Wall clock time and date at job start Mon Mar 30 2020 02:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99623 * 2 1 4 4 H 1.48503 * 109.47169 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47193 * 300.00311 * 3 2 1 6 6 H 1.48500 * 109.47243 * 60.00078 * 3 2 1 7 7 C 1.37876 * 120.00336 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99727 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99955 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47076 * 180.02562 * 9 7 2 11 11 C 1.46597 * 111.00051 * 293.95231 * 10 9 7 12 12 C 1.53707 * 110.96455 * 180.02562 * 11 10 9 13 13 N 1.45475 * 107.57369 * 304.05335 * 12 11 10 14 14 C 1.46422 * 117.87162 * 183.49340 * 13 12 11 15 15 C 1.54884 * 105.71997 * 207.61878 * 14 13 12 16 16 C 1.55406 * 105.05978 * 4.02531 * 15 14 13 17 17 C 1.48796 * 109.30735 * 63.26715 * 13 12 11 18 18 H 1.08996 * 111.10741 * 53.84024 * 17 13 12 19 19 C 1.47560 * 111.00035 * 60.11022 * 10 9 7 20 20 H 0.96999 * 120.00477 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47006 * 59.99862 * 9 7 2 22 22 H 1.09002 * 109.46864 * 300.00257 * 9 7 2 23 23 H 1.09006 * 109.18037 * 59.63714 * 11 10 9 24 24 H 1.09005 * 109.18119 * 300.40772 * 11 10 9 25 25 H 1.08998 * 109.84126 * 184.53606 * 12 11 10 26 26 H 1.08996 * 109.89611 * 63.60301 * 12 11 10 27 27 H 1.09004 * 110.21727 * 88.57212 * 14 13 12 28 28 H 1.09004 * 110.25271 * 326.68403 * 14 13 12 29 29 H 1.09002 * 110.34165 * 245.10017 * 15 14 13 30 30 H 1.09000 * 110.34048 * 122.95222 * 15 14 13 31 31 H 1.09007 * 110.92619 * 140.39589 * 16 15 14 32 32 H 1.08995 * 110.92968 * 264.04957 * 16 15 14 33 33 H 1.09004 * 109.85985 * 57.57864 * 19 10 9 34 34 H 1.08994 * 109.86651 * 296.55157 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2059 -3.6156 -0.0005 11 6 2.9696 -3.6539 -1.2513 12 6 3.9677 -4.8227 -1.2507 13 7 4.8113 -4.6793 -0.0742 14 6 5.9019 -5.6393 0.1073 15 6 6.1366 -5.7239 1.6359 16 6 5.0332 -4.8277 2.2640 17 6 3.9732 -4.7978 1.1496 18 1 3.3916 -5.7196 1.1393 19 6 3.0713 -3.5714 1.1938 20 1 -0.4851 0.8400 0.0004 21 1 0.6242 -2.5567 -0.8903 22 1 0.6249 -2.5570 0.8897 23 1 3.5150 -2.7171 -1.3666 24 1 2.2809 -3.7715 -2.0880 25 1 4.5802 -4.7867 -2.1516 26 1 3.4299 -5.7698 -1.2070 27 1 6.8033 -5.2843 -0.3924 28 1 5.6143 -6.6154 -0.2836 29 1 7.1252 -5.3412 1.8892 30 1 6.0299 -6.7529 1.9792 31 1 4.6323 -5.2815 3.1704 32 1 5.4133 -3.8266 2.4668 33 1 2.4593 -3.5941 2.0956 34 1 3.6770 -2.6654 1.1790 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082462827.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:15 Heat of formation + Delta-G solvation = -10.848082 kcal Electronic energy + Delta-G solvation = -14542.073026 eV Core-core repulsion = 12280.601171 eV Total energy + Delta-G solvation = -2261.471855 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.83832 -37.55451 -34.73243 -33.48738 -31.19551 -29.38846 -27.92895 -25.46381 -23.94181 -22.45025 -21.58485 -20.70345 -18.52870 -17.00763 -16.66681 -16.47162 -15.81309 -15.68192 -15.40321 -14.74067 -14.33831 -13.71519 -13.57953 -13.38890 -13.14528 -12.78788 -12.60228 -12.35532 -12.21906 -12.02477 -11.94716 -11.75468 -11.57219 -11.41656 -11.28067 -10.62124 -9.23903 -8.99309 -8.16178 -6.36065 1.34642 1.35745 1.48455 2.36562 3.05366 3.07733 3.28617 3.74447 3.85576 4.07777 4.27886 4.35233 4.42837 4.46669 4.52011 4.69744 4.78744 4.84938 4.95641 4.99508 5.04523 5.12334 5.21043 5.23756 5.28458 5.35515 5.37009 5.72385 6.01856 6.04843 6.21961 6.42534 6.55389 6.84737 7.35227 8.86087 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.043124 B = 0.008537 C = 0.008156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.139655 B = 3279.195237 C = 3432.419562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.011 3.989 3 Si 0.959 3.041 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.553 4.553 8 H 0.053 0.947 9 C 0.203 3.797 10 N -0.553 5.553 11 C 0.071 3.929 12 C 0.076 3.924 13 N -0.561 5.561 14 C 0.049 3.951 15 C -0.117 4.117 16 C -0.113 4.113 17 C 0.073 3.927 18 H 0.056 0.944 19 C 0.085 3.915 20 H 0.266 0.734 21 H 0.004 0.996 22 H 0.006 0.994 23 H 0.018 0.982 24 H 0.063 0.937 25 H 0.089 0.911 26 H 0.039 0.961 27 H 0.080 0.920 28 H 0.044 0.956 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.588 -10.872 1.844 15.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.188 4.188 3 Si 0.784 3.216 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.592 4.592 8 H 0.071 0.929 9 C 0.076 3.924 10 N -0.277 5.277 11 C -0.058 4.058 12 C -0.052 4.052 13 N -0.287 5.287 14 C -0.078 4.078 15 C -0.155 4.155 16 C -0.151 4.151 17 C -0.035 4.035 18 H 0.073 0.927 19 C -0.044 4.044 20 H 0.075 0.925 21 H 0.022 0.978 22 H 0.024 0.976 23 H 0.036 0.964 24 H 0.082 0.918 25 H 0.108 0.892 26 H 0.057 0.943 27 H 0.099 0.901 28 H 0.063 0.937 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 11.403 -10.735 1.757 15.759 hybrid contribution -0.122 1.200 -0.237 1.229 sum 11.281 -9.535 1.520 14.849 Atomic orbital electron populations 1.70069 1.07518 1.27852 1.51246 1.25822 0.95640 1.02849 0.94523 0.85499 0.78787 0.79357 0.77994 1.19486 1.20168 1.20089 1.21974 0.93218 0.92986 1.51018 0.92921 1.19361 0.91061 0.86709 0.95280 1.62085 1.18482 1.44653 1.02440 1.21910 0.94745 0.96987 0.92162 1.21912 0.93430 0.96315 0.93576 1.62749 1.11329 1.51986 1.02649 1.22607 0.94121 0.93448 0.97617 1.22630 0.99335 1.00388 0.93150 1.22343 0.95129 1.00727 0.96912 1.22594 0.93478 0.96379 0.91042 0.92656 1.21762 0.93677 0.96241 0.92707 0.92540 0.97761 0.97633 0.96411 0.91839 0.89226 0.94275 0.90123 0.93722 0.89856 0.89754 0.89424 0.91719 0.92138 0.95797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.34 13.29 21.45 0.28 -56.05 16 2 C 0.01 0.63 5.46 84.65 0.46 1.09 16 3 Si 0.96 45.21 29.54 68.60 2.03 47.24 16 4 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.55 -31.93 7.64 25.60 0.20 -31.74 16 8 H 0.05 3.07 5.98 -2.91 -0.02 3.05 16 9 C 0.20 11.16 5.11 85.56 0.44 11.59 16 10 N -0.55 -25.33 4.80 -899.76 -4.32 -29.65 16 11 C 0.07 2.93 5.41 86.60 0.47 3.40 16 12 C 0.08 2.45 6.04 86.81 0.52 2.97 16 13 N -0.56 -17.65 4.66 -865.52 -4.03 -21.68 16 14 C 0.05 1.14 6.89 87.04 0.60 1.74 16 15 C -0.12 -2.31 6.98 32.07 0.22 -2.08 16 16 C -0.11 -2.81 6.63 31.70 0.21 -2.60 16 17 C 0.07 2.35 2.76 44.59 0.12 2.47 16 18 H 0.06 1.78 8.09 -2.39 -0.02 1.76 16 19 C 0.08 3.50 4.88 85.94 0.42 3.92 16 20 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 21 H 0.00 0.25 8.12 -2.39 -0.02 0.23 16 22 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 23 H 0.02 0.83 6.82 -2.38 -0.02 0.81 16 24 H 0.06 2.58 8.14 -2.38 -0.02 2.56 16 25 H 0.09 2.49 8.14 -2.39 -0.02 2.48 16 26 H 0.04 1.21 8.08 -2.39 -0.02 1.19 16 27 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.04 0.95 8.07 -2.38 -0.02 0.93 16 29 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 32 H 0.06 1.76 8.11 -2.39 -0.02 1.74 16 33 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 34 H 0.02 1.11 6.64 -2.39 -0.02 1.10 16 Total: -1.00 -64.39 264.75 -1.33 -65.71 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: 1.05 Total: 3.66 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: 3.66 Total: -9.22 kcal Atomic # 7 Polarization: -99.31 SS G_CDS: -8.07 Total: -107.38 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -64.39 -1.33 -65.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082462827.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.867 kcal (2) G-P(sol) polarization free energy of solvation -64.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds