Wall clock time and date at job start Mon Mar 30 2020 02:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 119.99935 * 2 1 4 4 H 1.48501 * 109.47360 * 270.00185 * 3 2 1 5 5 H 1.48496 * 109.47266 * 30.00042 * 3 2 1 6 6 H 1.48498 * 109.47091 * 150.00095 * 3 2 1 7 7 C 1.37876 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00161 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00183 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47235 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.20840 * 55.63363 * 10 9 7 12 12 C 1.52836 * 109.21324 * 175.00125 * 10 9 7 13 13 C 1.53724 * 110.54114 * 172.87634 * 12 10 9 14 14 N 1.45853 * 107.42782 * 304.96011 * 13 12 10 15 15 C 1.47129 * 116.32212 * 180.02562 * 14 13 12 16 16 C 1.55190 * 103.54116 * 198.25021 * 15 14 13 17 17 C 1.54994 * 104.92065 * 24.03476 * 16 15 14 18 18 C 1.48758 * 108.93641 * 63.39103 * 14 13 12 19 19 H 1.09001 * 110.83962 * 50.67134 * 18 14 13 20 20 N 1.45970 * 107.63413 * 290.34985 * 18 14 13 21 21 H 0.96993 * 120.00387 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.47154 * 59.99981 * 9 7 2 23 23 H 1.09000 * 109.47402 * 300.00366 * 9 7 2 24 24 H 1.09004 * 109.26372 * 293.15287 * 12 10 9 25 25 H 1.09002 * 109.26067 * 52.59961 * 12 10 9 26 26 H 1.09000 * 109.86874 * 64.44448 * 13 12 10 27 27 H 1.09007 * 109.86914 * 185.48735 * 13 12 10 28 28 H 1.09003 * 110.60478 * 79.73924 * 15 14 13 29 29 H 1.09000 * 110.74246 * 316.83252 * 15 14 13 30 30 H 1.09001 * 110.35143 * 265.17036 * 16 15 14 31 31 H 1.08997 * 110.34882 * 142.89308 * 16 15 14 32 32 H 1.08997 * 110.48452 * 243.78427 * 17 16 15 33 33 H 1.08999 * 110.48548 * 121.14457 * 17 16 15 34 34 H 1.00903 * 110.99601 * 302.35944 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 0.0001 11 1 3.5930 -3.1685 -0.8493 12 6 5.5447 -2.6315 -0.1263 13 6 6.1051 -4.0522 0.0482 14 7 5.6173 -4.5604 1.3254 15 6 6.0419 -5.9208 1.6913 16 6 5.0264 -6.3354 2.7892 17 6 3.7750 -5.4595 2.5266 18 6 4.1339 -4.6581 1.2712 19 1 3.8130 -5.1978 0.3802 20 7 3.6018 -3.2990 1.2501 21 1 -0.4850 0.8400 -0.0004 22 1 3.8752 -0.6796 0.8895 23 1 3.8746 -0.6807 -0.8905 24 1 5.8227 -2.2536 -1.1102 25 1 5.9669 -1.9816 0.6403 26 1 5.7548 -4.6908 -0.7627 27 1 7.1947 -4.0227 0.0534 28 1 7.0561 -5.9117 2.0906 29 1 5.9744 -6.5901 0.8337 30 1 5.4330 -6.1287 3.7792 31 1 4.7762 -7.3920 2.6944 32 1 3.5947 -4.7900 3.3676 33 1 2.9024 -6.0862 2.3429 34 1 3.9100 -2.7774 2.0570 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075569624.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:38 Heat of formation + Delta-G solvation = 5.896934 kcal Electronic energy + Delta-G solvation = -14420.042958 eV Core-core repulsion = 12159.297221 eV Total energy + Delta-G solvation = -2260.745737 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.77245 -35.71663 -32.82541 -32.24742 -30.21484 -28.30959 -26.66283 -23.81040 -21.93243 -20.88454 -20.14800 -19.73081 -16.55749 -15.84260 -15.67296 -14.79747 -14.32686 -14.23282 -13.59867 -13.24451 -12.81402 -12.48844 -12.22311 -12.03465 -11.57279 -11.37355 -11.23450 -11.04740 -10.79324 -10.57361 -10.42673 -10.19663 -9.69101 -9.53590 -9.07652 -8.42712 -8.35554 -7.76557 -5.90381 -3.85283 3.36547 3.44473 3.47415 4.15344 4.55001 4.56440 4.85528 5.01332 5.11649 5.28041 5.35135 5.41759 5.44663 5.60496 5.62718 5.80077 5.84969 5.93631 6.02417 6.06369 6.16391 6.23761 6.33555 6.56173 6.71967 6.96180 7.14910 7.23075 7.41818 7.75419 7.92275 8.15598 8.72168 9.22656 9.72312 11.23525 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.049905 B = 0.008181 C = 0.007414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.925759 B = 3421.686044 C = 3775.922744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.062 3.938 3 Si 0.875 3.125 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.268 1.268 7 C -0.495 4.495 8 H 0.080 0.920 9 C -0.007 4.007 10 C 0.098 3.902 11 H 0.069 0.931 12 C -0.149 4.149 13 C 0.055 3.945 14 N -0.556 5.556 15 C 0.043 3.957 16 C -0.121 4.121 17 C -0.112 4.112 18 C 0.224 3.776 19 H 0.059 0.941 20 N -0.632 5.632 21 H 0.260 0.740 22 H 0.016 0.984 23 H 0.015 0.985 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.030 0.970 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.036 0.964 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.233 -10.342 2.951 16.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.138 4.138 3 Si 0.703 3.297 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.193 1.193 7 C -0.533 4.533 8 H 0.098 0.902 9 C -0.045 4.045 10 C -0.012 4.012 11 H 0.088 0.912 12 C -0.189 4.189 13 C -0.073 4.073 14 N -0.284 5.284 15 C -0.086 4.086 16 C -0.159 4.159 17 C -0.150 4.150 18 C 0.026 3.974 19 H 0.077 0.923 20 N -0.262 5.262 21 H 0.070 0.930 22 H 0.034 0.966 23 H 0.033 0.967 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.049 0.951 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.055 0.945 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 11.616 -10.019 3.081 15.646 hybrid contribution 1.202 0.571 -0.563 1.445 sum 12.818 -9.448 2.518 16.121 Atomic orbital electron populations 1.69910 1.06174 1.26432 1.52207 1.25024 0.94688 0.98784 0.95313 0.86872 0.80354 0.84303 0.78219 1.20614 1.21585 1.19269 1.21077 0.88950 0.94543 1.48772 0.90207 1.19650 0.98034 0.90566 0.96236 1.21615 0.89667 0.97928 0.91974 0.91242 1.22457 0.99223 0.95228 1.01969 1.22079 0.99334 0.96446 0.89480 1.64626 1.09425 1.23297 1.31090 1.22722 0.99156 0.89356 0.97339 1.22535 0.95414 0.99054 0.98934 1.22067 0.97009 0.97984 0.97989 1.23021 0.84218 0.92829 0.97361 0.92301 1.61349 1.58921 1.00819 1.05102 0.93035 0.96618 0.96710 0.91566 0.91612 0.95143 0.91573 0.90846 0.94526 0.91153 0.91607 0.90464 0.90974 0.83832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.52 13.96 55.43 0.77 -27.74 16 2 C 0.06 1.82 5.47 -17.82 -0.10 1.73 16 3 Si 0.87 22.05 27.47 -169.99 -4.67 17.38 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 7 C -0.50 -14.21 9.35 -34.44 -0.32 -14.53 16 8 H 0.08 2.51 7.99 -52.49 -0.42 2.09 16 9 C -0.01 -0.18 3.62 -27.88 -0.10 -0.28 16 10 C 0.10 1.97 2.43 -67.43 -0.16 1.80 16 11 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 12 C -0.15 -2.47 5.48 -26.44 -0.14 -2.61 16 13 C 0.06 0.80 5.93 -4.01 -0.02 0.78 16 14 N -0.56 -8.20 5.01 -227.78 -1.14 -9.34 16 15 C 0.04 0.52 6.70 -2.54 -0.02 0.50 16 16 C -0.12 -1.34 7.05 -24.52 -0.17 -1.51 16 17 C -0.11 -1.51 6.83 -25.58 -0.17 -1.69 16 18 C 0.22 3.60 2.80 -125.60 -0.35 3.25 16 19 H 0.06 1.00 7.99 -51.93 -0.41 0.59 16 20 N -0.63 -12.29 6.23 -102.10 -0.64 -12.92 16 21 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 22 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 23 H 0.01 0.35 7.57 -51.93 -0.39 -0.04 16 24 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 25 H 0.07 1.12 8.13 -51.93 -0.42 0.69 16 26 H 0.03 0.44 8.03 -51.93 -0.42 0.02 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.04 0.42 8.13 -51.93 -0.42 0.00 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.34 6.69 8.79 -39.29 -0.35 6.34 16 LS Contribution 266.34 15.07 4.01 4.01 Total: -1.00 -30.55 266.34 -8.99 -39.54 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.76 Total: 1.63 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -1.57 Total: -12.55 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: -1.00 Total: -50.01 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.55 -8.99 -39.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075569624.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.435 kcal (2) G-P(sol) polarization free energy of solvation -30.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds