Wall clock time and date at job start Mon Mar 30 2020 03:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46559 * 2 1 4 4 C 1.50695 * 109.46872 * 120.00054 * 2 1 3 5 5 H 1.07995 * 119.99809 * 114.36190 * 4 2 1 6 6 C 1.37874 * 120.00249 * 294.35390 * 4 2 1 7 7 N 1.31514 * 120.00163 * 156.49488 * 6 4 2 8 8 Si 1.86801 * 120.00043 * 336.50655 * 6 4 2 9 9 H 1.48504 * 109.47262 * 179.97438 * 8 6 4 10 10 H 1.48507 * 109.46774 * 299.99248 * 8 6 4 11 11 H 1.48501 * 109.47383 * 59.99336 * 8 6 4 12 12 N 1.46897 * 109.47000 * 240.00321 * 2 1 3 13 13 C 1.49711 * 110.99732 * 179.68287 * 12 2 1 14 14 C 1.50126 * 104.73378 * 245.78869 * 13 12 2 15 15 H 1.09009 * 110.05262 * 80.32200 * 14 13 12 16 16 C 1.50747 * 126.53722 * 216.17858 * 14 13 12 17 17 N 1.50179 * 102.14395 * 154.91171 * 16 14 13 18 18 C 1.49702 * 107.64888 * 334.70751 * 17 16 14 19 19 C 1.50141 * 104.74252 * 352.55280 * 18 17 16 20 20 H 1.09004 * 109.78206 * 279.74602 * 19 18 17 21 21 C 1.50177 * 111.00572 * 59.99853 * 12 2 1 22 22 H 1.09001 * 109.47164 * 172.85869 * 1 2 3 23 23 H 1.08994 * 109.47265 * 292.85842 * 1 2 3 24 24 H 1.09002 * 109.47128 * 52.86593 * 1 2 3 25 25 H 0.97003 * 119.99685 * 354.94835 * 7 6 4 26 26 H 1.08997 * 110.38337 * 4.60232 * 13 12 2 27 27 H 1.09004 * 110.38515 * 126.97685 * 13 12 2 28 28 H 1.08999 * 110.86753 * 273.07488 * 16 14 13 29 29 H 1.08999 * 110.86223 * 36.75018 * 16 14 13 30 30 H 1.00902 * 110.99736 * 213.04606 * 17 16 14 31 31 H 1.09000 * 110.38618 * 233.73092 * 18 17 16 32 32 H 1.09006 * 110.38395 * 111.36814 * 18 17 16 33 33 H 1.08995 * 110.87022 * 265.12430 * 21 12 2 34 34 H 1.09004 * 110.86681 * 28.79085 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5760 -1.6385 1.1339 6 6 1.7978 -0.1755 2.4794 7 7 1.8004 -0.9540 3.5393 8 14 1.4763 1.6552 2.6660 9 1 1.2547 1.9753 4.0991 10 1 2.6477 2.4172 2.1635 11 1 0.2704 2.0283 1.8837 12 7 2.0196 -0.6924 -1.1995 13 6 3.5162 -0.7057 -1.2379 14 6 3.8751 0.1379 -2.4267 15 1 3.8197 1.1948 -2.1655 16 6 5.0229 -0.0919 -3.3766 17 7 4.5410 0.5897 -4.6251 18 6 3.0445 0.6020 -4.5867 19 6 2.6858 -0.2424 -3.3983 20 1 2.7443 -1.2978 -3.6644 21 6 1.5381 -0.0115 -2.4484 22 1 -0.3633 -1.0197 -0.1278 23 1 -0.3633 0.3992 0.9469 24 1 -0.3633 0.6204 -0.8193 25 1 1.8940 -1.9139 3.4357 26 1 3.9233 -0.2692 -0.3258 27 1 3.8836 -1.7234 -1.3697 28 1 5.9340 0.3771 -3.0052 29 1 5.1759 -1.1570 -3.5500 30 1 4.8777 0.1147 -5.4492 31 1 2.6377 0.1659 -5.4991 32 1 2.6765 1.6195 -4.4545 33 1 0.6267 -0.4801 -2.8194 34 1 1.3856 1.0539 -2.2756 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088389871.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:31 Heat of formation + Delta-G solvation = 6.515409 kcal Electronic energy + Delta-G solvation = -14593.328382 eV Core-core repulsion = 12332.609465 eV Total energy + Delta-G solvation = -2260.718918 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.45525 -37.70094 -35.03678 -32.83206 -31.41063 -29.16662 -27.78528 -26.25663 -24.17175 -21.58302 -21.23406 -20.93228 -19.43857 -17.42885 -16.86782 -16.52283 -15.69683 -15.45173 -15.18117 -14.46265 -14.29185 -13.88723 -13.76738 -13.39760 -13.26615 -12.84924 -12.74287 -12.39997 -12.29825 -12.01309 -11.87894 -11.76859 -11.62115 -11.10101 -11.02150 -10.43990 -9.54298 -9.10819 -8.75892 -6.32300 1.42730 1.47939 1.68338 2.46308 2.95410 2.98202 3.06171 3.19796 3.68780 4.03896 4.29588 4.37130 4.40872 4.43817 4.53603 4.61292 4.69589 4.76381 4.78659 4.79904 4.92879 4.98384 5.05554 5.09314 5.17660 5.29515 5.44586 5.59956 5.83740 6.04596 6.12466 6.41501 6.43484 6.71239 7.40790 8.60517 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.047009 B = 0.008979 C = 0.008697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.486021 B = 3117.804358 C = 3218.855820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.187 3.813 3 H -0.014 1.014 4 C -0.595 4.595 5 H 0.022 0.978 6 C -0.012 4.012 7 N -0.930 5.930 8 Si 1.074 2.926 9 H -0.285 1.285 10 H -0.272 1.272 11 H -0.248 1.248 12 N -0.531 5.531 13 C 0.073 3.927 14 C -0.137 4.137 15 H 0.062 0.938 16 C 0.070 3.930 17 N -0.685 5.685 18 C 0.069 3.931 19 C -0.129 4.129 20 H 0.077 0.923 21 C 0.058 3.942 22 H 0.043 0.957 23 H 0.042 0.958 24 H 0.054 0.946 25 H 0.254 0.746 26 H 0.042 0.958 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.350 0.650 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.154 4.296 -16.572 17.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.078 3.922 3 H 0.004 0.996 4 C -0.633 4.633 5 H 0.040 0.960 6 C -0.211 4.211 7 N -0.565 5.565 8 Si 0.896 3.104 9 H -0.211 1.211 10 H -0.197 1.197 11 H -0.173 1.173 12 N -0.255 5.255 13 C -0.056 4.056 14 C -0.157 4.157 15 H 0.080 0.920 16 C -0.059 4.059 17 N -0.315 5.315 18 C -0.060 4.060 19 C -0.149 4.149 20 H 0.095 0.905 21 C -0.069 4.069 22 H 0.062 0.938 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.103 0.897 29 H 0.077 0.923 30 H 0.166 0.834 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.788 5.626 -15.195 16.302 hybrid contribution 0.467 -1.915 -0.579 2.054 sum 2.255 3.711 -15.774 16.360 Atomic orbital electron populations 1.22004 0.96661 1.00503 0.99960 1.19579 0.92928 0.91172 0.88512 0.99612 1.22022 1.39512 1.09242 0.92547 0.95972 1.26981 0.93045 1.09196 0.91919 1.70963 1.47018 1.05608 1.32935 0.83663 0.78754 0.71454 0.76558 1.21090 1.19715 1.17269 1.65191 1.07171 1.51261 1.01921 1.21725 0.88736 0.98816 0.96274 1.22513 0.97825 0.99855 0.95546 0.91986 1.22011 0.96541 0.97836 0.89484 1.63456 1.07633 1.55753 1.04627 1.21827 0.88055 0.99642 0.96428 1.22551 0.95552 1.01142 0.95660 0.90479 1.22286 0.97759 0.97206 0.89690 0.93811 0.93884 0.92719 0.93704 0.93896 0.91988 0.89680 0.92263 0.83361 0.89671 0.90799 0.89645 0.93745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.83 8.68 71.98 0.62 -5.21 16 2 C 0.19 8.98 1.35 44.17 0.06 9.04 16 3 H -0.01 -0.65 6.69 -2.38 -0.02 -0.67 16 4 C -0.60 -34.41 7.72 25.60 0.20 -34.22 16 5 H 0.02 1.42 7.83 -2.91 -0.02 1.40 16 6 C -0.01 -0.69 5.18 84.65 0.44 -0.25 16 7 N -0.93 -58.74 13.70 21.45 0.29 -58.44 16 8 Si 1.07 50.57 26.45 68.60 1.81 52.39 16 9 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.25 -10.46 6.18 99.48 0.62 -9.85 16 12 N -0.53 -22.44 5.14 -868.33 -4.46 -26.90 16 13 C 0.07 2.87 6.08 84.83 0.52 3.39 16 14 C -0.14 -4.25 2.90 -10.59 -0.03 -4.28 16 15 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 16 C 0.07 1.69 7.44 84.93 0.63 2.33 16 17 N -0.68 -14.54 7.57 -507.62 -3.84 -18.39 16 18 C 0.07 1.48 7.44 84.83 0.63 2.11 16 19 C -0.13 -3.50 2.91 -10.59 -0.03 -3.53 16 20 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 21 C 0.06 1.90 5.35 84.93 0.45 2.35 16 22 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 23 H 0.04 1.94 5.52 -2.39 -0.01 1.93 16 24 H 0.05 1.99 7.38 -2.39 -0.02 1.97 16 25 H 0.25 16.33 8.73 -92.71 -0.81 15.52 16 26 H 0.04 1.96 6.94 -2.39 -0.02 1.94 16 27 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 28 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.35 5.65 8.94 -89.69 -0.80 4.85 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.04 1.45 7.77 -2.39 -0.02 1.43 16 Total: -1.00 -65.33 261.38 -2.57 -67.89 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 0.14 Total: 11.72 kcal Atomic # 6 Polarization: -31.77 SS G_CDS: 3.49 Total: -28.27 kcal Atomic # 7 Polarization: -95.72 SS G_CDS: -8.01 Total: -103.73 kcal Atomic # 14 Polarization: 50.57 SS G_CDS: 1.81 Total: 52.39 kcal Total: -65.33 -2.57 -67.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088389871.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.410 kcal (2) G-P(sol) polarization free energy of solvation -65.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds