Wall clock time and date at job start Mon Mar 30 2020 02:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00028 * 2 1 4 4 H 1.48501 * 109.47245 * 240.00505 * 3 2 1 5 5 H 1.48500 * 109.47358 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47436 * 120.00408 * 3 2 1 7 7 C 1.38810 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00184 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99891 * 0.02562 * 7 2 1 10 10 C 1.47422 * 125.65168 * 15.57854 * 9 7 2 11 11 C 1.54908 * 104.83721 * 155.83976 * 10 9 7 12 12 C 1.55153 * 101.57923 * 37.00981 * 11 10 9 13 13 C 1.47028 * 125.64917 * 195.54095 * 9 7 2 14 14 H 1.08996 * 109.88213 * 300.66423 * 13 9 7 15 15 C 1.52996 * 109.88010 * 61.67297 * 13 9 7 16 16 H 1.09000 * 110.33628 * 65.14224 * 15 13 9 17 17 C 1.54908 * 110.37313 * 187.39434 * 15 13 9 18 18 C 1.55431 * 101.52151 * 155.95069 * 17 15 13 19 19 C 1.54316 * 103.04595 * 324.36838 * 18 17 15 20 20 N 1.47441 * 107.23474 * 22.28572 * 19 18 17 21 21 H 0.96999 * 120.00095 * 359.97438 * 1 2 3 22 22 H 1.09001 * 110.36755 * 274.67894 * 10 9 7 23 23 H 1.09000 * 110.36730 * 36.99690 * 10 9 7 24 24 H 1.08994 * 111.00564 * 155.08269 * 11 10 9 25 25 H 1.09001 * 111.00020 * 278.89994 * 11 10 9 26 26 H 1.09004 * 110.71995 * 206.13875 * 12 11 10 27 27 H 1.09005 * 110.72459 * 82.86506 * 12 11 10 28 28 H 1.08997 * 110.99305 * 274.10346 * 17 15 13 29 29 H 1.08997 * 110.98662 * 37.92380 * 17 15 13 30 30 H 1.09001 * 110.69720 * 205.98053 * 18 17 15 31 31 H 1.08993 * 110.84432 * 82.82917 * 18 17 15 32 32 H 1.09000 * 109.89177 * 262.87435 * 19 18 17 33 33 H 1.09007 * 109.88758 * 141.69158 * 19 18 17 34 34 H 1.00893 * 111.00247 * 123.26027 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1038 1.6964 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1033 -2.5550 -0.3240 11 6 -0.2358 -4.0269 -0.7881 12 6 0.7624 -4.7433 0.1594 13 6 1.8938 -3.7059 0.3178 14 1 2.7086 -3.9346 -0.3691 15 6 2.4099 -3.7147 1.7581 16 1 1.5827 -3.5948 2.4577 17 6 3.1755 -5.0296 2.0486 18 6 4.1024 -4.5971 3.2189 19 6 4.4604 -3.1397 2.8594 20 7 3.4087 -2.6423 1.9536 21 1 -0.4850 0.8400 0.0004 22 1 -0.7149 -2.3798 0.5611 23 1 -0.3929 -1.8766 -1.1265 24 1 -1.2507 -4.3945 -0.6365 25 1 0.0658 -4.1368 -1.8297 26 1 1.1394 -5.6582 -0.2980 27 1 0.2963 -4.9557 1.1216 28 1 2.4916 -5.8189 2.3608 29 1 3.7593 -5.3410 1.1825 30 1 4.9982 -5.2174 3.2503 31 1 3.5720 -4.6403 4.1701 32 1 5.4274 -3.1083 2.3575 33 1 4.4895 -2.5313 3.7634 34 1 2.9769 -1.8091 2.3240 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051360044.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:04 Heat of formation + Delta-G solvation = 3.575616 kcal Electronic energy + Delta-G solvation = -14793.411055 eV Core-core repulsion = 12532.564658 eV Total energy + Delta-G solvation = -2260.846397 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.07449 -37.89396 -34.42999 -31.50974 -31.10742 -30.45305 -27.32561 -26.26818 -22.44575 -22.03729 -21.41453 -20.49755 -18.64766 -17.66440 -16.64374 -16.37041 -15.76421 -15.33505 -14.53345 -14.08180 -13.77306 -13.61005 -13.39531 -13.12008 -12.89175 -12.67476 -12.52795 -12.42666 -12.09269 -11.96225 -11.62083 -11.53384 -11.38399 -11.33216 -11.18901 -10.51812 -9.09757 -8.61592 -7.72483 -5.05587 1.48835 1.50859 1.57130 2.59355 3.35287 3.50323 3.80713 3.91014 4.10168 4.14068 4.20494 4.29296 4.39483 4.50029 4.69919 4.75310 4.90507 4.92497 4.99036 5.03231 5.10009 5.16111 5.22667 5.29882 5.42178 5.64175 5.68162 5.76239 5.87956 6.28434 6.45868 6.62412 7.27426 7.96480 8.63099 9.40272 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.026568 B = 0.013731 C = 0.009515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.642754 B = 2038.675626 C = 2942.104477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.076 4.076 3 Si 0.967 3.033 4 H -0.285 1.285 5 H -0.303 1.303 6 H -0.278 1.278 7 C -0.190 4.190 8 H 0.085 0.915 9 N -0.611 5.611 10 C 0.175 3.825 11 C -0.136 4.136 12 C -0.113 4.113 13 C 0.166 3.834 14 H 0.026 0.974 15 C 0.076 3.924 16 H 0.020 0.980 17 C -0.115 4.115 18 C -0.133 4.133 19 C 0.039 3.961 20 N -0.683 5.683 21 H 0.240 0.760 22 H -0.009 1.009 23 H 0.027 0.973 24 H 0.081 0.919 25 H 0.062 0.938 26 H 0.092 0.908 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.046 0.954 34 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.151 -11.345 4.595 13.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.267 4.267 3 Si 0.797 3.203 4 H -0.211 1.211 5 H -0.230 1.230 6 H -0.204 1.204 7 C -0.320 4.320 8 H 0.103 0.897 9 N -0.335 5.335 10 C 0.050 3.950 11 C -0.175 4.175 12 C -0.151 4.151 13 C 0.060 3.940 14 H 0.044 0.956 15 C -0.036 4.036 16 H 0.039 0.961 17 C -0.153 4.153 18 C -0.171 4.171 19 C -0.090 4.090 20 N -0.313 5.313 21 H 0.049 0.951 22 H 0.009 0.991 23 H 0.046 0.954 24 H 0.099 0.901 25 H 0.081 0.919 26 H 0.110 0.890 27 H 0.088 0.912 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.495 -11.238 3.991 13.131 hybrid contribution -0.371 1.607 0.848 1.855 sum 5.124 -9.631 4.838 11.934 Atomic orbital electron populations 1.70149 1.06202 1.24560 1.60097 1.25596 0.96302 1.00528 1.04288 0.85310 0.77036 0.79940 0.78017 1.21129 1.22952 1.20431 1.19356 0.90944 0.82781 1.38931 0.89742 1.44812 1.06602 1.02808 1.79247 1.21186 0.85206 0.92725 0.95913 1.22880 0.99612 0.95976 0.99024 1.22548 0.95510 0.97404 0.99648 1.21190 0.94246 0.85553 0.93045 0.95615 1.22859 0.92663 0.91077 0.96985 0.96149 1.22753 0.98122 0.95909 0.98554 1.22794 1.00414 0.95823 0.98112 1.22719 0.96269 0.95559 0.94421 1.61727 1.13821 1.06669 1.49074 0.95097 0.99073 0.95420 0.90055 0.91904 0.88964 0.91191 0.89463 0.90814 0.89138 0.91331 0.91467 0.93499 0.85066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.19 10.61 21.65 0.23 -58.96 16 2 C -0.08 -4.40 5.47 84.86 0.46 -3.93 16 3 Si 0.97 47.54 29.55 68.60 2.03 49.57 16 4 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 5 H -0.30 -15.14 7.11 99.48 0.71 -14.43 16 6 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 7 C -0.19 -10.66 8.26 84.03 0.69 -9.96 16 8 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 9 N -0.61 -31.42 3.13 -668.27 -2.09 -33.51 16 10 C 0.18 8.83 5.40 86.86 0.47 9.30 16 11 C -0.14 -5.06 7.09 31.98 0.23 -4.84 16 12 C -0.11 -3.71 6.15 31.78 0.20 -3.52 16 13 C 0.17 6.79 2.97 45.34 0.13 6.93 16 14 H 0.03 1.11 8.07 -2.39 -0.02 1.09 16 15 C 0.08 2.77 2.86 45.38 0.13 2.90 16 16 H 0.02 0.82 8.05 -2.39 -0.02 0.80 16 17 C -0.11 -3.07 6.19 32.08 0.20 -2.87 16 18 C -0.13 -3.18 6.95 31.88 0.22 -2.96 16 19 C 0.04 1.17 7.58 86.65 0.66 1.82 16 20 N -0.68 -26.53 5.22 -482.46 -2.52 -29.05 16 21 H 0.24 14.61 8.31 -92.71 -0.77 13.84 16 22 H -0.01 -0.49 8.04 -2.39 -0.02 -0.50 16 23 H 0.03 1.58 7.00 -2.39 -0.02 1.56 16 24 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 25 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 27 H 0.07 2.17 7.78 -2.38 -0.02 2.15 16 28 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.07 1.95 8.00 -2.39 -0.02 1.93 16 30 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.33 14.54 8.14 -89.70 -0.73 13.81 16 Total: -1.00 -65.32 264.41 1.37 -63.95 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 0.33 Total: 15.12 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: 3.39 Total: -7.12 kcal Atomic # 7 Polarization: -117.14 SS G_CDS: -4.38 Total: -121.52 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.57 kcal Total: -65.32 1.37 -63.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051360044.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.524 kcal (2) G-P(sol) polarization free energy of solvation -65.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds