Wall clock time and date at job start Mon Mar 30 2020 03:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 119.99610 * 2 1 4 4 H 1.08997 * 109.47315 * 5.00280 * 3 2 1 5 5 C 1.53002 * 109.46902 * 125.00575 * 3 2 1 6 6 N 1.46902 * 109.47210 * 245.00086 * 3 2 1 7 7 C 1.46901 * 111.00034 * 184.30381 * 6 3 2 8 8 C 1.53242 * 109.34092 * 172.74663 * 7 6 3 9 9 N 1.47083 * 108.52012 * 53.82986 * 8 7 6 10 10 C 1.36939 * 120.88080 * 128.83775 * 9 8 7 11 11 H 1.07994 * 120.00145 * 333.49660 * 10 9 8 12 12 C 1.38811 * 119.99710 * 153.50152 * 10 9 8 13 13 N 1.31617 * 119.99927 * 159.49092 * 12 10 9 14 14 Si 1.86800 * 120.00195 * 339.48189 * 12 10 9 15 15 H 1.48500 * 109.46993 * 91.94381 * 14 12 10 16 16 H 1.48499 * 109.47151 * 211.94641 * 14 12 10 17 17 H 1.48502 * 109.47134 * 331.94421 * 14 12 10 18 18 C 1.47087 * 118.23704 * 308.81715 * 9 8 7 19 19 C 1.46901 * 111.00067 * 60.00410 * 6 3 2 20 20 H 1.08008 * 120.00014 * 180.02562 * 1 2 3 21 21 H 1.07999 * 120.00422 * 359.97438 * 1 2 3 22 22 H 1.07999 * 120.00422 * 180.02562 * 2 1 3 23 23 H 1.08997 * 109.47376 * 59.99742 * 5 3 2 24 24 H 1.09000 * 109.47095 * 180.02562 * 5 3 2 25 25 H 1.09003 * 109.46980 * 299.99559 * 5 3 2 26 26 H 1.08999 * 109.49454 * 292.70517 * 7 6 3 27 27 H 1.09007 * 109.49379 * 52.78955 * 7 6 3 28 28 H 1.09003 * 109.63092 * 294.12362 * 8 7 6 29 29 H 1.08994 * 109.79287 * 173.63362 * 8 7 6 30 30 H 0.96998 * 120.00361 * 179.97438 * 13 12 10 31 31 H 1.09006 * 109.62629 * 291.47502 * 18 9 8 32 32 H 1.09001 * 109.62622 * 170.89750 * 18 9 8 33 33 H 1.09003 * 109.48749 * 307.21019 * 19 6 3 34 34 H 1.08997 * 109.49369 * 67.25975 * 19 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3584 2.1316 0.0896 5 6 3.0350 1.3331 1.1816 6 7 2.8151 1.4366 -1.2552 7 6 3.6430 2.6501 -1.2484 8 6 4.5431 2.6574 -2.4887 9 7 3.6978 2.4879 -3.6803 10 6 3.7985 3.3475 -4.7415 11 1 4.1447 4.3586 -4.5864 12 6 3.4554 2.9193 -6.0166 13 7 3.1597 3.7997 -6.9491 14 14 3.4138 1.0934 -6.4090 15 1 2.0439 0.5687 -6.1783 16 1 3.7916 0.8837 -7.8297 17 1 4.3729 0.3764 -5.5307 18 6 2.7417 1.3703 -3.7022 19 6 1.9127 1.4138 -2.4142 20 1 -0.5400 -0.9354 0.0004 21 1 -0.5401 0.9353 0.0004 22 1 1.8500 -0.9353 -0.0004 23 1 3.7399 0.5066 1.0920 24 1 3.5796 2.2773 1.1819 25 1 2.4772 1.2356 2.1130 26 1 2.9994 3.5297 -1.2610 27 1 4.2610 2.6638 -0.3505 28 1 5.2579 1.8368 -2.4272 29 1 5.0779 3.6050 -2.5510 30 1 2.9203 3.5005 -7.8402 31 1 3.2835 0.4261 -3.7572 32 1 2.0831 1.4687 -4.5651 33 1 1.2757 0.5308 -2.3617 34 1 1.2927 2.3103 -2.4102 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070994925.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:11 Heat of formation + Delta-G solvation = 57.781394 kcal Electronic energy + Delta-G solvation = -14542.972000 eV Core-core repulsion = 12284.476142 eV Total energy + Delta-G solvation = -2258.495858 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.79749 -35.75650 -32.98388 -31.34568 -30.67205 -29.36197 -26.23037 -23.71967 -22.48535 -21.78605 -19.53625 -19.34680 -16.93677 -15.79771 -15.03863 -14.65150 -14.25937 -14.20836 -13.89566 -13.68069 -12.78209 -12.59051 -12.23117 -12.04803 -11.71724 -11.55388 -11.40359 -10.97558 -10.77819 -10.42523 -10.24281 -9.99453 -9.76719 -9.48293 -9.29598 -8.61339 -7.92882 -6.91733 -5.91554 -3.26279 2.29500 3.35731 3.51904 3.57130 4.29816 4.57173 4.85848 5.02804 5.14458 5.34960 5.37571 5.49555 5.61530 5.74740 5.78831 5.89139 5.96807 6.03283 6.08676 6.16209 6.22480 6.33337 6.44523 6.62994 6.63771 6.69613 6.76967 6.92944 7.51725 7.55212 7.98247 8.35780 8.96927 9.75566 10.15648 11.24596 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.042821 B = 0.009689 C = 0.008624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.728815 B = 2889.319940 C = 3245.977198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 C 0.102 3.898 4 H 0.038 0.962 5 C -0.142 4.142 6 N -0.527 5.527 7 C 0.038 3.962 8 C 0.152 3.848 9 N -0.609 5.609 10 C -0.258 4.258 11 H 0.085 0.915 12 C 0.021 3.979 13 N -0.911 5.911 14 Si 0.884 3.116 15 H -0.289 1.289 16 H -0.304 1.304 17 H -0.270 1.270 18 C 0.131 3.869 19 C 0.044 3.956 20 H 0.097 0.903 21 H 0.093 0.907 22 H 0.112 0.888 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.031 0.969 27 H 0.072 0.928 28 H 0.029 0.971 29 H 0.064 0.936 30 H 0.262 0.738 31 H 0.032 0.968 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.603 -6.331 14.288 15.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.148 4.148 3 C -0.006 4.006 4 H 0.056 0.944 5 C -0.200 4.200 6 N -0.253 5.253 7 C -0.091 4.091 8 C 0.026 3.974 9 N -0.333 5.333 10 C -0.386 4.386 11 H 0.103 0.897 12 C -0.178 4.178 13 N -0.554 5.554 14 Si 0.715 3.285 15 H -0.216 1.216 16 H -0.232 1.232 17 H -0.195 1.195 18 C 0.005 3.995 19 C -0.085 4.085 20 H 0.115 0.885 21 H 0.111 0.889 22 H 0.130 0.870 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.049 0.951 27 H 0.090 0.910 28 H 0.047 0.953 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -2.298 -6.662 14.061 15.728 hybrid contribution -0.707 -0.347 -0.333 0.855 sum -3.005 -7.009 13.728 15.704 Atomic orbital electron populations 1.23831 0.95962 1.01634 1.02222 1.22883 0.95412 0.98387 0.98078 1.20798 0.94400 0.94365 0.91076 0.94405 1.21858 0.99241 1.02566 0.96298 1.62001 1.23464 1.38794 1.01010 1.22725 0.96542 0.90009 0.99857 1.21004 0.91743 0.99418 0.85230 1.44429 1.40006 1.32272 1.16637 1.18941 1.42019 0.92845 0.84829 0.89704 1.25259 0.99663 0.97306 0.95533 1.69837 1.48343 1.33266 1.03976 0.86938 0.77742 0.87509 0.76344 1.21643 1.23204 1.19461 1.21428 0.91870 0.91138 0.95090 1.22625 0.94584 0.99777 0.91561 0.88480 0.88895 0.87047 0.91706 0.92130 0.92621 0.95085 0.91008 0.95258 0.91717 0.92818 0.95020 0.90846 0.91454 0.94923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.30 14.09 29.02 0.41 -1.89 16 2 C -0.13 -1.65 7.56 -36.02 -0.27 -1.92 16 3 C 0.10 1.43 2.44 -68.86 -0.17 1.26 16 4 H 0.04 0.55 7.79 -51.93 -0.40 0.15 16 5 C -0.14 -1.66 8.82 37.16 0.33 -1.33 16 6 N -0.53 -9.12 4.49 -227.73 -1.02 -10.14 16 7 C 0.04 0.66 5.31 -3.70 -0.02 0.64 16 8 C 0.15 3.13 6.69 -3.60 -0.02 3.11 16 9 N -0.61 -15.12 2.82 -172.01 -0.48 -15.61 16 10 C -0.26 -7.42 10.08 -15.06 -0.15 -7.57 16 11 H 0.09 2.58 8.05 -52.49 -0.42 2.16 16 12 C 0.02 0.62 5.24 -17.43 -0.09 0.53 16 13 N -0.91 -28.44 13.97 55.49 0.78 -27.66 16 14 Si 0.88 23.00 24.30 -169.99 -4.13 18.87 16 15 H -0.29 -7.22 6.58 56.52 0.37 -6.85 16 16 H -0.30 -7.99 7.11 56.52 0.40 -7.59 16 17 H -0.27 -6.97 6.61 56.52 0.37 -6.59 16 18 C 0.13 3.01 4.35 -3.60 -0.02 2.99 16 19 C 0.04 0.84 5.44 -3.70 -0.02 0.82 16 20 H 0.10 0.97 8.06 -52.48 -0.42 0.55 16 21 H 0.09 1.07 7.84 -52.49 -0.41 0.66 16 22 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.06 0.69 6.19 -51.93 -0.32 0.37 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 1.05 5.83 -51.93 -0.30 0.75 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 1.29 7.95 -51.93 -0.41 0.88 16 30 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 31 H 0.03 0.74 6.94 -51.93 -0.36 0.38 16 32 H 0.07 1.83 4.60 -51.93 -0.24 1.59 16 33 H 0.07 1.18 6.68 -51.93 -0.35 0.84 16 34 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 262.93 15.07 3.96 3.96 Total: -1.00 -30.94 262.93 -6.30 -37.24 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -5.37 Total: -3.30 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -0.03 Total: -3.36 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: -0.73 Total: -53.41 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -4.13 Total: 18.87 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.94 -6.30 -37.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070994925.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.025 kcal (2) G-P(sol) polarization free energy of solvation -30.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds