Wall clock time and date at job start Mon Mar 30 2020 02:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46832 * 2 1 4 4 H 1.08998 * 110.42812 * 52.61181 * 3 2 1 5 5 C 1.50047 * 110.46541 * 290.37309 * 3 2 1 6 6 H 1.08995 * 109.53369 * 321.59799 * 5 3 2 7 7 C 1.50727 * 126.72483 * 97.54482 * 5 3 2 8 8 N 1.50188 * 102.13848 * 155.04756 * 7 5 3 9 9 C 1.49101 * 107.53558 * 335.02812 * 8 7 5 10 10 C 1.50127 * 105.03614 * 351.99723 * 9 8 7 11 11 H 1.08996 * 110.06473 * 280.32578 * 10 9 8 12 12 C 1.50744 * 126.53380 * 143.83879 * 10 9 8 13 13 N 1.49301 * 110.37870 * 174.93222 * 3 2 1 14 14 C 1.36939 * 126.10962 * 306.31394 * 13 3 2 15 15 H 1.08003 * 119.99871 * 348.42240 * 14 13 3 16 16 C 1.38816 * 119.99915 * 168.69719 * 14 13 3 17 17 N 1.31613 * 119.99951 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00026 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46746 * 89.99689 * 18 16 14 20 20 H 1.48497 * 109.47090 * 210.00069 * 18 16 14 21 21 H 1.48501 * 109.47077 * 330.00262 * 18 16 14 22 22 H 1.08997 * 109.46931 * 65.45983 * 1 2 3 23 23 H 1.08997 * 109.46990 * 185.45862 * 1 2 3 24 24 H 1.08994 * 109.46980 * 305.46096 * 1 2 3 25 25 H 1.09001 * 109.46890 * 240.00384 * 2 1 3 26 26 H 1.09002 * 109.46894 * 119.99851 * 2 1 3 27 27 H 1.08998 * 110.87176 * 273.21550 * 7 5 3 28 28 H 1.09003 * 110.86565 * 36.88485 * 7 5 3 29 29 H 1.00897 * 111.00031 * 213.03327 * 8 7 5 30 30 H 1.09002 * 110.13084 * 233.13708 * 9 8 7 31 31 H 1.09000 * 110.34439 * 110.96313 * 9 8 7 32 32 H 1.08988 * 110.86345 * 87.55992 * 12 10 9 33 33 H 1.09003 * 111.03673 * 323.97936 * 12 10 9 34 34 H 0.96998 * 120.00340 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5820 2.0079 0.8116 5 6 1.7534 2.1002 -1.3178 6 1 1.9040 1.3822 -2.1239 7 6 0.5905 3.0032 -1.6405 8 7 1.1300 3.8176 -2.7813 9 6 2.6162 3.8287 -2.6619 10 6 2.9053 3.1849 -1.3368 11 1 2.7547 3.9035 -0.5312 12 6 4.0671 2.2807 -1.0129 13 7 3.5276 1.4680 0.1236 14 6 4.2671 0.8533 1.0986 15 1 3.7780 0.4458 1.9711 16 6 5.6459 0.7589 0.9682 17 7 6.2423 1.2597 -0.0928 18 14 6.6547 -0.0791 2.2984 19 1 6.7755 -1.5267 1.9900 20 1 8.0078 0.5304 2.3513 21 1 5.9826 0.0928 3.6114 22 1 -0.3633 0.4268 -0.9348 23 1 -0.3633 -1.0230 0.0978 24 1 -0.3633 0.5962 0.8370 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 -0.2769 2.4223 -1.9541 28 1 0.3458 3.6400 -0.7903 29 1 0.7537 4.7536 -2.7671 30 1 2.9859 4.8540 -2.6746 31 1 3.0656 3.2521 -3.4703 32 1 4.9344 2.8608 -0.6980 33 1 4.3157 1.6437 -1.8618 34 1 7.2058 1.1941 -0.1838 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085287461.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:36 Heat of formation + Delta-G solvation = 22.566422 kcal Electronic energy + Delta-G solvation = -14767.142825 eV Core-core repulsion = 12507.119932 eV Total energy + Delta-G solvation = -2260.022894 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.25799 -36.97534 -34.83297 -33.25673 -30.56777 -30.08450 -27.01303 -26.66227 -23.49976 -22.54877 -21.28466 -20.43505 -18.59947 -17.40618 -16.94314 -16.23186 -15.61830 -15.16783 -15.01640 -14.36704 -14.34733 -13.83388 -13.44762 -13.18349 -12.86162 -12.79641 -12.69565 -12.51188 -12.20318 -11.95809 -11.89754 -11.64860 -11.57770 -11.43203 -10.86170 -10.62715 -9.45044 -8.87900 -7.85430 -5.22203 1.43745 1.45632 1.54056 2.46733 3.15710 3.22717 3.33776 3.44506 3.84446 4.19345 4.28295 4.38883 4.44237 4.58634 4.63054 4.67205 4.76920 4.85119 4.89480 5.02660 5.06429 5.20141 5.22510 5.29538 5.43968 5.50942 5.55082 5.65338 5.68524 5.73304 6.17931 6.52416 7.03931 7.71113 8.43012 9.25481 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.036046 B = 0.010962 C = 0.008742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.600957 B = 2553.759553 C = 3201.999307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.121 4.121 3 C 0.174 3.826 4 H 0.034 0.966 5 C -0.108 4.108 6 H 0.060 0.940 7 C 0.075 3.925 8 N -0.681 5.681 9 C 0.074 3.926 10 C -0.151 4.151 11 H 0.060 0.940 12 C 0.202 3.798 13 N -0.626 5.626 14 C -0.230 4.230 15 H 0.078 0.922 16 C -0.068 4.068 17 N -0.951 5.951 18 Si 0.975 3.025 19 H -0.287 1.287 20 H -0.294 1.294 21 H -0.269 1.269 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.038 0.962 26 H 0.041 0.959 27 H 0.097 0.903 28 H 0.057 0.943 29 H 0.350 0.650 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.043 0.957 33 H -0.006 1.006 34 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.588 3.661 -2.419 12.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.160 4.160 3 C 0.069 3.931 4 H 0.052 0.948 5 C -0.128 4.128 6 H 0.078 0.922 7 C -0.053 4.053 8 N -0.311 5.311 9 C -0.056 4.056 10 C -0.172 4.172 11 H 0.079 0.921 12 C 0.077 3.923 13 N -0.352 5.352 14 C -0.359 4.359 15 H 0.096 0.904 16 C -0.260 4.260 17 N -0.600 5.600 18 Si 0.803 3.197 19 H -0.215 1.215 20 H -0.221 1.221 21 H -0.194 1.194 22 H 0.083 0.917 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.115 0.885 28 H 0.075 0.925 29 H 0.166 0.834 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.012 0.988 34 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -11.424 3.115 -2.860 12.181 hybrid contribution 1.427 -0.060 1.388 1.992 sum -9.997 3.055 -1.472 10.556 Atomic orbital electron populations 1.21670 0.93228 1.02052 1.02345 1.21771 0.97044 0.96992 1.00216 1.20352 0.83804 0.94578 0.94382 0.94831 1.22124 0.96601 0.96847 0.97227 0.92182 1.22081 0.95883 0.94870 0.92512 1.63271 1.04492 1.18995 1.44293 1.21599 0.89027 1.00191 0.94767 1.22789 0.98714 0.97114 0.98588 0.92111 1.20310 0.93115 0.90380 0.88446 1.46189 1.00808 1.59273 1.28956 1.19327 0.89377 1.29276 0.97905 0.90427 1.25653 0.97920 1.02372 1.00091 1.70128 1.08493 1.51376 1.30014 0.85126 0.77799 0.77844 0.78882 1.21460 1.22058 1.19374 0.91697 0.92018 0.92186 0.94323 0.94045 0.88459 0.92488 0.83397 0.90760 0.91572 0.93896 0.98816 0.94419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 9.70 71.98 0.70 -2.93 16 2 C -0.12 -4.54 5.47 30.59 0.17 -4.37 16 3 C 0.17 7.17 3.05 43.50 0.13 7.30 16 4 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 5 C -0.11 -3.85 1.71 -10.61 -0.02 -3.86 16 6 H 0.06 2.36 7.81 -2.39 -0.02 2.34 16 7 C 0.08 2.00 7.28 84.92 0.62 2.61 16 8 N -0.68 -17.73 7.55 -509.19 -3.84 -21.57 16 9 C 0.07 2.26 7.39 84.95 0.63 2.89 16 10 C -0.15 -5.85 2.95 -10.58 -0.03 -5.88 16 11 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 12 C 0.20 10.30 5.38 85.01 0.46 10.75 16 13 N -0.63 -32.82 3.30 -672.04 -2.22 -35.04 16 14 C -0.23 -13.08 9.65 84.03 0.81 -12.26 16 15 H 0.08 4.26 7.77 -2.91 -0.02 4.24 16 16 C -0.07 -3.91 5.48 84.86 0.47 -3.45 16 17 N -0.95 -58.23 10.50 21.65 0.23 -58.00 16 18 Si 0.98 46.60 29.55 68.60 2.03 48.63 16 19 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 20 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 22 H 0.06 1.57 7.04 -2.39 -0.02 1.55 16 23 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.04 1.56 7.93 -2.39 -0.02 1.54 16 26 H 0.04 1.69 7.73 -2.39 -0.02 1.67 16 27 H 0.10 2.24 7.59 -2.39 -0.02 2.23 16 28 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.35 7.15 8.95 -89.70 -0.80 6.34 16 30 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.04 2.46 6.72 -2.39 -0.02 2.44 16 33 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 34 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -65.23 265.28 0.38 -64.85 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: 0.26 Total: 10.35 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: 3.93 Total: -9.21 kcal Atomic # 7 Polarization: -108.78 SS G_CDS: -5.84 Total: -114.62 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -65.23 0.38 -64.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085287461.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.415 kcal (2) G-P(sol) polarization free energy of solvation -65.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds