Wall clock time and date at job start Mon Mar 30 2020 03:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46559 * 2 1 4 4 C 1.50695 * 109.46872 * 120.00054 * 2 1 3 5 5 H 1.07995 * 119.99809 * 114.36190 * 4 2 1 6 6 C 1.37874 * 120.00249 * 294.35390 * 4 2 1 7 7 N 1.31514 * 120.00163 * 156.49488 * 6 4 2 8 8 Si 1.86801 * 120.00043 * 336.50655 * 6 4 2 9 9 H 1.48504 * 109.47262 * 179.97438 * 8 6 4 10 10 H 1.48507 * 109.46774 * 299.99248 * 8 6 4 11 11 H 1.48501 * 109.47383 * 59.99336 * 8 6 4 12 12 N 1.46897 * 109.47000 * 240.00321 * 2 1 3 13 13 C 1.49711 * 110.99732 * 179.68287 * 12 2 1 14 14 C 1.50126 * 104.73378 * 245.78869 * 13 12 2 15 15 H 1.09009 * 110.05262 * 80.32200 * 14 13 12 16 16 C 1.50747 * 126.53722 * 216.17858 * 14 13 12 17 17 N 1.50179 * 102.14395 * 154.91171 * 16 14 13 18 18 C 1.49702 * 107.64888 * 334.70751 * 17 16 14 19 19 C 1.50141 * 104.74252 * 352.55280 * 18 17 16 20 20 H 1.09004 * 109.78206 * 279.74602 * 19 18 17 21 21 C 1.50177 * 111.00572 * 59.99853 * 12 2 1 22 22 H 1.09001 * 109.47164 * 172.85869 * 1 2 3 23 23 H 1.08994 * 109.47265 * 292.85842 * 1 2 3 24 24 H 1.09002 * 109.47128 * 52.86593 * 1 2 3 25 25 H 0.97003 * 119.99685 * 354.94835 * 7 6 4 26 26 H 1.08997 * 110.38337 * 4.60232 * 13 12 2 27 27 H 1.09004 * 110.38515 * 126.97685 * 13 12 2 28 28 H 1.08999 * 110.86753 * 273.07488 * 16 14 13 29 29 H 1.08999 * 110.86223 * 36.75018 * 16 14 13 30 30 H 1.00902 * 110.99736 * 213.04606 * 17 16 14 31 31 H 1.09000 * 110.38618 * 233.73092 * 18 17 16 32 32 H 1.09006 * 110.38395 * 111.36814 * 18 17 16 33 33 H 1.08995 * 110.87022 * 265.12430 * 21 12 2 34 34 H 1.09004 * 110.86681 * 28.79085 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5760 -1.6385 1.1339 6 6 1.7978 -0.1755 2.4794 7 7 1.8004 -0.9540 3.5393 8 14 1.4763 1.6552 2.6660 9 1 1.2547 1.9753 4.0991 10 1 2.6477 2.4172 2.1635 11 1 0.2704 2.0283 1.8837 12 7 2.0196 -0.6924 -1.1995 13 6 3.5162 -0.7057 -1.2379 14 6 3.8751 0.1379 -2.4267 15 1 3.8197 1.1948 -2.1655 16 6 5.0229 -0.0919 -3.3766 17 7 4.5410 0.5897 -4.6251 18 6 3.0445 0.6020 -4.5867 19 6 2.6858 -0.2424 -3.3983 20 1 2.7443 -1.2978 -3.6644 21 6 1.5381 -0.0115 -2.4484 22 1 -0.3633 -1.0197 -0.1278 23 1 -0.3633 0.3992 0.9469 24 1 -0.3633 0.6204 -0.8193 25 1 1.8940 -1.9139 3.4357 26 1 3.9233 -0.2692 -0.3258 27 1 3.8836 -1.7234 -1.3697 28 1 5.9340 0.3771 -3.0052 29 1 5.1759 -1.1570 -3.5500 30 1 4.8777 0.1147 -5.4492 31 1 2.6377 0.1659 -5.4991 32 1 2.6765 1.6195 -4.4545 33 1 0.6267 -0.4801 -2.8194 34 1 1.3856 1.0539 -2.2756 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088389871.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:32 Heat of formation + Delta-G solvation = 29.935090 kcal Electronic energy + Delta-G solvation = -14592.312829 eV Core-core repulsion = 12332.609465 eV Total energy + Delta-G solvation = -2259.703364 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.13364 -36.17602 -33.11107 -31.01570 -30.13900 -27.68147 -26.34196 -24.35271 -22.69469 -20.20666 -19.94873 -19.16666 -17.32966 -16.21431 -15.55091 -14.91364 -14.21491 -13.74119 -13.60397 -12.93685 -12.74685 -12.42733 -12.09717 -12.04186 -11.63375 -11.40773 -11.11883 -10.86419 -10.47912 -10.42332 -10.24425 -10.14581 -9.86717 -9.72184 -8.91083 -8.56166 -8.23028 -7.41764 -6.46275 -4.02361 3.39100 3.42956 3.60477 4.13084 4.20685 4.50196 4.64767 4.87991 5.21548 5.26161 5.40750 5.59164 5.61470 5.79629 5.83874 5.91925 5.93950 6.20427 6.23779 6.35102 6.43235 6.51750 6.60945 6.64154 6.68097 6.75319 6.93104 7.24824 7.27410 7.66970 7.97244 8.29719 8.43327 9.00126 9.62013 10.91811 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.047009 B = 0.008979 C = 0.008697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.486021 B = 3117.804358 C = 3218.855820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.184 3.816 3 H -0.011 1.011 4 C -0.596 4.596 5 H 0.063 0.937 6 C 0.037 3.963 7 N -0.898 5.898 8 Si 1.034 2.966 9 H -0.284 1.284 10 H -0.285 1.285 11 H -0.278 1.278 12 N -0.509 5.509 13 C 0.071 3.929 14 C -0.139 4.139 15 H 0.076 0.924 16 C 0.064 3.936 17 N -0.684 5.684 18 C 0.064 3.936 19 C -0.144 4.144 20 H 0.076 0.924 21 C 0.058 3.942 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.019 0.981 25 H 0.270 0.730 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.048 0.952 30 H 0.333 0.667 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.521 2.801 -13.949 14.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.076 3.924 3 H 0.007 0.993 4 C -0.634 4.634 5 H 0.082 0.918 6 C -0.169 4.169 7 N -0.532 5.532 8 Si 0.862 3.138 9 H -0.210 1.210 10 H -0.212 1.212 11 H -0.205 1.205 12 N -0.234 5.234 13 C -0.057 4.057 14 C -0.159 4.159 15 H 0.095 0.905 16 C -0.065 4.065 17 N -0.312 5.312 18 C -0.066 4.066 19 C -0.164 4.164 20 H 0.095 0.905 21 C -0.070 4.070 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.038 0.962 25 H 0.080 0.920 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.099 0.901 29 H 0.066 0.934 30 H 0.148 0.852 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.149 4.145 -12.527 13.369 hybrid contribution 0.300 -1.338 -1.357 1.929 sum 2.449 2.807 -13.884 14.375 Atomic orbital electron populations 1.22124 0.98175 1.00274 0.99127 1.19751 0.91916 0.91911 0.88842 0.99325 1.21881 1.40451 1.10719 0.90317 0.91842 1.25615 0.93600 1.05563 0.92131 1.70838 1.44044 1.06349 1.31924 0.84178 0.77127 0.76389 0.76105 1.21000 1.21178 1.20464 1.65290 1.06152 1.50647 1.01291 1.21875 0.89417 0.98421 0.96038 1.22681 0.95206 1.01750 0.96294 0.90510 1.22057 0.97613 0.96901 0.89930 1.63514 1.07722 1.55512 1.04434 1.21820 0.88027 1.00092 0.96617 1.22622 0.97822 1.00519 0.95399 0.90544 1.22235 0.96365 0.97424 0.90961 0.93015 0.92875 0.96178 0.92024 0.90457 0.91873 0.90129 0.93406 0.85237 0.92467 0.90656 0.90944 0.93877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.68 37.16 0.32 -2.83 16 2 C 0.18 4.45 1.35 -68.87 -0.09 4.36 16 3 H -0.01 -0.26 6.69 -51.92 -0.35 -0.61 16 4 C -0.60 -16.72 7.72 -34.44 -0.27 -16.99 16 5 H 0.06 1.94 7.83 -52.49 -0.41 1.53 16 6 C 0.04 1.07 5.18 -17.82 -0.09 0.98 16 7 N -0.90 -27.45 13.70 55.43 0.76 -26.69 16 8 Si 1.03 25.24 26.45 -169.99 -4.50 20.75 16 9 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.37 6.18 56.52 0.35 -6.02 16 12 N -0.51 -10.88 5.14 -225.81 -1.16 -12.05 16 13 C 0.07 1.38 6.08 -3.68 -0.02 1.36 16 14 C -0.14 -2.25 2.90 -90.31 -0.26 -2.52 16 15 H 0.08 1.36 8.14 -51.92 -0.42 0.94 16 16 C 0.06 0.85 7.44 -3.11 -0.02 0.83 16 17 N -0.68 -8.50 7.57 -111.80 -0.85 -9.35 16 18 C 0.06 0.80 7.44 -3.68 -0.03 0.77 16 19 C -0.14 -2.15 2.91 -90.30 -0.26 -2.41 16 20 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 21 C 0.06 1.02 5.35 -3.11 -0.02 1.01 16 22 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 23 H 0.05 1.25 5.52 -51.93 -0.29 0.96 16 24 H 0.02 0.39 7.38 -51.93 -0.38 0.00 16 25 H 0.27 8.24 8.73 -40.82 -0.36 7.88 16 26 H 0.08 1.70 6.94 -51.93 -0.36 1.34 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.33 3.38 8.94 -39.29 -0.35 3.03 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.04 0.77 7.77 -51.93 -0.40 0.36 16 LS Contribution 261.38 15.07 3.94 3.94 Total: -1.00 -29.61 261.38 -8.10 -37.71 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -5.55 Total: 1.13 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -0.74 Total: -15.45 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: -1.25 Total: -48.08 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: -4.50 Total: 20.75 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.61 -8.10 -37.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088389871.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.643 kcal (2) G-P(sol) polarization free energy of solvation -29.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds