Wall clock time and date at job start Mon Mar 30 2020 02:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 110.33702 * 2 1 4 4 C 1.50130 * 110.37506 * 237.73554 * 2 1 3 5 5 H 1.09003 * 110.06398 * 160.84159 * 4 2 1 6 6 C 1.50643 * 126.62284 * 24.61938 * 4 2 1 7 7 N 1.50190 * 102.20505 * 205.37813 * 6 4 2 8 8 C 1.49716 * 107.64074 * 25.38732 * 7 6 4 9 9 C 1.50113 * 104.73334 * 7.47236 * 8 7 6 10 10 H 1.09000 * 110.05834 * 79.73234 * 9 8 7 11 11 C 1.50732 * 126.57942 * 216.25117 * 9 8 7 12 12 N 1.49301 * 110.37716 * 122.26647 * 2 1 3 13 13 C 1.36933 * 126.11217 * 291.39769 * 12 2 1 14 14 H 1.07997 * 119.99713 * 334.76542 * 13 12 2 15 15 C 1.38804 * 119.99717 * 154.77157 * 13 12 2 16 16 N 1.31630 * 120.00108 * 153.78054 * 15 13 12 17 17 Si 1.86800 * 120.00308 * 333.77210 * 15 13 12 18 18 H 1.48507 * 109.46850 * 95.08586 * 17 15 13 19 19 H 1.48499 * 109.47566 * 215.08526 * 17 15 13 20 20 H 1.48501 * 109.47208 * 335.09002 * 17 15 13 21 21 H 1.08999 * 109.47435 * 60.69783 * 1 2 3 22 22 H 1.08999 * 109.47195 * 180.69747 * 1 2 3 23 23 H 1.09004 * 109.47044 * 300.69877 * 1 2 3 24 24 H 1.09004 * 109.47027 * 59.30126 * 3 2 1 25 25 H 1.08999 * 109.46956 * 179.29849 * 3 2 1 26 26 H 1.08995 * 109.47415 * 299.30086 * 3 2 1 27 27 H 1.08998 * 110.77074 * 87.22251 * 6 4 2 28 28 H 1.09007 * 110.90136 * 323.58931 * 6 4 2 29 29 H 1.00899 * 110.99747 * 147.04364 * 7 6 4 30 30 H 1.09004 * 110.38088 * 248.66145 * 8 7 6 31 31 H 1.08995 * 110.47867 * 126.34042 * 8 7 6 32 32 H 1.09000 * 110.85844 * 36.64594 * 11 9 8 33 33 H 1.08995 * 111.03942 * 273.06319 * 11 9 8 34 34 H 0.96999 * 119.99871 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0617 1.4346 0.0000 4 6 2.0527 -0.7513 -1.1901 5 1 3.0896 -0.4745 -1.3811 6 6 1.3352 -0.9794 -2.4949 7 7 1.9832 -2.2375 -2.9978 8 6 2.5049 -2.9852 -1.8102 9 6 1.9811 -2.2300 -0.6234 10 1 0.9411 -2.4989 -0.4384 11 6 2.6965 -2.0024 0.6837 12 7 2.0499 -0.7472 1.1834 13 6 1.9525 -0.3552 2.4918 14 1 1.8537 0.6923 2.7358 15 6 1.9811 -1.3040 3.5045 16 7 2.3999 -0.9707 4.7071 17 14 1.4251 -3.0539 3.1610 18 1 2.6052 -3.8921 2.8289 19 1 0.7499 -3.6040 4.3637 20 1 0.4782 -3.0568 2.0169 21 1 -0.3634 0.5029 -0.8961 22 1 -0.3633 -1.0276 0.0125 23 1 -0.3633 0.5247 0.8837 24 1 1.6960 1.9576 0.8837 25 1 3.1515 1.4181 0.0126 26 1 1.7165 1.9501 -0.8961 27 1 1.5098 -0.1513 -3.1819 28 1 0.2683 -1.1310 -2.3307 29 1 1.3264 -2.7992 -3.5186 30 1 3.5950 -2.9842 -1.8100 31 1 2.1269 -4.0074 -1.8070 32 1 3.7636 -1.8511 0.5209 33 1 2.5241 -2.8288 1.3732 34 1 2.4195 -1.6337 5.4149 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085289260.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:02 Heat of formation + Delta-G solvation = 55.415538 kcal Electronic energy + Delta-G solvation = -15113.928372 eV Core-core repulsion = 12855.329923 eV Total energy + Delta-G solvation = -2258.598449 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.20723 -35.66627 -32.67576 -31.52026 -29.22372 -27.97013 -26.66946 -24.79689 -23.50792 -21.13846 -19.88322 -18.16218 -16.65997 -16.18869 -15.49215 -14.71738 -13.88000 -13.77696 -13.48921 -13.06020 -12.56566 -12.29673 -12.21012 -12.02325 -11.56584 -11.35746 -11.20770 -10.96522 -10.88268 -10.50012 -10.28168 -10.11351 -9.97573 -9.50598 -9.25238 -8.51114 -8.40232 -7.01859 -5.96645 -3.23809 3.32576 3.47449 3.51263 4.26709 4.42310 4.53800 4.67696 5.07156 5.31196 5.42377 5.55600 5.72345 5.77078 5.86027 5.88988 5.95563 6.06294 6.15376 6.24246 6.36141 6.43363 6.48044 6.49030 6.59935 6.63172 6.71406 6.88833 6.97856 7.13316 7.40061 7.72624 8.33464 8.82682 9.69456 10.24367 11.20070 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.035534 B = 0.013839 C = 0.011292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.792938 B = 2022.788142 C = 2478.982925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.194 3.806 3 C -0.140 4.140 4 C -0.114 4.114 5 H 0.082 0.918 6 C 0.064 3.936 7 N -0.682 5.682 8 C 0.064 3.936 9 C -0.153 4.153 10 H 0.073 0.927 11 C 0.142 3.858 12 N -0.601 5.601 13 C -0.233 4.233 14 H 0.089 0.911 15 C 0.026 3.974 16 N -0.902 5.902 17 Si 0.875 3.125 18 H -0.288 1.288 19 H -0.304 1.304 20 H -0.275 1.275 21 H 0.042 0.958 22 H 0.045 0.955 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.043 0.957 27 H 0.078 0.922 28 H 0.048 0.952 29 H 0.332 0.668 30 H 0.078 0.922 31 H 0.055 0.945 32 H 0.038 0.962 33 H 0.045 0.955 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.318 -1.466 -13.221 13.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.107 3.893 3 C -0.199 4.199 4 C -0.134 4.134 5 H 0.100 0.900 6 C -0.064 4.064 7 N -0.310 5.310 8 C -0.065 4.065 9 C -0.173 4.173 10 H 0.092 0.908 11 C 0.018 3.982 12 N -0.328 5.328 13 C -0.360 4.360 14 H 0.106 0.894 15 C -0.173 4.173 16 N -0.545 5.545 17 Si 0.706 3.294 18 H -0.216 1.216 19 H -0.232 1.232 20 H -0.201 1.201 21 H 0.061 0.939 22 H 0.064 0.936 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.097 0.903 28 H 0.066 0.934 29 H 0.146 0.854 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.659 -1.168 -13.132 13.288 hybrid contribution -1.235 -1.521 0.463 2.013 sum -2.895 -2.689 -12.669 13.270 Atomic orbital electron populations 1.22156 0.97276 1.00810 1.00458 1.19590 0.92006 0.91496 0.86207 1.21985 1.00888 0.96605 1.00388 1.22265 1.01144 0.96326 0.93642 0.90015 1.22062 0.96291 0.92759 0.95336 1.63545 1.38945 1.06665 1.21868 1.21807 1.00821 0.95439 0.88459 1.22791 1.01589 0.96611 0.96294 0.90838 1.21047 0.95301 0.90385 0.91506 1.46075 1.64066 1.20988 1.01676 1.18539 1.45425 0.93558 0.78466 0.89371 1.25115 0.99847 0.97460 0.94895 1.69898 1.46785 1.34877 1.02919 0.86939 0.79240 0.86826 0.76360 1.21597 1.23218 1.20090 0.93949 0.93623 0.92321 0.92479 0.92935 0.93835 0.90320 0.93367 0.85384 0.90405 0.92644 0.94415 0.93689 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 7.85 37.16 0.29 -2.42 16 2 C 0.19 3.78 0.90 -131.69 -0.12 3.66 16 3 C -0.14 -2.54 8.48 37.16 0.32 -2.22 16 4 C -0.11 -1.93 2.13 -90.18 -0.19 -2.12 16 5 H 0.08 1.45 7.96 -51.93 -0.41 1.04 16 6 C 0.06 0.89 6.90 -3.16 -0.02 0.87 16 7 N -0.68 -9.17 7.57 -111.85 -0.85 -10.01 16 8 C 0.06 0.94 7.44 -3.69 -0.03 0.91 16 9 C -0.15 -2.75 2.87 -90.14 -0.26 -3.01 16 10 H 0.07 1.42 6.84 -51.93 -0.36 1.07 16 11 C 0.14 3.12 6.15 -3.35 -0.02 3.10 16 12 N -0.60 -14.36 2.68 -156.55 -0.42 -14.78 16 13 C -0.23 -6.51 10.03 -15.06 -0.15 -6.66 16 14 H 0.09 2.62 7.53 -52.49 -0.40 2.22 16 15 C 0.03 0.76 5.40 -17.43 -0.09 0.66 16 16 N -0.90 -27.80 13.97 55.49 0.78 -27.03 16 17 Si 0.87 22.67 24.88 -169.99 -4.23 18.44 16 18 H -0.29 -7.30 6.75 56.52 0.38 -6.92 16 19 H -0.30 -8.00 7.11 56.52 0.40 -7.60 16 20 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 21 H 0.04 0.64 7.75 -51.93 -0.40 0.24 16 22 H 0.04 0.87 6.86 -51.93 -0.36 0.51 16 23 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 24 H 0.06 1.11 7.59 -51.93 -0.39 0.71 16 25 H 0.05 0.97 8.12 -51.93 -0.42 0.55 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.65 7.23 -51.92 -0.38 0.28 16 29 H 0.33 3.74 8.94 -39.29 -0.35 3.39 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 1.08 2.94 -51.93 -0.15 0.92 16 34 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 257.13 15.07 3.87 3.87 Total: -1.00 -30.18 257.13 -6.43 -36.61 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -5.31 Total: 0.13 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -0.28 Total: -7.23 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: -0.49 Total: -51.82 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.23 Total: 18.44 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.18 -6.43 -36.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085289260.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.028 kcal (2) G-P(sol) polarization free energy of solvation -30.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds