505 5.04546 5.12793 5.23469 5.27300 5.35827 5.39648 5.50859 5.60999 5.66732 5.77790 6.04541 6.28810 6.61821 7.14247 7.83995 8.53001 9.29466 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.027485 B = 0.013065 C = 0.009370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.477937 B = 2142.594348 C = 2987.634584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.065 4.065 3 Si 0.964 3.036 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.269 1.269 7 C -0.220 4.220 8 H 0.079 0.921 9 N -0.612 5.612 10 C 0.178 3.822 11 C -0.137 4.137 12 C -0.104 4.104 13 C 0.170 3.830 14 H 0.027 0.973 15 C 0.081 3.919 16 H 0.022 0.978 17 C -0.112 4.112 18 C -0.142 4.142 19 C 0.051 3.949 20 N -0.679 5.679 21 H 0.245 0.755 22 H -0.003 1.003 23 H 0.021 0.979 24 H 0.082 0.918 25 H 0.064 0.936 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.591 -10.286 -3.857 11.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.258 4.258 3 Si 0.793 3.207 4 H -0.215 1.215 5 H -0.223 1.223 6 H -0.194 1.194 7 C -0.350 4.350 8 H 0.096 0.904 9 N -0.337 5.337 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.142 4.142 13 C 0.063 3.937 14 H 0.045 0.955 15 C -0.030 4.030 16 H 0.040 0.960 17 C -0.150 4.150 18 C -0.180 4.180 19 C -0.078 4.078 20 N -0.310 5.310 21 H 0.054 0.946 22 H 0.015 0.985 23 H 0.040 0.960 24 H 0.100 0.900 25 H 0.082 0.918 26 H 0.105 0.895 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.005 -10.125 -3.301 11.767 hybrid contribution -0.469 1.661 -0.842 1.920 sum 4.537 -8.465 -4.143 10.459 Atomic orbital electron populations 1.70144 1.06327 1.25097 1.58238 1.25608 0.96295 1.00789 1.03146 0.85276 0.78053 0.80129 0.77255 1.21498 1.22262 1.19409 1.19313 0.91211 0.83696 1.40775 0.90372 1.44845 1.13584 1.01218 1.74006 1.21132 0.85796 0.93253 0.94524 1.22890 1.00263 0.95783 0.98565 1.22413 0.96076 0.97120 0.98567 1.21005 0.95368 0.84869 0.92474 0.95470 1.22647 0.95150 0.87994 0.97228 0.96017 1.22567 0.96970 0.98243 0.97215 1.22852 1.01894 0.96091 0.97160 1.22602 0.96301 0.95204 0.93679 1.61728 1.14907 1.10586 1.43748 0.94607 0.98459 0.96002 0.89950 0.91772 0.89460 0.91674 0.92911 0.92607 0.89835 0.91847 0.90406 0.91410 0.84162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.87 10.89 21.65 0.24 -57.64 16 2 C -0.07 -3.74 5.39 84.86 0.46 -3.28 16 3 Si 0.96 46.31 29.56 68.60 2.03 48.34 16 4 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 5 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 7 C -0.22 -12.25 8.18 84.03 0.69 -11.56 16 8 H 0.08 4.22 6.48 -2.91 -0.02 4.20 16 9 N -0.61 -31.47 3.12 -668.14 -2.09 -33.55 16 10 C 0.18 8.94 5.36 86.85 0.47 9.41 16 11 C -0.14 -5.11 7.08 31.98 0.23 -4.89 16 12 C -0.10 -3.58 6.18 31.78 0.20 -3.38 16 13 C 0.17 7.09 2.98 45.35 0.14 7.23 16 14 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 15 C 0.08 3.07 2.83 45.38 0.13 3.20 16 16 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 17 C -0.11 -4.25 4.69 31.98 0.15 -4.10 16 18 C -0.14 -4.03 6.94 31.78 0.22 -3.81 16 19 C 0.05 1.28 7.58 86.65 0.66 1.94 16 20 N -0.68 -20.00 6.73 -482.48 -3.25 -23.25 16 21 H 0.24 14.57 8.31 -92.71 -0.77 13.80 16 22 H 0.00 -0.14 7.95 -2.39 -0.02 -0.16 16 23 H 0.02 1.22 7.30 -2.39 -0.02 1.20 16 24 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 25 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 26 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 27 H 0.06 2.12 7.86 -2.38 -0.02 2.10 16 28 H 0.05 2.33 7.03 -2.39 -0.02 2.32 16 29 H 0.06 2.21 7.69 -2.39 -0.02 2.19 16 30 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 31 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.34 8.72 8.91 -89.70 -0.80 7.92 16 Total: -1.00 -63.92 263.65 0.52 -63.40 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.27 Total: 11.94 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: 3.32 Total: -9.24 kcal Atomic # 7 Polarization: -109.34 SS G_CDS: -5.10 Total: -114.44 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -63.92 0.52 -63.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051360042.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.900 kcal (2) G-P(sol) polarization free energy of solvation -63.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds