Wall clock time and date at job start Mon Mar 30 2020 03:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 119.99610 * 2 1 4 4 H 1.08997 * 109.47315 * 5.00280 * 3 2 1 5 5 C 1.53002 * 109.46902 * 125.00575 * 3 2 1 6 6 N 1.46902 * 109.47210 * 245.00086 * 3 2 1 7 7 C 1.46901 * 111.00034 * 184.30381 * 6 3 2 8 8 C 1.53242 * 109.34092 * 172.74663 * 7 6 3 9 9 N 1.47083 * 108.52012 * 53.82986 * 8 7 6 10 10 C 1.36939 * 120.88080 * 128.83775 * 9 8 7 11 11 H 1.07994 * 120.00145 * 333.49660 * 10 9 8 12 12 C 1.38811 * 119.99710 * 153.50152 * 10 9 8 13 13 N 1.31617 * 119.99927 * 159.49092 * 12 10 9 14 14 Si 1.86800 * 120.00195 * 339.48189 * 12 10 9 15 15 H 1.48500 * 109.46993 * 91.94381 * 14 12 10 16 16 H 1.48499 * 109.47151 * 211.94641 * 14 12 10 17 17 H 1.48502 * 109.47134 * 331.94421 * 14 12 10 18 18 C 1.47087 * 118.23704 * 308.81715 * 9 8 7 19 19 C 1.46901 * 111.00067 * 60.00410 * 6 3 2 20 20 H 1.08008 * 120.00014 * 180.02562 * 1 2 3 21 21 H 1.07999 * 120.00422 * 359.97438 * 1 2 3 22 22 H 1.07999 * 120.00422 * 180.02562 * 2 1 3 23 23 H 1.08997 * 109.47376 * 59.99742 * 5 3 2 24 24 H 1.09000 * 109.47095 * 180.02562 * 5 3 2 25 25 H 1.09003 * 109.46980 * 299.99559 * 5 3 2 26 26 H 1.08999 * 109.49454 * 292.70517 * 7 6 3 27 27 H 1.09007 * 109.49379 * 52.78955 * 7 6 3 28 28 H 1.09003 * 109.63092 * 294.12362 * 8 7 6 29 29 H 1.08994 * 109.79287 * 173.63362 * 8 7 6 30 30 H 0.96998 * 120.00361 * 179.97438 * 13 12 10 31 31 H 1.09006 * 109.62629 * 291.47502 * 18 9 8 32 32 H 1.09001 * 109.62622 * 170.89750 * 18 9 8 33 33 H 1.09003 * 109.48749 * 307.21019 * 19 6 3 34 34 H 1.08997 * 109.49369 * 67.25975 * 19 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3584 2.1316 0.0896 5 6 3.0350 1.3331 1.1816 6 7 2.8151 1.4366 -1.2552 7 6 3.6430 2.6501 -1.2484 8 6 4.5431 2.6574 -2.4887 9 7 3.6978 2.4879 -3.6803 10 6 3.7985 3.3475 -4.7415 11 1 4.1447 4.3586 -4.5864 12 6 3.4554 2.9193 -6.0166 13 7 3.1597 3.7997 -6.9491 14 14 3.4138 1.0934 -6.4090 15 1 2.0439 0.5687 -6.1783 16 1 3.7916 0.8837 -7.8297 17 1 4.3729 0.3764 -5.5307 18 6 2.7417 1.3703 -3.7022 19 6 1.9127 1.4138 -2.4142 20 1 -0.5400 -0.9354 0.0004 21 1 -0.5401 0.9353 0.0004 22 1 1.8500 -0.9353 -0.0004 23 1 3.7399 0.5066 1.0920 24 1 3.5796 2.2773 1.1819 25 1 2.4772 1.2356 2.1130 26 1 2.9994 3.5297 -1.2610 27 1 4.2610 2.6638 -0.3505 28 1 5.2579 1.8368 -2.4272 29 1 5.0779 3.6050 -2.5510 30 1 2.9203 3.5005 -7.8402 31 1 3.2835 0.4261 -3.7572 32 1 2.0831 1.4687 -4.5651 33 1 1.2757 0.5308 -2.3617 34 1 1.2927 2.3103 -2.4102 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070994925.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:11 Heat of formation + Delta-G solvation = 36.182422 kcal Electronic energy + Delta-G solvation = -14543.908602 eV Core-core repulsion = 12284.476142 eV Total energy + Delta-G solvation = -2259.432460 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.22712 -37.31433 -34.58626 -33.14291 -32.23301 -30.63348 -27.94942 -25.34039 -24.18991 -23.13835 -21.00043 -20.54731 -18.88527 -17.51295 -16.63077 -16.05972 -15.89288 -15.53630 -15.48128 -15.06227 -14.52926 -14.28847 -13.94414 -13.47259 -13.05512 -12.84501 -12.69903 -12.53058 -12.28707 -12.11836 -11.92141 -11.62987 -11.50771 -11.38465 -10.75865 -10.29895 -9.37292 -8.91228 -8.18943 -5.50420 1.28440 1.35336 1.40084 1.50304 2.40002 2.94391 3.06346 3.35070 3.86242 4.09469 4.14413 4.20229 4.33920 4.42889 4.52239 4.56219 4.58178 4.68410 4.79860 4.83735 4.92176 4.97791 5.02838 5.16390 5.28001 5.36282 5.70675 5.77650 5.81218 6.08210 6.15034 6.26113 6.87319 7.58649 8.01887 9.00969 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.042821 B = 0.009689 C = 0.008624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.728815 B = 2889.319940 C = 3245.977198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.146 4.146 3 C 0.100 3.900 4 H 0.032 0.968 5 C -0.137 4.137 6 N -0.531 5.531 7 C 0.048 3.952 8 C 0.146 3.854 9 N -0.624 5.624 10 C -0.251 4.251 11 H 0.053 0.947 12 C -0.036 4.036 13 N -0.957 5.957 14 Si 0.949 3.051 15 H -0.273 1.273 16 H -0.308 1.308 17 H -0.265 1.265 18 C 0.126 3.874 19 C 0.056 3.944 20 H 0.115 0.885 21 H 0.091 0.909 22 H 0.118 0.882 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.074 0.926 26 H 0.017 0.983 27 H 0.107 0.893 28 H 0.037 0.963 29 H 0.062 0.938 30 H 0.262 0.738 31 H 0.035 0.965 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.988 -8.281 16.368 18.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.164 4.164 3 C -0.007 4.007 4 H 0.050 0.950 5 C -0.194 4.194 6 N -0.256 5.256 7 C -0.081 4.081 8 C 0.021 3.979 9 N -0.350 5.350 10 C -0.380 4.380 11 H 0.071 0.929 12 C -0.230 4.230 13 N -0.603 5.603 14 Si 0.778 3.222 15 H -0.199 1.199 16 H -0.237 1.237 17 H -0.189 1.189 18 C 0.001 3.999 19 C -0.073 4.073 20 H 0.134 0.866 21 H 0.110 0.890 22 H 0.136 0.864 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.093 0.907 26 H 0.036 0.964 27 H 0.124 0.876 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -2.684 -8.634 16.197 18.549 hybrid contribution -0.596 0.322 -0.883 1.113 sum -3.281 -8.311 15.314 17.730 Atomic orbital electron populations 1.24021 0.95708 1.02515 1.00207 1.22869 0.95781 0.97889 0.99868 1.20916 0.94753 0.94998 0.90046 0.94991 1.21832 0.98929 1.02696 0.95978 1.61997 1.23564 1.38286 1.01800 1.22594 0.96295 0.89763 0.99448 1.21202 0.92152 0.99582 0.84958 1.44578 1.41466 1.32171 1.16737 1.18902 1.40510 0.92368 0.86265 0.92880 1.25885 1.00247 1.01430 0.95469 1.69961 1.50592 1.35321 1.04475 0.85888 0.78499 0.82274 0.75583 1.19938 1.23685 1.18931 1.21439 0.91610 0.90349 0.96476 1.22379 0.94121 1.00036 0.90779 0.86636 0.89023 0.86429 0.91547 0.91939 0.90718 0.96439 0.87550 0.94471 0.91947 0.92883 0.94744 0.92972 0.89358 0.96463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.70 14.09 67.78 0.96 -2.75 16 2 C -0.15 -3.24 7.56 25.65 0.19 -3.05 16 3 C 0.10 2.52 2.44 44.17 0.11 2.63 16 4 H 0.03 0.85 7.79 -2.39 -0.02 0.84 16 5 C -0.14 -2.71 8.82 71.98 0.64 -2.08 16 6 N -0.53 -17.02 4.49 -874.39 -3.93 -20.94 16 7 C 0.05 1.57 5.31 86.38 0.46 2.03 16 8 C 0.15 5.85 6.69 86.35 0.58 6.43 16 9 N -0.62 -30.83 2.82 -698.11 -1.97 -32.80 16 10 C -0.25 -14.73 10.08 84.03 0.85 -13.89 16 11 H 0.05 3.38 8.05 -2.91 -0.02 3.35 16 12 C -0.04 -2.14 5.24 84.86 0.44 -1.70 16 13 N -0.96 -61.37 13.97 21.65 0.30 -61.07 16 14 Si 0.95 47.96 24.30 68.60 1.67 49.63 16 15 H -0.27 -12.96 6.58 99.48 0.65 -12.31 16 16 H -0.31 -15.67 7.11 99.48 0.71 -14.96 16 17 H -0.26 -13.01 6.61 99.48 0.66 -12.35 16 18 C 0.13 5.67 4.35 86.35 0.38 6.05 16 19 C 0.06 2.07 5.44 86.38 0.47 2.54 16 20 H 0.12 1.87 8.06 -2.91 -0.02 1.84 16 21 H 0.09 1.84 7.84 -2.91 -0.02 1.82 16 22 H 0.12 2.49 8.06 -2.91 -0.02 2.47 16 23 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.06 1.20 6.19 -2.39 -0.01 1.18 16 25 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.11 2.77 5.83 -2.38 -0.01 2.76 16 28 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.06 2.48 7.95 -2.39 -0.02 2.46 16 30 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 31 H 0.03 1.54 6.94 -2.38 -0.02 1.52 16 32 H 0.05 2.55 4.60 -2.39 -0.01 2.54 16 33 H 0.09 2.86 6.68 -2.39 -0.02 2.85 16 34 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -66.71 262.93 2.09 -64.62 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: 0.95 Total: 4.34 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: 5.07 Total: -3.78 kcal Atomic # 7 Polarization: -109.22 SS G_CDS: -5.59 Total: -114.81 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 1.67 Total: 49.63 kcal Total: -66.71 2.09 -64.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070994925.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.807 kcal (2) G-P(sol) polarization free energy of solvation -66.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds