Wall clock time and date at job start Mon Mar 30 2020 02:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00348 * 2 1 4 4 H 1.48498 * 109.47517 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46942 * 300.00400 * 3 2 1 6 6 H 1.48503 * 109.46790 * 60.00131 * 3 2 1 7 7 C 1.37883 * 119.99723 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99436 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00248 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47207 * 182.14713 * 9 7 2 11 11 C 1.46904 * 110.99859 * 74.38130 * 10 9 7 12 12 C 1.52995 * 117.50045 * 359.05055 * 11 10 9 13 13 C 1.52997 * 117.49571 * 290.42709 * 11 10 9 14 14 C 1.46906 * 110.99975 * 198.33173 * 10 9 7 15 15 H 1.08997 * 110.87548 * 189.88836 * 14 10 9 16 16 C 1.55144 * 110.98679 * 66.04527 * 14 10 9 17 17 C 1.54316 * 103.01863 * 206.25110 * 16 14 10 18 18 N 1.47453 * 107.23146 * 22.28685 * 17 16 14 19 19 C 1.47840 * 108.56467 * 0.98761 * 18 17 16 20 20 H 0.96999 * 119.99589 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47350 * 62.14315 * 9 7 2 22 22 H 1.09004 * 109.47024 * 302.14763 * 9 7 2 23 23 H 1.08999 * 115.54820 * 144.75638 * 11 10 9 24 24 H 1.09005 * 117.50052 * 359.97438 * 12 11 10 25 25 H 1.08993 * 117.50010 * 145.02184 * 12 11 10 26 26 H 1.09004 * 117.49329 * 214.98205 * 13 11 10 27 27 H 1.08997 * 117.49924 * 0.02562 * 13 11 10 28 28 H 1.08999 * 110.70106 * 87.87462 * 16 14 10 29 29 H 1.08997 * 110.71082 * 324.63635 * 16 14 10 30 30 H 1.08999 * 109.89334 * 262.88281 * 17 16 14 31 31 H 1.09000 * 109.88721 * 141.69034 * 17 16 14 32 32 H 1.00899 * 110.99747 * 123.25444 * 18 17 16 33 33 H 1.09007 * 110.37297 * 94.73409 * 19 18 17 34 34 H 1.08999 * 110.37443 * 217.06986 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2048 -3.6153 0.0498 11 6 2.7837 -3.7514 1.3931 12 6 2.3405 -2.7469 2.4585 13 6 3.7464 -2.6584 1.8614 14 6 1.5714 -4.8692 -0.3800 15 1 2.2205 -5.7213 -0.1781 16 6 1.1832 -4.8097 -1.8809 17 6 0.0069 -5.8040 -1.9754 18 7 -0.5641 -5.9351 -0.6222 19 6 0.1886 -5.0519 0.2938 20 1 -0.4849 0.8401 0.0004 21 1 0.6539 -2.5732 -0.9105 22 1 0.5955 -2.5410 0.8682 23 1 2.9857 -4.7725 1.7166 24 1 1.6196 -1.9847 2.1628 25 1 2.2507 -3.1070 3.4833 26 1 4.5816 -2.9604 2.4935 27 1 3.9498 -1.8381 1.1731 28 1 2.0140 -5.1350 -2.5070 29 1 0.8619 -3.8052 -2.1564 30 1 0.3671 -6.7728 -2.3213 31 1 -0.7487 -5.4204 -2.6611 32 1 -1.5465 -5.7049 -0.6205 33 1 -0.3151 -4.0903 0.3932 34 1 0.3014 -5.5247 1.2694 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086432399.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:11 Heat of formation + Delta-G solvation = 26.552076 kcal Electronic energy + Delta-G solvation = -14678.673882 eV Core-core repulsion = 12418.823819 eV Total energy + Delta-G solvation = -2259.850063 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.59328 -38.18498 -34.86639 -33.87959 -30.45612 -29.68588 -27.68659 -24.96156 -23.05502 -22.41421 -21.61583 -20.16372 -18.97659 -17.57750 -16.92226 -16.42671 -16.24922 -15.49417 -14.75287 -14.34514 -14.27587 -14.00158 -13.58790 -13.39492 -13.02571 -12.68266 -12.56361 -12.49502 -12.35567 -11.86510 -11.80305 -11.47924 -11.25594 -11.02569 -10.84757 -10.52512 -9.43893 -8.76675 -8.16948 -6.23058 1.37715 1.39903 1.51522 2.39701 2.92144 3.15763 3.27102 3.59798 3.78860 3.87927 4.20331 4.26055 4.27862 4.36993 4.49239 4.51840 4.68675 4.81442 4.91376 4.95304 4.98685 5.12388 5.21123 5.26256 5.38414 5.40521 5.65826 5.80491 5.81622 6.14784 6.37103 6.42565 6.69746 6.92667 7.44161 8.92964 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.032421 B = 0.010874 C = 0.009214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.438446 B = 2574.342224 C = 3037.978987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.004 3.996 3 Si 0.954 3.046 4 H -0.263 1.263 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.505 4.505 8 H 0.068 0.932 9 C 0.209 3.791 10 N -0.507 5.507 11 C 0.024 3.976 12 C -0.215 4.215 13 C -0.170 4.170 14 C 0.078 3.922 15 H 0.101 0.899 16 C -0.136 4.136 17 C 0.051 3.949 18 N -0.681 5.681 19 C 0.018 3.982 20 H 0.261 0.739 21 H 0.001 0.999 22 H -0.016 1.016 23 H 0.125 0.875 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.108 0.892 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.047 0.953 30 H 0.093 0.907 31 H 0.057 0.943 32 H 0.341 0.659 33 H 0.026 0.974 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.660 -9.315 0.325 9.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.193 4.193 3 Si 0.780 3.220 4 H -0.187 1.187 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.544 4.544 8 H 0.086 0.914 9 C 0.083 3.917 10 N -0.228 5.228 11 C -0.085 4.085 12 C -0.253 4.253 13 C -0.207 4.207 14 C -0.032 4.032 15 H 0.119 0.881 16 C -0.174 4.174 17 C -0.078 4.078 18 N -0.310 5.310 19 C -0.113 4.113 20 H 0.069 0.931 21 H 0.018 0.982 22 H 0.001 0.999 23 H 0.142 0.858 24 H 0.102 0.898 25 H 0.115 0.885 26 H 0.126 0.874 27 H 0.103 0.897 28 H 0.106 0.894 29 H 0.066 0.934 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.156 0.844 33 H 0.044 0.956 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.258 -9.702 0.134 10.236 hybrid contribution -1.035 2.034 0.263 2.297 sum 2.223 -7.669 0.397 7.994 Atomic orbital electron populations 1.70080 1.07478 1.27359 1.52723 1.25741 0.95527 1.02529 0.95524 0.85548 0.79321 0.79718 0.77406 1.18724 1.20896 1.20814 1.21645 0.93786 0.90793 1.48139 0.91358 1.19509 0.89980 0.88275 0.93898 1.62013 1.34259 1.03559 1.22932 1.22556 1.03190 0.94945 0.87831 1.23396 0.99685 1.04435 0.97820 1.23209 0.92727 1.01619 1.03175 1.22955 0.93047 0.92385 0.94807 0.88084 1.22843 0.99147 0.99171 0.96279 1.22638 0.95761 0.99296 0.90117 1.61899 1.07230 1.54459 1.07405 1.23444 0.95880 0.94513 0.97420 0.93062 0.98155 0.99860 0.85773 0.89781 0.88542 0.87364 0.89719 0.89413 0.93433 0.88916 0.92478 0.84370 0.95604 0.90623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.47 13.29 21.45 0.28 -55.19 16 2 C 0.00 0.24 5.46 84.66 0.46 0.70 16 3 Si 0.95 44.27 29.54 68.60 2.03 46.30 16 4 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 7 C -0.51 -27.60 6.69 25.60 0.17 -27.43 16 8 H 0.07 3.72 5.34 -2.91 -0.02 3.70 16 9 C 0.21 10.63 2.81 85.56 0.24 10.87 16 10 N -0.51 -21.25 4.66 -842.38 -3.92 -25.18 16 11 C 0.02 0.89 5.88 44.91 0.26 1.16 16 12 C -0.21 -8.49 9.14 30.59 0.28 -8.21 16 13 C -0.17 -6.31 9.82 30.59 0.30 -6.01 16 14 C 0.08 2.73 3.03 46.30 0.14 2.87 16 15 H 0.10 3.16 7.92 -2.39 -0.02 3.15 16 16 C -0.14 -4.51 6.43 31.78 0.20 -4.31 16 17 C 0.05 1.41 7.58 86.64 0.66 2.07 16 18 N -0.68 -20.25 7.39 -504.43 -3.73 -23.98 16 19 C 0.02 0.64 6.68 86.77 0.58 1.22 16 20 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 21 H 0.00 0.03 5.91 -2.39 -0.01 0.02 16 22 H -0.02 -0.89 5.28 -2.39 -0.01 -0.91 16 23 H 0.12 3.86 7.83 -2.39 -0.02 3.84 16 24 H 0.08 4.14 5.01 -2.38 -0.01 4.13 16 25 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 26 H 0.11 3.23 8.14 -2.38 -0.02 3.21 16 27 H 0.08 3.67 5.29 -2.39 -0.01 3.66 16 28 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 29 H 0.05 1.91 6.14 -2.39 -0.01 1.90 16 30 H 0.09 2.17 8.14 -2.39 -0.02 2.16 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.34 9.42 8.91 -89.69 -0.80 8.62 16 33 H 0.03 1.08 5.74 -2.38 -0.01 1.07 16 34 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -60.66 260.22 -1.74 -62.40 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.30 Total: 22.72 kcal Atomic # 6 Polarization: -30.36 SS G_CDS: 3.30 Total: -27.07 kcal Atomic # 7 Polarization: -96.98 SS G_CDS: -7.37 Total: -104.35 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -60.66 -1.74 -62.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086432399.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.951 kcal (2) G-P(sol) polarization free energy of solvation -60.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds