Wall clock time and date at job start Mon Mar 30 2020 03:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47037 * 2 1 4 4 C 1.50699 * 109.47389 * 240.00107 * 2 1 3 5 5 H 1.07999 * 120.00434 * 240.00055 * 4 2 1 6 6 C 1.37887 * 119.99970 * 59.99474 * 4 2 1 7 7 N 1.31519 * 119.99606 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00130 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46732 * 60.00300 * 8 6 4 10 10 H 1.48499 * 109.46989 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47202 * 300.00191 * 8 6 4 12 12 N 1.46903 * 109.47330 * 119.99831 * 2 1 3 13 13 C 1.48518 * 110.99920 * 182.18442 * 12 2 1 14 14 C 1.54281 * 104.71290 * 159.28191 * 13 12 2 15 15 H 1.09002 * 112.38346 * 98.55677 * 14 13 12 16 16 C 1.54294 * 108.81952 * 224.27075 * 14 13 12 17 17 N 1.48518 * 104.71419 * 135.72583 * 16 14 13 18 18 C 1.48515 * 104.20455 * 320.27163 * 17 16 14 19 19 C 1.54280 * 104.71755 * 39.73183 * 18 17 16 20 20 H 1.08999 * 112.37993 * 98.55273 * 19 18 17 21 21 C 1.48509 * 110.99959 * 297.58463 * 12 2 1 22 22 H 1.08991 * 109.46977 * 174.41213 * 1 2 3 23 23 H 1.09001 * 109.46756 * 294.41361 * 1 2 3 24 24 H 1.09001 * 109.47250 * 54.40947 * 1 2 3 25 25 H 0.97002 * 119.99576 * 179.97438 * 7 6 4 26 26 H 1.09000 * 110.38850 * 40.46905 * 13 12 2 27 27 H 1.09003 * 110.38564 * 278.08953 * 13 12 2 28 28 H 1.09005 * 110.38452 * 16.91755 * 16 14 13 29 29 H 1.08997 * 110.38728 * 254.53985 * 16 14 13 30 30 H 1.00901 * 110.99487 * 200.72584 * 17 16 14 31 31 H 1.09005 * 110.38556 * 158.54369 * 18 17 16 32 32 H 1.09004 * 110.38677 * 280.92122 * 18 17 16 33 33 H 1.08995 * 110.39243 * 81.91584 * 21 12 2 34 34 H 1.09002 * 110.38943 * 319.52716 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 1.8258 -2.5201 -4.0077 10 1 1.8269 -0.4198 -5.2205 11 1 3.8064 -1.1207 -4.0083 12 7 2.0197 -0.6925 1.1995 13 6 3.5034 -0.6666 1.2604 14 6 3.8391 -0.9203 2.7448 15 1 4.0999 -1.9606 2.9394 16 6 4.9430 0.0654 3.1810 17 7 4.4981 0.5679 4.5058 18 6 3.0314 0.7460 4.3543 19 6 2.5730 -0.4695 3.5220 20 1 2.1588 -1.2646 4.1420 21 6 1.5919 0.0139 2.4338 22 1 -0.3633 -1.0227 -0.1001 23 1 -0.3633 0.4248 0.9358 24 1 -0.3634 0.5981 -0.8357 25 1 0.7093 1.1618 -3.4844 26 1 3.8795 0.3073 0.9471 27 1 3.9229 -1.4555 0.6360 28 1 5.0207 0.8876 2.4695 29 1 5.8987 -0.4507 3.2719 30 1 4.9473 1.4431 4.7301 31 1 2.5457 0.7431 5.3302 32 1 2.8143 1.6731 3.8238 33 1 0.5700 -0.2617 2.6942 34 1 1.6731 1.0928 2.3014 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088389870.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:28 Heat of formation + Delta-G solvation = -11.241258 kcal Electronic energy + Delta-G solvation = -14546.077794 eV Core-core repulsion = 12284.588889 eV Total energy + Delta-G solvation = -2261.488905 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.97995 -37.50566 -34.93918 -32.38840 -31.52649 -29.16740 -27.67759 -26.22197 -23.81856 -22.45685 -21.24643 -20.21617 -18.35648 -17.56148 -17.11706 -16.49381 -15.69397 -15.53357 -15.18315 -14.44693 -14.09453 -13.61591 -13.20464 -13.16338 -12.96540 -12.92166 -12.73679 -12.56924 -12.26622 -12.07549 -11.83093 -11.63812 -11.54424 -11.47848 -10.94206 -10.56598 -9.64825 -9.08900 -8.15131 -6.27162 1.39965 1.42080 1.49814 2.39789 3.12686 3.26818 3.31817 3.59736 3.88232 3.99199 4.14558 4.39100 4.43789 4.45940 4.68394 4.76230 4.79183 4.82314 4.85851 4.88087 4.96572 5.07594 5.18615 5.24261 5.35951 5.41769 5.64992 5.68282 5.70778 6.16840 6.29408 6.38300 6.59390 6.86006 7.42189 8.91337 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.048642 B = 0.008571 C = 0.007798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.497618 B = 3265.867694 C = 3589.610439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.209 3.791 3 H -0.039 1.039 4 C -0.522 4.522 5 H 0.055 0.945 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.961 3.039 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.271 1.271 12 N -0.517 5.517 13 C 0.055 3.945 14 C -0.090 4.090 15 H 0.099 0.901 16 C 0.044 3.956 17 N -0.664 5.664 18 C 0.043 3.957 19 C -0.086 4.086 20 H 0.102 0.898 21 C 0.037 3.963 22 H 0.030 0.970 23 H 0.030 0.970 24 H 0.057 0.943 25 H 0.262 0.738 26 H 0.018 0.982 27 H 0.063 0.937 28 H 0.032 0.968 29 H 0.095 0.905 30 H 0.345 0.655 31 H 0.098 0.902 32 H 0.034 0.966 33 H 0.076 0.924 34 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.141 -0.490 11.403 12.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.101 3.899 3 H -0.022 1.022 4 C -0.560 4.560 5 H 0.073 0.927 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.786 3.214 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.196 1.196 12 N -0.241 5.241 13 C -0.074 4.074 14 C -0.109 4.109 15 H 0.117 0.883 16 C -0.086 4.086 17 N -0.293 5.293 18 C -0.087 4.087 19 C -0.106 4.106 20 H 0.121 0.879 21 C -0.092 4.092 22 H 0.049 0.951 23 H 0.049 0.951 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.037 0.963 27 H 0.082 0.918 28 H 0.051 0.949 29 H 0.113 0.887 30 H 0.161 0.839 31 H 0.116 0.884 32 H 0.052 0.948 33 H 0.095 0.905 34 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 4.840 -1.546 11.598 12.662 hybrid contribution 0.245 1.555 -1.865 2.440 sum 5.086 0.009 9.733 10.981 Atomic orbital electron populations 1.21597 0.97163 0.99632 0.99157 1.19198 0.92857 0.89983 0.87849 1.02158 1.21343 1.31340 1.12316 0.91032 0.92655 1.25750 0.95298 0.95755 1.02002 1.70027 1.37719 1.24143 1.24204 0.85561 0.78730 0.78721 0.78339 1.19615 1.20760 1.19633 1.65388 1.07406 1.49233 1.02045 1.22957 0.89435 0.98853 0.96122 1.22681 0.94914 1.00419 0.92902 0.88286 1.23015 0.98761 0.96884 0.89940 1.63742 1.04239 1.33109 1.28204 1.23055 0.89539 0.95680 1.00391 1.22643 0.94611 0.97989 0.95318 0.87939 1.23217 0.99778 0.95310 0.90865 0.95104 0.95059 0.92429 0.92860 0.96325 0.91826 0.94947 0.88700 0.83868 0.88359 0.94764 0.90523 0.95828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.94 8.91 71.98 0.64 -5.29 16 2 C 0.21 10.99 1.82 44.17 0.08 11.07 16 3 H -0.04 -2.30 7.98 -2.38 -0.02 -2.31 16 4 C -0.52 -29.55 8.12 25.60 0.21 -29.34 16 5 H 0.06 3.12 7.09 -2.91 -0.02 3.10 16 6 C 0.01 0.60 5.30 84.66 0.45 1.05 16 7 N -0.92 -53.98 11.38 21.45 0.24 -53.73 16 8 Si 0.96 44.29 29.54 68.60 2.03 46.32 16 9 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 12 N -0.52 -22.86 5.19 -861.35 -4.47 -27.33 16 13 C 0.05 2.18 5.29 86.42 0.46 2.63 16 14 C -0.09 -2.71 4.12 -9.15 -0.04 -2.75 16 15 H 0.10 2.80 8.14 -2.39 -0.02 2.79 16 16 C 0.04 1.12 7.01 86.43 0.61 1.73 16 17 N -0.66 -15.36 7.62 -501.39 -3.82 -19.18 16 18 C 0.04 1.05 7.00 86.42 0.61 1.65 16 19 C -0.09 -2.49 4.12 -9.15 -0.04 -2.53 16 20 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 21 C 0.04 1.33 4.99 86.43 0.43 1.76 16 22 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.03 1.38 6.73 -2.39 -0.02 1.36 16 24 H 0.06 3.18 6.24 -2.39 -0.01 3.16 16 25 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 26 H 0.02 0.79 6.95 -2.39 -0.02 0.78 16 27 H 0.06 2.63 7.51 -2.39 -0.02 2.61 16 28 H 0.03 0.91 7.15 -2.38 -0.02 0.89 16 29 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.35 6.60 8.92 -89.69 -0.80 5.80 16 31 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 32 H 0.03 0.89 7.15 -2.38 -0.02 0.88 16 33 H 0.08 2.67 7.53 -2.39 -0.02 2.65 16 34 H 0.02 0.90 6.95 -2.39 -0.02 0.89 16 Total: -1.00 -61.74 260.97 -2.34 -64.08 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 0.28 Total: 9.87 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: 3.40 Total: -20.02 kcal Atomic # 7 Polarization: -92.19 SS G_CDS: -8.05 Total: -100.24 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -61.74 -2.34 -64.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088389870.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.836 kcal (2) G-P(sol) polarization free energy of solvation -61.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds