Wall clock time and date at job start Mon Mar 30 2020 02:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46832 * 2 1 4 4 H 1.08998 * 110.42812 * 52.61181 * 3 2 1 5 5 C 1.50047 * 110.46541 * 290.37309 * 3 2 1 6 6 H 1.08995 * 109.53369 * 321.59799 * 5 3 2 7 7 C 1.50727 * 126.72483 * 97.54482 * 5 3 2 8 8 N 1.50188 * 102.13848 * 155.04756 * 7 5 3 9 9 C 1.49101 * 107.53558 * 335.02812 * 8 7 5 10 10 C 1.50127 * 105.03614 * 351.99723 * 9 8 7 11 11 H 1.08996 * 110.06473 * 280.32578 * 10 9 8 12 12 C 1.50744 * 126.53380 * 143.83879 * 10 9 8 13 13 N 1.49301 * 110.37870 * 174.93222 * 3 2 1 14 14 C 1.36939 * 126.10962 * 306.31394 * 13 3 2 15 15 H 1.08003 * 119.99871 * 348.42240 * 14 13 3 16 16 C 1.38816 * 119.99915 * 168.69719 * 14 13 3 17 17 N 1.31613 * 119.99951 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00026 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46746 * 89.99689 * 18 16 14 20 20 H 1.48497 * 109.47090 * 210.00069 * 18 16 14 21 21 H 1.48501 * 109.47077 * 330.00262 * 18 16 14 22 22 H 1.08997 * 109.46931 * 65.45983 * 1 2 3 23 23 H 1.08997 * 109.46990 * 185.45862 * 1 2 3 24 24 H 1.08994 * 109.46980 * 305.46096 * 1 2 3 25 25 H 1.09001 * 109.46890 * 240.00384 * 2 1 3 26 26 H 1.09002 * 109.46894 * 119.99851 * 2 1 3 27 27 H 1.08998 * 110.87176 * 273.21550 * 7 5 3 28 28 H 1.09003 * 110.86565 * 36.88485 * 7 5 3 29 29 H 1.00897 * 111.00031 * 213.03327 * 8 7 5 30 30 H 1.09002 * 110.13084 * 233.13708 * 9 8 7 31 31 H 1.09000 * 110.34439 * 110.96313 * 9 8 7 32 32 H 1.08988 * 110.86345 * 87.55992 * 12 10 9 33 33 H 1.09003 * 111.03673 * 323.97936 * 12 10 9 34 34 H 0.96998 * 120.00340 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5820 2.0079 0.8116 5 6 1.7534 2.1002 -1.3178 6 1 1.9040 1.3822 -2.1239 7 6 0.5905 3.0032 -1.6405 8 7 1.1300 3.8176 -2.7813 9 6 2.6162 3.8287 -2.6619 10 6 2.9053 3.1849 -1.3368 11 1 2.7547 3.9035 -0.5312 12 6 4.0671 2.2807 -1.0129 13 7 3.5276 1.4680 0.1236 14 6 4.2671 0.8533 1.0986 15 1 3.7780 0.4458 1.9711 16 6 5.6459 0.7589 0.9682 17 7 6.2423 1.2597 -0.0928 18 14 6.6547 -0.0791 2.2984 19 1 6.7755 -1.5267 1.9900 20 1 8.0078 0.5304 2.3513 21 1 5.9826 0.0928 3.6114 22 1 -0.3633 0.4268 -0.9348 23 1 -0.3633 -1.0230 0.0978 24 1 -0.3633 0.5962 0.8370 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 -0.2769 2.4223 -1.9541 28 1 0.3458 3.6400 -0.7903 29 1 0.7537 4.7536 -2.7671 30 1 2.9859 4.8540 -2.6746 31 1 3.0656 3.2521 -3.4703 32 1 4.9344 2.8608 -0.6980 33 1 4.3157 1.6437 -1.8618 34 1 7.2058 1.1941 -0.1838 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085287461.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:36 Heat of formation + Delta-G solvation = 42.795291 kcal Electronic energy + Delta-G solvation = -14766.265636 eV Core-core repulsion = 12507.119932 eV Total energy + Delta-G solvation = -2259.145704 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.69659 -35.37475 -33.05697 -31.46771 -28.80447 -28.63296 -25.49111 -24.79184 -21.77977 -21.05806 -19.68759 -18.85001 -16.54223 -15.84657 -15.38091 -14.48099 -13.87490 -13.60377 -13.50299 -12.82954 -12.70108 -12.48545 -11.79893 -11.59566 -11.19849 -11.09731 -11.01548 -10.74512 -10.52478 -10.45490 -10.10788 -9.97195 -9.85874 -9.55731 -9.18333 -8.59461 -8.23099 -6.80518 -5.70379 -3.05148 3.40588 3.45709 3.47388 4.45152 4.47620 4.72175 5.12366 5.32994 5.49087 5.64965 5.71317 5.73672 5.83299 5.97305 6.04940 6.09064 6.21436 6.30212 6.36338 6.48148 6.49532 6.57530 6.74278 6.78094 6.93395 7.06641 7.22020 7.50668 7.58738 7.60190 7.79988 8.23746 9.17698 9.80059 10.50897 11.41552 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.036046 B = 0.010962 C = 0.008742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.600957 B = 2553.759553 C = 3201.999307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C 0.179 3.821 4 H 0.031 0.969 5 C -0.123 4.123 6 H 0.078 0.922 7 C 0.066 3.934 8 N -0.686 5.686 9 C 0.066 3.934 10 C -0.157 4.157 11 H 0.063 0.937 12 C 0.194 3.806 13 N -0.602 5.602 14 C -0.220 4.220 15 H 0.076 0.924 16 C -0.009 4.009 17 N -0.920 5.920 18 Si 0.909 3.091 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.282 1.282 22 H 0.049 0.951 23 H 0.044 0.956 24 H 0.047 0.953 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.042 0.958 29 H 0.330 0.670 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.025 0.975 34 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.334 3.175 -2.580 10.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C 0.073 3.927 4 H 0.048 0.952 5 C -0.143 4.143 6 H 0.096 0.904 7 C -0.063 4.063 8 N -0.314 5.314 9 C -0.063 4.063 10 C -0.178 4.178 11 H 0.082 0.918 12 C 0.070 3.930 13 N -0.328 5.328 14 C -0.349 4.349 15 H 0.093 0.907 16 C -0.205 4.205 17 N -0.568 5.568 18 Si 0.740 3.260 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.207 1.207 22 H 0.068 0.932 23 H 0.063 0.937 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.061 0.939 29 H 0.144 0.856 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.043 0.957 34 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -9.118 2.617 -3.024 9.956 hybrid contribution 0.742 0.094 1.432 1.616 sum -8.376 2.711 -1.592 8.946 Atomic orbital electron populations 1.21763 0.97135 1.00470 1.01063 1.21864 0.93709 0.98870 1.02111 1.20170 0.86501 0.93077 0.92956 0.95184 1.22215 0.95183 0.97467 0.99425 0.90408 1.22063 0.96972 0.95360 0.91877 1.63323 1.05921 1.17530 1.44626 1.21681 0.87734 0.99478 0.97390 1.22998 1.00892 0.97280 0.96580 0.91812 1.20648 0.92231 0.90411 0.89730 1.45837 0.98520 1.59125 1.29331 1.18993 0.88771 1.29909 0.97208 0.90665 1.24836 0.96741 1.01168 0.97756 1.69910 1.08806 1.49924 1.28147 0.86153 0.79689 0.79211 0.80936 1.21618 1.21732 1.20728 0.93161 0.93681 0.93356 0.92514 0.92008 0.90660 0.93949 0.85570 0.92943 0.90637 0.90268 0.95677 0.93754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.70 37.16 0.36 -1.82 16 2 C -0.13 -2.41 5.47 -26.73 -0.15 -2.55 16 3 C 0.18 3.74 3.05 -67.84 -0.21 3.53 16 4 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 5 C -0.12 -2.27 1.71 -90.34 -0.15 -2.43 16 6 H 0.08 1.56 7.81 -51.93 -0.41 1.15 16 7 C 0.07 1.00 7.28 -3.12 -0.02 0.98 16 8 N -0.69 -10.13 7.55 -112.29 -0.85 -10.98 16 9 C 0.07 1.08 7.39 -4.03 -0.03 1.05 16 10 C -0.16 -3.06 2.95 -90.30 -0.27 -3.33 16 11 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 12 C 0.19 4.74 5.38 -3.35 -0.02 4.73 16 13 N -0.60 -15.39 3.30 -163.77 -0.54 -15.93 16 14 C -0.22 -6.13 9.65 -15.06 -0.15 -6.27 16 15 H 0.08 2.04 7.77 -52.48 -0.41 1.63 16 16 C -0.01 -0.25 5.48 -17.43 -0.10 -0.34 16 17 N -0.92 -27.06 10.50 55.49 0.58 -26.48 16 18 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H 0.05 0.70 7.04 -51.93 -0.37 0.34 16 23 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 26 H 0.06 1.26 7.73 -51.93 -0.40 0.86 16 27 H 0.08 1.05 7.59 -51.93 -0.39 0.66 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.33 4.09 8.95 -39.29 -0.35 3.74 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.08 2.15 6.72 -51.94 -0.35 1.80 16 33 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 265.28 15.07 4.00 4.00 Total: -1.00 -29.30 265.28 -8.16 -37.46 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -5.60 Total: 1.20 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -0.72 Total: -6.46 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: -0.81 Total: -53.39 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.30 -8.16 -37.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085287461.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.257 kcal (2) G-P(sol) polarization free energy of solvation -29.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds