Wall clock time and date at job start Mon Mar 30 2020 02:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 110.33702 * 2 1 4 4 C 1.50130 * 110.37506 * 237.73554 * 2 1 3 5 5 H 1.09003 * 110.06398 * 160.84159 * 4 2 1 6 6 C 1.50643 * 126.62284 * 24.61938 * 4 2 1 7 7 N 1.50190 * 102.20505 * 205.37813 * 6 4 2 8 8 C 1.49716 * 107.64074 * 25.38732 * 7 6 4 9 9 C 1.50113 * 104.73334 * 7.47236 * 8 7 6 10 10 H 1.09000 * 110.05834 * 79.73234 * 9 8 7 11 11 C 1.50732 * 126.57942 * 216.25117 * 9 8 7 12 12 N 1.49301 * 110.37716 * 122.26647 * 2 1 3 13 13 C 1.36933 * 126.11217 * 291.39769 * 12 2 1 14 14 H 1.07997 * 119.99713 * 334.76542 * 13 12 2 15 15 C 1.38804 * 119.99717 * 154.77157 * 13 12 2 16 16 N 1.31630 * 120.00108 * 153.78054 * 15 13 12 17 17 Si 1.86800 * 120.00308 * 333.77210 * 15 13 12 18 18 H 1.48507 * 109.46850 * 95.08586 * 17 15 13 19 19 H 1.48499 * 109.47566 * 215.08526 * 17 15 13 20 20 H 1.48501 * 109.47208 * 335.09002 * 17 15 13 21 21 H 1.08999 * 109.47435 * 60.69783 * 1 2 3 22 22 H 1.08999 * 109.47195 * 180.69747 * 1 2 3 23 23 H 1.09004 * 109.47044 * 300.69877 * 1 2 3 24 24 H 1.09004 * 109.47027 * 59.30126 * 3 2 1 25 25 H 1.08999 * 109.46956 * 179.29849 * 3 2 1 26 26 H 1.08995 * 109.47415 * 299.30086 * 3 2 1 27 27 H 1.08998 * 110.77074 * 87.22251 * 6 4 2 28 28 H 1.09007 * 110.90136 * 323.58931 * 6 4 2 29 29 H 1.00899 * 110.99747 * 147.04364 * 7 6 4 30 30 H 1.09004 * 110.38088 * 248.66145 * 8 7 6 31 31 H 1.08995 * 110.47867 * 126.34042 * 8 7 6 32 32 H 1.09000 * 110.85844 * 36.64594 * 11 9 8 33 33 H 1.08995 * 111.03942 * 273.06319 * 11 9 8 34 34 H 0.96999 * 119.99871 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0617 1.4346 0.0000 4 6 2.0527 -0.7513 -1.1901 5 1 3.0896 -0.4745 -1.3811 6 6 1.3352 -0.9794 -2.4949 7 7 1.9832 -2.2375 -2.9978 8 6 2.5049 -2.9852 -1.8102 9 6 1.9811 -2.2300 -0.6234 10 1 0.9411 -2.4989 -0.4384 11 6 2.6965 -2.0024 0.6837 12 7 2.0499 -0.7472 1.1834 13 6 1.9525 -0.3552 2.4918 14 1 1.8537 0.6923 2.7358 15 6 1.9811 -1.3040 3.5045 16 7 2.3999 -0.9707 4.7071 17 14 1.4251 -3.0539 3.1610 18 1 2.6052 -3.8921 2.8289 19 1 0.7499 -3.6040 4.3637 20 1 0.4782 -3.0568 2.0169 21 1 -0.3634 0.5029 -0.8961 22 1 -0.3633 -1.0276 0.0125 23 1 -0.3633 0.5247 0.8837 24 1 1.6960 1.9576 0.8837 25 1 3.1515 1.4181 0.0126 26 1 1.7165 1.9501 -0.8961 27 1 1.5098 -0.1513 -3.1819 28 1 0.2683 -1.1310 -2.3307 29 1 1.3264 -2.7992 -3.5186 30 1 3.5950 -2.9842 -1.8100 31 1 2.1269 -4.0074 -1.8070 32 1 3.7636 -1.8511 0.5209 33 1 2.5241 -2.8288 1.3732 34 1 2.4195 -1.6337 5.4149 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085289260.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:02 Heat of formation + Delta-G solvation = 33.122936 kcal Electronic energy + Delta-G solvation = -15114.895052 eV Core-core repulsion = 12855.329923 eV Total energy + Delta-G solvation = -2259.565129 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.64037 -37.12786 -34.60584 -33.24280 -30.93403 -29.21177 -28.15287 -26.50380 -25.20454 -22.67208 -21.29294 -19.68028 -18.60831 -17.74432 -17.13492 -16.20308 -15.50362 -15.32827 -15.07528 -14.53807 -14.24123 -14.00284 -13.77380 -13.54563 -13.04267 -12.89888 -12.74429 -12.67351 -12.41348 -12.16098 -11.99129 -11.84674 -11.50092 -11.36488 -10.83721 -10.61780 -9.46950 -9.01802 -8.20777 -5.43138 1.23821 1.33930 1.44239 2.39629 2.87762 3.03027 3.15275 3.23871 3.75757 4.04122 4.28582 4.35039 4.37693 4.43614 4.50801 4.60680 4.75806 4.81091 4.85363 4.91486 4.96587 4.99229 5.05349 5.12561 5.17526 5.32788 5.45141 5.59353 5.66472 5.77181 6.13370 6.47520 6.73583 7.52381 8.16839 9.00358 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.035534 B = 0.013839 C = 0.011292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.792938 B = 2022.788142 C = 2478.982925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.183 3.817 3 C -0.135 4.135 4 C -0.102 4.102 5 H 0.075 0.925 6 C 0.072 3.928 7 N -0.678 5.678 8 C 0.070 3.930 9 C -0.148 4.148 10 H 0.064 0.936 11 C 0.133 3.867 12 N -0.620 5.620 13 C -0.216 4.216 14 H 0.056 0.944 15 C -0.034 4.034 16 N -0.951 5.951 17 Si 0.939 3.061 18 H -0.280 1.280 19 H -0.311 1.311 20 H -0.267 1.267 21 H 0.081 0.919 22 H 0.037 0.963 23 H 0.034 0.966 24 H 0.033 0.967 25 H 0.041 0.959 26 H 0.081 0.919 27 H 0.099 0.901 28 H 0.058 0.942 29 H 0.349 0.651 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.037 0.963 33 H 0.027 0.973 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.045 -2.266 -16.504 16.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.097 3.903 3 C -0.193 4.193 4 C -0.122 4.122 5 H 0.093 0.907 6 C -0.057 4.057 7 N -0.307 5.307 8 C -0.059 4.059 9 C -0.168 4.168 10 H 0.082 0.918 11 C 0.010 3.990 12 N -0.347 5.347 13 C -0.345 4.345 14 H 0.074 0.926 15 C -0.229 4.229 16 N -0.598 5.598 17 Si 0.770 3.230 18 H -0.208 1.208 19 H -0.240 1.240 20 H -0.192 1.192 21 H 0.100 0.900 22 H 0.056 0.944 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.060 0.940 26 H 0.100 0.900 27 H 0.117 0.883 28 H 0.076 0.924 29 H 0.165 0.835 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.055 0.945 33 H 0.045 0.955 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.401 -1.975 -16.482 16.772 hybrid contribution -0.964 -1.153 1.439 2.081 sum -3.364 -3.128 -15.043 15.728 Atomic orbital electron populations 1.22069 0.96063 1.00496 1.01297 1.19871 0.92951 0.91830 0.85622 1.21937 1.00140 0.96076 1.01184 1.22184 1.01161 0.94672 0.94174 0.90690 1.22090 0.96397 0.93620 0.93590 1.63523 1.39656 1.06620 1.20936 1.21790 1.00954 0.96162 0.87044 1.22671 1.00420 0.98384 0.95323 0.91800 1.21114 0.95668 0.88936 0.93322 1.46263 1.64767 1.22237 1.01463 1.18430 1.43061 0.92239 0.80737 0.92598 1.25674 1.01005 1.01296 0.94885 1.70014 1.49442 1.36221 1.04078 0.85888 0.78866 0.82419 0.75799 1.20833 1.24036 1.19224 0.89992 0.94378 0.94653 0.94779 0.93992 0.89973 0.88271 0.92356 0.83496 0.90390 0.90707 0.94547 0.95542 0.93015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.83 7.85 71.98 0.57 -4.27 16 2 C 0.18 6.82 0.90 2.13 0.00 6.83 16 3 C -0.13 -4.72 8.48 71.98 0.61 -4.11 16 4 C -0.10 -3.14 2.13 -10.51 -0.02 -3.16 16 5 H 0.07 2.44 7.96 -2.39 -0.02 2.42 16 6 C 0.07 1.64 6.90 84.89 0.59 2.23 16 7 N -0.68 -15.00 7.57 -507.77 -3.84 -18.84 16 8 C 0.07 1.79 7.44 84.82 0.63 2.42 16 9 C -0.15 -4.94 2.87 -10.48 -0.03 -4.97 16 10 H 0.06 2.28 6.84 -2.39 -0.02 2.27 16 11 C 0.13 5.75 6.15 85.00 0.52 6.28 16 12 N -0.62 -29.61 2.68 -649.21 -1.74 -31.35 16 13 C -0.22 -12.42 10.03 84.03 0.84 -11.58 16 14 H 0.06 3.50 7.53 -2.91 -0.02 3.48 16 15 C -0.03 -2.01 5.40 84.86 0.46 -1.55 16 16 N -0.95 -60.84 13.97 21.65 0.30 -60.53 16 17 Si 0.94 48.01 24.88 68.60 1.71 49.71 16 18 H -0.28 -13.82 6.75 99.48 0.67 -13.15 16 19 H -0.31 -16.12 7.11 99.48 0.71 -15.41 16 20 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 21 H 0.08 2.15 7.75 -2.39 -0.02 2.14 16 22 H 0.04 1.35 6.86 -2.39 -0.02 1.34 16 23 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 24 H 0.03 1.32 7.59 -2.38 -0.02 1.30 16 25 H 0.04 1.52 8.12 -2.39 -0.02 1.50 16 26 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.06 1.26 7.23 -2.38 -0.02 1.25 16 29 H 0.35 6.05 8.94 -89.70 -0.80 5.25 16 30 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.03 1.25 2.94 -2.39 -0.01 1.24 16 34 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -66.75 257.13 0.83 -65.92 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 0.24 Total: 6.99 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: 4.17 Total: -11.89 kcal Atomic # 7 Polarization: -105.45 SS G_CDS: -5.29 Total: -110.73 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 1.71 Total: 49.71 kcal Total: -66.75 0.83 -65.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085289260.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.040 kcal (2) G-P(sol) polarization free energy of solvation -66.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds