Wall clock time and date at job start Mon Mar 30 2020 02:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00028 * 2 1 4 4 H 1.48501 * 109.47245 * 240.00505 * 3 2 1 5 5 H 1.48500 * 109.47358 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47436 * 120.00408 * 3 2 1 7 7 C 1.38810 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00184 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99891 * 0.02562 * 7 2 1 10 10 C 1.47422 * 125.65168 * 15.57854 * 9 7 2 11 11 C 1.54908 * 104.83721 * 155.83976 * 10 9 7 12 12 C 1.55153 * 101.57923 * 37.00981 * 11 10 9 13 13 C 1.47028 * 125.64917 * 195.54095 * 9 7 2 14 14 H 1.08996 * 109.88213 * 300.66423 * 13 9 7 15 15 C 1.52996 * 109.88010 * 61.67297 * 13 9 7 16 16 H 1.09000 * 110.33628 * 65.14224 * 15 13 9 17 17 C 1.54908 * 110.37313 * 187.39434 * 15 13 9 18 18 C 1.55431 * 101.52151 * 155.95069 * 17 15 13 19 19 C 1.54316 * 103.04595 * 324.36838 * 18 17 15 20 20 N 1.47441 * 107.23474 * 22.28572 * 19 18 17 21 21 H 0.96999 * 120.00095 * 359.97438 * 1 2 3 22 22 H 1.09001 * 110.36755 * 274.67894 * 10 9 7 23 23 H 1.09000 * 110.36730 * 36.99690 * 10 9 7 24 24 H 1.08994 * 111.00564 * 155.08269 * 11 10 9 25 25 H 1.09001 * 111.00020 * 278.89994 * 11 10 9 26 26 H 1.09004 * 110.71995 * 206.13875 * 12 11 10 27 27 H 1.09005 * 110.72459 * 82.86506 * 12 11 10 28 28 H 1.08997 * 110.99305 * 274.10346 * 17 15 13 29 29 H 1.08997 * 110.98662 * 37.92380 * 17 15 13 30 30 H 1.09001 * 110.69720 * 205.98053 * 18 17 15 31 31 H 1.08993 * 110.84432 * 82.82917 * 18 17 15 32 32 H 1.09000 * 109.89177 * 262.87435 * 19 18 17 33 33 H 1.09007 * 109.88758 * 141.69158 * 19 18 17 34 34 H 1.00893 * 111.00247 * 123.26027 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1038 1.6964 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1033 -2.5550 -0.3240 11 6 -0.2358 -4.0269 -0.7881 12 6 0.7624 -4.7433 0.1594 13 6 1.8938 -3.7059 0.3178 14 1 2.7086 -3.9346 -0.3691 15 6 2.4099 -3.7147 1.7581 16 1 1.5827 -3.5948 2.4577 17 6 3.1755 -5.0296 2.0486 18 6 4.1024 -4.5971 3.2189 19 6 4.4604 -3.1397 2.8594 20 7 3.4087 -2.6423 1.9536 21 1 -0.4850 0.8400 0.0004 22 1 -0.7149 -2.3798 0.5611 23 1 -0.3929 -1.8766 -1.1265 24 1 -1.2507 -4.3945 -0.6365 25 1 0.0658 -4.1368 -1.8297 26 1 1.1394 -5.6582 -0.2980 27 1 0.2963 -4.9557 1.1216 28 1 2.4916 -5.8189 2.3608 29 1 3.7593 -5.3410 1.1825 30 1 4.9982 -5.2174 3.2503 31 1 3.5720 -4.6403 4.1701 32 1 5.4274 -3.1083 2.3575 33 1 4.4895 -2.5313 3.7634 34 1 2.9769 -1.8091 2.3240 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051360044.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:05 Heat of formation + Delta-G solvation = 22.561912 kcal Electronic energy + Delta-G solvation = -14792.587747 eV Core-core repulsion = 12532.564658 eV Total energy + Delta-G solvation = -2260.023089 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.54477 -36.31305 -32.42182 -29.92563 -29.58146 -28.77378 -25.77199 -24.27275 -20.81466 -20.69317 -19.87576 -18.84026 -16.65735 -16.22563 -15.02968 -14.60713 -13.96390 -13.68745 -13.12245 -12.42097 -12.32413 -11.87305 -11.73110 -11.45632 -11.28931 -11.07934 -10.90810 -10.68494 -10.62401 -10.33593 -10.00551 -9.95718 -9.71309 -9.60562 -9.38304 -8.39291 -7.57432 -6.57853 -5.56954 -2.89536 3.50113 3.54725 3.56295 4.63090 4.83226 5.07647 5.16264 5.39962 5.60026 5.69123 5.72599 5.77405 5.87310 5.92820 6.04292 6.09590 6.18926 6.24402 6.31571 6.43981 6.51752 6.58661 6.72620 6.76312 6.81935 7.23542 7.66448 7.73164 7.79988 8.05732 8.23926 8.47593 9.41912 10.01914 10.71047 11.56643 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.026568 B = 0.013731 C = 0.009515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.642754 B = 2038.675626 C = 2942.104477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.017 4.017 3 Si 0.907 3.093 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.287 1.287 7 C -0.199 4.199 8 H 0.088 0.912 9 N -0.592 5.592 10 C 0.172 3.828 11 C -0.150 4.150 12 C -0.125 4.125 13 C 0.175 3.825 14 H 0.036 0.964 15 C 0.076 3.924 16 H 0.039 0.961 17 C -0.124 4.124 18 C -0.143 4.143 19 C 0.044 3.956 20 N -0.660 5.660 21 H 0.249 0.751 22 H 0.022 0.978 23 H 0.067 0.933 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.038 0.962 34 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.895 -9.158 3.978 10.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.214 1.214 5 H -0.222 1.222 6 H -0.213 1.213 7 C -0.328 4.328 8 H 0.106 0.894 9 N -0.315 5.315 10 C 0.047 3.953 11 C -0.188 4.188 12 C -0.164 4.164 13 C 0.067 3.933 14 H 0.054 0.946 15 C -0.036 4.036 16 H 0.057 0.943 17 C -0.163 4.163 18 C -0.181 4.181 19 C -0.086 4.086 20 N -0.292 5.292 21 H 0.059 0.941 22 H 0.040 0.960 23 H 0.085 0.915 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.200 -9.003 3.367 10.489 hybrid contribution -0.031 0.959 1.054 1.426 sum 4.169 -8.044 4.422 10.081 Atomic orbital electron populations 1.69937 1.04926 1.24745 1.58016 1.24921 0.95573 0.97586 1.03141 0.86267 0.78359 0.83676 0.77869 1.21447 1.22154 1.21342 1.19194 0.90974 0.81660 1.40989 0.89411 1.44532 1.06286 1.01691 1.79002 1.21397 0.85731 0.89755 0.98437 1.23010 0.97400 0.99938 0.98476 1.22560 0.97308 0.97305 0.99203 1.20954 0.93465 0.86848 0.92015 0.94638 1.22984 0.92699 0.88846 0.99100 0.94275 1.22799 0.97982 0.97736 0.97807 1.22821 0.99559 0.97361 0.98384 1.22625 0.97494 0.93812 0.94682 1.61770 1.13087 1.06763 1.47537 0.94106 0.96008 0.91500 0.92669 0.92473 0.92556 0.92318 0.91770 0.91114 0.91748 0.92256 0.91793 0.94303 0.83127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.51 10.61 55.49 0.59 -26.92 16 2 C -0.02 -0.49 5.47 -17.43 -0.10 -0.58 16 3 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.20 -5.47 8.26 -15.06 -0.12 -5.59 16 8 H 0.09 2.41 7.16 -52.49 -0.38 2.04 16 9 N -0.59 -15.00 3.13 -162.58 -0.51 -15.51 16 10 C 0.17 4.23 5.40 -2.53 -0.01 4.22 16 11 C -0.15 -2.90 7.09 -24.59 -0.17 -3.08 16 12 C -0.13 -2.25 6.15 -24.90 -0.15 -2.40 16 13 C 0.18 3.68 2.97 -66.95 -0.20 3.48 16 14 H 0.04 0.79 8.07 -51.93 -0.42 0.37 16 15 C 0.08 1.44 2.86 -66.19 -0.19 1.25 16 16 H 0.04 0.80 8.05 -51.93 -0.42 0.38 16 17 C -0.12 -1.89 6.19 -24.43 -0.15 -2.04 16 18 C -0.14 -1.97 6.95 -24.75 -0.17 -2.14 16 19 C 0.04 0.69 7.58 -2.84 -0.02 0.67 16 20 N -0.66 -13.02 5.22 -103.85 -0.54 -13.57 16 21 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 22 H 0.02 0.58 8.04 -51.93 -0.42 0.17 16 23 H 0.07 1.84 7.00 -51.93 -0.36 1.47 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.06 1.01 7.78 -51.93 -0.40 0.60 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 1.07 8.00 -51.93 -0.42 0.66 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.35 7.53 8.14 -39.30 -0.32 7.21 16 LS Contribution 264.41 15.07 3.98 3.98 Total: -1.00 -29.31 264.41 -8.44 -37.75 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -5.65 Total: 2.95 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -1.29 Total: -6.20 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: -0.46 Total: -56.00 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.31 -8.44 -37.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051360044.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.316 kcal (2) G-P(sol) polarization free energy of solvation -29.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds