Wall clock time and date at job start Mon Mar 30 2020 02:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99674 * 2 1 4 4 H 1.48505 * 109.46863 * 240.00004 * 3 2 1 5 5 H 1.48499 * 109.47195 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47017 * 120.00303 * 3 2 1 7 7 C 1.37874 * 120.00102 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99860 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00185 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47193 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.20769 * 305.00158 * 10 9 7 12 12 C 1.52842 * 109.21052 * 185.63485 * 10 9 7 13 13 C 1.53749 * 110.48401 * 187.03303 * 12 10 9 14 14 N 1.45703 * 107.47648 * 54.78000 * 13 12 10 15 15 C 1.46367 * 117.03058 * 177.12569 * 14 13 12 16 16 C 1.54798 * 105.97579 * 151.25375 * 15 14 13 17 17 C 1.55326 * 104.98571 * 356.30921 * 16 15 14 18 18 C 1.48701 * 109.29769 * 296.80595 * 14 13 12 19 19 H 1.09004 * 110.93580 * 307.69475 * 18 14 13 20 20 N 1.46012 * 107.41127 * 69.44008 * 18 14 13 21 21 H 0.96998 * 120.00534 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46693 * 60.00134 * 9 7 2 23 23 H 1.09002 * 109.47148 * 299.99856 * 9 7 2 24 24 H 1.09004 * 109.30125 * 307.33571 * 12 10 9 25 25 H 1.08990 * 109.30289 * 66.72024 * 12 10 9 26 26 H 1.09000 * 109.85360 * 174.27553 * 13 12 10 27 27 H 1.09001 * 109.85440 * 295.21772 * 13 12 10 28 28 H 1.08998 * 110.15262 * 270.38104 * 15 14 13 29 29 H 1.09001 * 110.15054 * 32.12570 * 15 14 13 30 30 H 1.09006 * 110.33508 * 237.42987 * 16 15 14 31 31 H 1.08999 * 110.33983 * 115.19314 * 16 15 14 32 32 H 1.09005 * 110.90954 * 219.62124 * 17 16 15 33 33 H 1.08993 * 110.90952 * 96.01701 * 17 16 15 34 34 H 1.00908 * 110.93642 * 172.45481 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 1 2.9265 -3.5513 -0.8423 12 6 1.4804 -4.9777 -0.1391 13 6 2.4311 -6.1738 0.0325 14 7 3.1119 -6.0118 1.3105 15 6 4.0276 -7.0791 1.7163 16 6 5.1008 -6.4047 2.6050 17 6 4.7561 -4.8905 2.5717 18 6 3.9367 -4.7751 1.2746 19 1 4.5904 -4.7681 0.4023 20 7 3.0199 -3.6388 1.2571 21 1 -0.4851 0.8400 0.0004 22 1 0.6241 -2.5574 -0.8880 23 1 0.6248 -2.5563 0.8920 24 1 0.7015 -5.0247 0.6220 25 1 1.0192 -5.0227 -1.1256 26 1 1.8610 -7.1029 0.0318 27 1 3.1602 -6.1864 -0.7776 28 1 3.4911 -7.8378 2.2860 29 1 4.4942 -7.5273 0.8391 30 1 6.0956 -6.5760 2.1936 31 1 5.0413 -6.7844 3.6250 32 1 5.6618 -4.2865 2.5147 33 1 4.1563 -4.6089 3.4371 34 1 3.5217 -2.7690 1.3564 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075569619.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:29 Heat of formation + Delta-G solvation = -18.055695 kcal Electronic energy + Delta-G solvation = -14380.642171 eV Core-core repulsion = 12118.857770 eV Total energy + Delta-G solvation = -2261.784401 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.83619 -37.12911 -34.77470 -33.89150 -31.51316 -29.58998 -27.90899 -25.79456 -23.63268 -22.08519 -21.49696 -20.62703 -18.47417 -17.21856 -16.76839 -16.51342 -16.39267 -15.47175 -14.73009 -14.70371 -14.53914 -13.81832 -13.60108 -13.46443 -13.09007 -12.81509 -12.54526 -12.32200 -12.27594 -12.13053 -11.83623 -11.71765 -11.53128 -11.24249 -10.87652 -10.55014 -9.58086 -8.98248 -8.16787 -6.27240 1.40557 1.43695 1.51111 2.42187 2.89897 3.16395 3.44268 3.78510 3.82537 3.98540 4.14921 4.19269 4.23304 4.42799 4.50504 4.59849 4.69728 4.82835 4.88633 4.97427 5.01158 5.09471 5.17230 5.31521 5.35391 5.45820 5.58691 5.77890 5.83896 6.21443 6.34174 6.37300 6.77754 6.86658 7.40751 8.95114 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.047135 B = 0.007980 C = 0.007081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.898737 B = 3507.735310 C = 3953.022003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.964 3.036 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.531 4.531 8 H 0.058 0.942 9 C 0.039 3.961 10 C 0.101 3.899 11 H 0.012 0.988 12 C -0.106 4.106 13 C 0.066 3.934 14 N -0.546 5.546 15 C 0.049 3.951 16 C -0.116 4.116 17 C -0.111 4.111 18 C 0.228 3.772 19 H 0.009 0.991 20 N -0.663 5.663 21 H 0.263 0.737 22 H -0.007 1.007 23 H -0.006 1.006 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.091 0.909 27 H 0.030 0.970 28 H 0.087 0.913 29 H 0.044 0.956 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.448 -12.557 2.611 16.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.788 3.212 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.569 4.569 8 H 0.077 0.923 9 C 0.001 3.999 10 C -0.009 4.009 11 H 0.030 0.970 12 C -0.144 4.144 13 C -0.062 4.062 14 N -0.273 5.273 15 C -0.079 4.079 16 C -0.154 4.154 17 C -0.149 4.149 18 C 0.029 3.971 19 H 0.026 0.974 20 N -0.296 5.296 21 H 0.071 0.929 22 H 0.011 0.989 23 H 0.012 0.988 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.109 0.891 27 H 0.048 0.952 28 H 0.105 0.895 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 9.396 -12.757 3.335 16.191 hybrid contribution 1.038 1.340 -1.480 2.250 sum 10.434 -11.417 1.855 15.578 Atomic orbital electron populations 1.70096 1.07851 1.27703 1.51737 1.25933 0.95682 1.03207 0.94854 0.85525 0.78252 0.78301 0.79083 1.19374 1.21083 1.19051 1.21475 0.93100 0.92049 1.50279 0.92341 1.18961 0.93882 0.92344 0.94665 1.21450 0.94862 0.95498 0.89048 0.96979 1.21685 0.98277 0.93145 1.01309 1.21990 0.96400 0.98702 0.89076 1.62686 1.29956 1.03464 1.31201 1.22585 0.93073 0.93591 0.98623 1.22587 0.98293 0.93435 1.01127 1.22318 0.98785 0.97598 0.96244 1.22954 0.89665 0.87717 0.96722 0.97354 1.60662 1.27093 1.05224 1.36641 0.92876 0.98873 0.98799 0.92509 0.90989 0.89066 0.95214 0.89521 0.93750 0.89842 0.89347 0.90057 0.90915 0.83396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.77 13.29 21.45 0.28 -57.48 16 2 C 0.00 0.05 5.46 84.65 0.46 0.52 16 3 Si 0.96 44.56 29.54 68.60 2.03 46.59 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 5 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.53 -30.24 8.46 25.60 0.22 -30.02 16 8 H 0.06 3.15 7.10 -2.91 -0.02 3.13 16 9 C 0.04 2.12 4.63 29.85 0.14 2.26 16 10 C 0.10 4.44 2.49 44.74 0.11 4.55 16 11 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 12 C -0.11 -3.97 5.48 30.79 0.17 -3.80 16 13 C 0.07 2.02 5.90 86.78 0.51 2.53 16 14 N -0.55 -16.86 4.82 -876.52 -4.23 -21.09 16 15 C 0.05 1.11 6.86 87.02 0.60 1.71 16 16 C -0.12 -2.27 6.99 32.01 0.22 -2.05 16 17 C -0.11 -2.86 6.87 31.68 0.22 -2.65 16 18 C 0.23 7.46 2.91 129.19 0.38 7.84 16 19 H 0.01 0.31 8.06 -2.38 -0.02 0.29 16 20 N -0.66 -27.10 6.48 -475.79 -3.09 -30.19 16 21 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 22 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 23 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 24 H 0.06 2.31 8.13 -2.38 -0.02 2.29 16 25 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 26 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.03 0.87 8.07 -2.39 -0.02 0.85 16 28 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.04 0.91 8.03 -2.39 -0.02 0.89 16 30 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.35 14.54 7.54 -89.69 -0.68 13.86 16 Total: -1.00 -65.48 268.17 -1.60 -67.08 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.38 Total: 14.21 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: 3.02 Total: -19.11 kcal Atomic # 7 Polarization: -101.74 SS G_CDS: -7.03 Total: -108.76 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -65.48 -1.60 -67.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075569619.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.022 kcal (2) G-P(sol) polarization free energy of solvation -65.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds