Wall clock time and date at job start Mon Mar 30 2020 02:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 119.99935 * 2 1 4 4 H 1.48501 * 109.47360 * 270.00185 * 3 2 1 5 5 H 1.48496 * 109.47266 * 30.00042 * 3 2 1 6 6 H 1.48498 * 109.47091 * 150.00095 * 3 2 1 7 7 C 1.37876 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00161 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00183 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47235 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.20840 * 55.63363 * 10 9 7 12 12 C 1.52836 * 109.21324 * 175.00125 * 10 9 7 13 13 C 1.53724 * 110.54114 * 172.87634 * 12 10 9 14 14 N 1.45853 * 107.42782 * 304.96011 * 13 12 10 15 15 C 1.47129 * 116.32212 * 180.02562 * 14 13 12 16 16 C 1.55190 * 103.54116 * 198.25021 * 15 14 13 17 17 C 1.54994 * 104.92065 * 24.03476 * 16 15 14 18 18 C 1.48758 * 108.93641 * 63.39103 * 14 13 12 19 19 H 1.09001 * 110.83962 * 50.67134 * 18 14 13 20 20 N 1.45970 * 107.63413 * 290.34985 * 18 14 13 21 21 H 0.96993 * 120.00387 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.47154 * 59.99981 * 9 7 2 23 23 H 1.09000 * 109.47402 * 300.00366 * 9 7 2 24 24 H 1.09004 * 109.26372 * 293.15287 * 12 10 9 25 25 H 1.09002 * 109.26067 * 52.59961 * 12 10 9 26 26 H 1.09000 * 109.86874 * 64.44448 * 13 12 10 27 27 H 1.09007 * 109.86914 * 185.48735 * 13 12 10 28 28 H 1.09003 * 110.60478 * 79.73924 * 15 14 13 29 29 H 1.09000 * 110.74246 * 316.83252 * 15 14 13 30 30 H 1.09001 * 110.35143 * 265.17036 * 16 15 14 31 31 H 1.08997 * 110.34882 * 142.89308 * 16 15 14 32 32 H 1.08997 * 110.48452 * 243.78427 * 17 16 15 33 33 H 1.08999 * 110.48548 * 121.14457 * 17 16 15 34 34 H 1.00903 * 110.99601 * 302.35944 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 0.0001 11 1 3.5930 -3.1685 -0.8493 12 6 5.5447 -2.6315 -0.1263 13 6 6.1051 -4.0522 0.0482 14 7 5.6173 -4.5604 1.3254 15 6 6.0419 -5.9208 1.6913 16 6 5.0264 -6.3354 2.7892 17 6 3.7750 -5.4595 2.5266 18 6 4.1339 -4.6581 1.2712 19 1 3.8130 -5.1978 0.3802 20 7 3.6018 -3.2990 1.2501 21 1 -0.4850 0.8400 -0.0004 22 1 3.8752 -0.6796 0.8895 23 1 3.8746 -0.6807 -0.8905 24 1 5.8227 -2.2536 -1.1102 25 1 5.9669 -1.9816 0.6403 26 1 5.7548 -4.6908 -0.7627 27 1 7.1947 -4.0227 0.0534 28 1 7.0561 -5.9117 2.0906 29 1 5.9744 -6.5901 0.8337 30 1 5.4330 -6.1287 3.7792 31 1 4.7762 -7.3920 2.6944 32 1 3.5947 -4.7900 3.3676 33 1 2.9024 -6.0862 2.3429 34 1 3.9100 -2.7774 2.0570 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075569624.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:38 Heat of formation + Delta-G solvation = -16.922031 kcal Electronic energy + Delta-G solvation = -14421.032462 eV Core-core repulsion = 12159.297221 eV Total energy + Delta-G solvation = -2261.735241 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.00419 -37.14352 -34.70469 -33.71890 -31.83566 -29.72029 -28.03826 -25.43997 -23.42000 -22.03662 -21.47836 -21.23671 -18.75117 -17.04681 -16.86536 -16.33577 -16.01130 -15.56402 -15.09873 -14.62817 -14.41508 -13.91400 -13.83744 -13.47791 -13.06885 -12.88028 -12.49655 -12.30397 -12.27318 -11.97284 -11.79953 -11.59822 -11.43473 -11.36073 -11.21013 -10.69512 -9.51283 -9.19257 -8.18797 -6.19272 1.37491 1.39894 1.51071 2.41724 3.04097 3.14103 3.34416 3.77805 3.84953 3.96770 4.07729 4.23207 4.27332 4.40853 4.51031 4.60295 4.68273 4.79238 4.85341 4.96481 5.01493 5.04696 5.11776 5.16559 5.23403 5.28804 5.51826 5.71897 5.82659 6.15858 6.30091 6.49390 6.67063 6.89488 7.42048 8.98653 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.049905 B = 0.008181 C = 0.007414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.925759 B = 3421.686044 C = 3775.922744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.003 4.003 3 Si 0.949 3.051 4 H -0.269 1.269 5 H -0.288 1.288 6 H -0.248 1.248 7 C -0.498 4.498 8 H 0.034 0.966 9 C -0.003 4.003 10 C 0.103 3.897 11 H 0.049 0.951 12 C -0.141 4.141 13 C 0.059 3.941 14 N -0.562 5.562 15 C 0.042 3.958 16 C -0.111 4.111 17 C -0.112 4.112 18 C 0.222 3.778 19 H 0.045 0.955 20 N -0.656 5.656 21 H 0.262 0.738 22 H 0.018 0.982 23 H 0.023 0.977 24 H 0.078 0.922 25 H 0.065 0.935 26 H 0.030 0.970 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.043 0.957 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.943 -10.528 3.362 18.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.198 4.198 3 Si 0.773 3.227 4 H -0.194 1.194 5 H -0.214 1.214 6 H -0.172 1.172 7 C -0.537 4.537 8 H 0.052 0.948 9 C -0.040 4.040 10 C -0.007 4.007 11 H 0.067 0.933 12 C -0.180 4.180 13 C -0.070 4.070 14 N -0.290 5.290 15 C -0.086 4.086 16 C -0.149 4.149 17 C -0.151 4.151 18 C 0.024 3.976 19 H 0.062 0.938 20 N -0.286 5.286 21 H 0.071 0.929 22 H 0.036 0.964 23 H 0.041 0.959 24 H 0.097 0.903 25 H 0.083 0.917 26 H 0.049 0.951 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.062 0.938 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 14.356 -10.233 3.490 17.972 hybrid contribution 0.288 0.530 -0.695 0.921 sum 14.644 -9.703 2.795 17.788 Atomic orbital electron populations 1.70083 1.08268 1.27629 1.53987 1.25993 0.95569 1.03237 0.95032 0.85683 0.79408 0.78705 0.78905 1.19397 1.21442 1.17213 1.21307 0.91588 0.92821 1.47953 0.94807 1.19574 0.94621 0.93436 0.96388 1.21404 0.92226 0.95299 0.91794 0.93301 1.22310 0.96037 0.96999 1.02669 1.22060 1.00516 0.94907 0.89501 1.64585 1.08064 1.25254 1.31132 1.22851 1.00171 0.87758 0.97841 1.22522 0.93597 0.99614 0.99184 1.22083 0.98640 0.98015 0.96369 1.22995 0.85519 0.90998 0.98053 0.93752 1.61273 1.60394 1.02398 1.04570 0.92931 0.96398 0.95883 0.90337 0.91660 0.95136 0.89170 0.89116 0.93838 0.90107 0.89513 0.91305 0.90763 0.84147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.98 13.96 21.45 0.30 -61.68 16 2 C 0.00 -0.19 5.47 84.66 0.46 0.27 16 3 Si 0.95 45.43 27.47 68.60 1.88 47.31 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.25 -11.03 6.54 99.48 0.65 -10.38 16 7 C -0.50 -29.41 9.35 25.60 0.24 -29.17 16 8 H 0.03 2.24 7.99 -2.91 -0.02 2.22 16 9 C 0.00 -0.12 3.62 29.85 0.11 -0.02 16 10 C 0.10 4.13 2.43 44.73 0.11 4.24 16 11 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 12 C -0.14 -4.39 5.48 30.78 0.17 -4.23 16 13 C 0.06 1.56 5.93 86.75 0.51 2.07 16 14 N -0.56 -15.34 5.01 -874.55 -4.38 -19.73 16 15 C 0.04 0.88 6.70 87.01 0.58 1.46 16 16 C -0.11 -2.13 7.05 32.03 0.23 -1.90 16 17 C -0.11 -2.93 6.83 31.34 0.21 -2.71 16 18 C 0.22 7.06 2.80 128.96 0.36 7.42 16 19 H 0.04 1.52 7.99 -2.39 -0.02 1.50 16 20 N -0.66 -25.86 6.23 -476.93 -2.97 -28.83 16 21 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 22 H 0.02 0.84 7.20 -2.38 -0.02 0.82 16 23 H 0.02 1.05 7.57 -2.39 -0.02 1.03 16 24 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 25 H 0.06 2.06 8.13 -2.39 -0.02 2.04 16 26 H 0.03 0.82 8.03 -2.39 -0.02 0.80 16 27 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 28 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.04 0.86 8.13 -2.39 -0.02 0.84 16 30 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.07 1.86 8.14 -2.39 -0.02 1.85 16 34 H 0.34 13.36 8.79 -89.69 -0.79 12.57 16 Total: -1.00 -67.21 266.34 -1.97 -69.18 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.21 Total: 16.32 kcal Atomic # 6 Polarization: -25.56 SS G_CDS: 2.99 Total: -22.58 kcal Atomic # 7 Polarization: -103.18 SS G_CDS: -7.05 Total: -110.23 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.88 Total: 47.31 kcal Total: -67.21 -1.97 -69.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075569624.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.258 kcal (2) G-P(sol) polarization free energy of solvation -67.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds