Wall clock time and date at job start Mon Mar 30 2020 02:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00110 * 2 1 4 4 H 1.48499 * 109.47230 * 89.99864 * 3 2 1 5 5 H 1.48509 * 109.46852 * 330.00197 * 3 2 1 6 6 H 1.48494 * 109.47286 * 210.00375 * 3 2 1 7 7 C 1.37876 * 120.00211 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00218 * 186.67880 * 7 2 1 9 9 C 1.50701 * 120.00061 * 6.68141 * 7 2 1 10 10 C 1.53002 * 115.54568 * 278.23341 * 9 7 2 11 11 N 1.46903 * 109.47166 * 305.33357 * 10 9 7 12 12 C 1.47838 * 111.00344 * 284.95599 * 11 10 9 13 13 C 1.54916 * 104.79560 * 213.63687 * 12 11 10 14 14 C 1.55134 * 101.65262 * 37.06640 * 13 12 11 15 15 H 1.09005 * 110.70485 * 82.73022 * 14 13 12 16 16 N 1.46898 * 110.85564 * 205.89676 * 14 13 12 17 17 C 1.47443 * 110.99984 * 164.10684 * 11 10 9 18 18 C 1.52995 * 117.50186 * 132.52556 * 9 7 2 19 19 C 1.52994 * 117.50188 * 63.90068 * 9 7 2 20 20 H 0.96999 * 119.99490 * 174.96124 * 1 2 3 21 21 H 1.08992 * 109.47506 * 65.33762 * 10 9 7 22 22 H 1.09000 * 109.46770 * 185.34051 * 10 9 7 23 23 H 1.09003 * 110.37095 * 332.46175 * 12 11 10 24 24 H 1.08995 * 110.37965 * 94.80646 * 12 11 10 25 25 H 1.08999 * 110.98211 * 278.97308 * 13 12 11 26 26 H 1.09000 * 111.01995 * 155.17596 * 13 12 11 27 27 H 1.00907 * 110.99806 * 293.68345 * 16 14 13 28 28 H 1.00899 * 111.00309 * 57.63543 * 16 14 13 29 29 H 1.09001 * 109.89190 * 242.66799 * 17 11 10 30 30 H 1.09000 * 109.88951 * 3.69409 * 17 11 10 31 31 H 1.09004 * 117.50025 * 0.02562 * 18 9 7 32 32 H 1.09000 * 117.50030 * 145.01954 * 18 9 7 33 33 H 1.09001 * 117.49807 * 214.98211 * 19 9 7 34 34 H 1.09006 * 117.49768 * 0.02562 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4465 2.6527 -0.7000 6 1 3.5466 1.4402 -0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0791 -1.1972 0.1082 9 6 1.2587 -2.4947 -0.1530 10 6 0.6240 -3.0450 1.1258 11 7 1.6501 -3.1631 2.1703 12 6 2.5317 -4.3229 1.9183 13 6 2.9073 -4.8477 3.3266 14 6 1.5830 -4.6312 4.1051 15 1 0.8928 -5.4562 3.9284 16 7 1.8414 -4.4714 5.5424 17 6 1.0343 -3.3217 3.5005 18 6 1.8016 -3.5060 -1.1646 19 6 0.5166 -2.7335 -1.4694 20 1 -0.4849 -0.8368 -0.0738 21 1 -0.1609 -2.3678 1.4624 22 1 0.1952 -4.0269 0.9250 23 1 1.9982 -5.0902 1.3573 24 1 3.4257 -4.0100 1.3791 25 1 3.7157 -4.2587 3.7598 26 1 3.1719 -5.9045 3.2923 27 1 2.2005 -5.3254 5.9424 28 1 2.4692 -3.7002 5.7133 29 1 1.3032 -2.4784 4.1366 30 1 -0.0497 -3.3813 3.4026 31 1 2.6985 -3.2308 -1.7196 32 1 1.7067 -4.5637 -0.9192 33 1 -0.4236 -3.2830 -1.4245 34 1 0.5682 -1.9499 -2.2255 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130830696.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:35 Heat of formation + Delta-G solvation = 4.726494 kcal Electronic energy + Delta-G solvation = -14490.328882 eV Core-core repulsion = 12229.532391 eV Total energy + Delta-G solvation = -2260.796491 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.33967 -38.30262 -34.66685 -33.84753 -31.06477 -28.76472 -27.00423 -26.06724 -23.08704 -22.14298 -21.55971 -21.16032 -18.57897 -17.43983 -16.70804 -16.02170 -15.64646 -15.55543 -14.97737 -14.85655 -14.38490 -14.10393 -13.63612 -13.42865 -12.94063 -12.72746 -12.59363 -12.46901 -12.19727 -12.09806 -11.92309 -11.78590 -11.28186 -10.41810 -10.37085 -10.15756 -9.63178 -9.00764 -8.42348 -6.10331 1.55237 1.63694 1.80235 2.63875 2.99182 3.33824 3.38928 3.52615 3.75523 3.83591 4.07831 4.21908 4.28359 4.33040 4.50089 4.53651 4.56293 4.67044 4.81028 4.85002 4.88544 4.96741 5.03149 5.11432 5.20112 5.43407 5.52937 6.12167 6.19340 6.30687 6.33823 6.44108 6.60472 6.85568 7.66067 8.98486 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.031625 B = 0.010188 C = 0.008813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.169880 B = 2747.638952 C = 3176.390240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.025 4.025 3 Si 1.109 2.891 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.543 4.543 8 H 0.034 0.966 9 C 0.007 3.993 10 C 0.109 3.891 11 N -0.524 5.524 12 C 0.053 3.947 13 C -0.151 4.151 14 C 0.085 3.915 15 H 0.089 0.911 16 N -0.839 5.839 17 C 0.047 3.953 18 C -0.172 4.172 19 C -0.189 4.189 20 H 0.262 0.738 21 H 0.036 0.964 22 H 0.018 0.982 23 H 0.041 0.959 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.094 0.906 27 H 0.354 0.646 28 H 0.347 0.653 29 H 0.063 0.937 30 H 0.040 0.960 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.732 -10.340 6.606 13.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.223 4.223 3 Si 0.933 3.067 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.581 4.581 8 H 0.052 0.948 9 C 0.006 3.994 10 C -0.019 4.019 11 N -0.248 5.248 12 C -0.075 4.075 13 C -0.191 4.191 14 C -0.029 4.029 15 H 0.107 0.893 16 N -0.370 5.370 17 C -0.081 4.081 18 C -0.210 4.210 19 C -0.227 4.227 20 H 0.072 0.928 21 H 0.055 0.945 22 H 0.036 0.964 23 H 0.059 0.941 24 H 0.079 0.921 25 H 0.092 0.908 26 H 0.113 0.887 27 H 0.168 0.832 28 H 0.160 0.840 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.036 -8.102 6.742 11.286 hybrid contribution 0.391 -2.292 -0.656 2.416 sum 4.426 -10.394 6.085 12.832 Atomic orbital electron populations 1.70808 1.07534 1.30720 1.48746 1.26846 0.96714 1.05294 0.93445 0.83022 0.74199 0.72321 0.77141 1.20738 1.21279 1.20151 1.21292 0.93345 0.91039 1.52466 0.94777 1.19157 0.98558 0.95119 0.86520 1.21650 0.92106 0.95667 0.92482 1.63254 1.19484 1.41053 1.01000 1.22905 0.96798 0.90423 0.97384 1.23481 0.98428 1.02059 0.95088 1.22523 0.95761 0.96575 0.88002 0.89258 1.58737 1.55604 1.11024 1.11607 1.22810 0.97143 0.97773 0.90405 1.22837 0.96347 0.96177 1.05593 1.22729 0.94999 1.02599 1.02380 0.92759 0.94527 0.96428 0.94054 0.92095 0.90792 0.88712 0.83151 0.83971 0.91826 0.94114 0.90685 0.89214 0.90212 0.92085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.32 13.60 21.45 0.29 -57.03 16 2 C -0.02 -1.42 5.41 84.66 0.46 -0.96 16 3 Si 1.11 52.15 29.91 68.60 2.05 54.20 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 5 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 6 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.54 -30.65 8.50 25.60 0.22 -30.44 16 8 H 0.03 1.98 7.82 -2.91 -0.02 1.96 16 9 C 0.01 0.36 0.86 -52.93 -0.05 0.31 16 10 C 0.11 4.96 4.50 86.30 0.39 5.35 16 11 N -0.52 -21.31 4.81 -885.54 -4.26 -25.57 16 12 C 0.05 1.76 5.96 86.78 0.52 2.28 16 13 C -0.15 -3.70 6.75 31.98 0.22 -3.48 16 14 C 0.08 2.16 4.09 46.10 0.19 2.35 16 15 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 16 N -0.84 -17.81 9.34 -163.80 -1.53 -19.34 16 17 C 0.05 1.64 6.58 86.65 0.57 2.21 16 18 C -0.17 -7.34 9.46 30.59 0.29 -7.05 16 19 C -0.19 -8.80 8.97 30.59 0.27 -8.53 16 20 H 0.26 15.96 6.00 -92.71 -0.56 15.40 16 21 H 0.04 1.86 7.21 -2.39 -0.02 1.85 16 22 H 0.02 0.73 7.62 -2.39 -0.02 0.72 16 23 H 0.04 1.32 7.35 -2.39 -0.02 1.31 16 24 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 25 H 0.07 1.81 8.12 -2.39 -0.02 1.79 16 26 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.35 5.62 9.08 -89.69 -0.81 4.80 16 28 H 0.35 7.17 8.86 -89.69 -0.79 6.38 16 29 H 0.06 2.33 7.92 -2.39 -0.02 2.32 16 30 H 0.04 1.47 7.46 -2.39 -0.02 1.45 16 31 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 32 H 0.09 3.31 7.97 -2.39 -0.02 3.29 16 33 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 34 H 0.06 3.08 8.14 -2.38 -0.02 3.06 16 Total: -1.00 -64.14 274.33 -0.68 -64.82 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -0.31 Total: 20.87 kcal Atomic # 6 Polarization: -41.03 SS G_CDS: 3.07 Total: -37.96 kcal Atomic # 7 Polarization: -96.44 SS G_CDS: -5.49 Total: -101.93 kcal Atomic # 14 Polarization: 52.15 SS G_CDS: 2.05 Total: 54.20 kcal Total: -64.14 -0.68 -64.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130830696.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.544 kcal (2) G-P(sol) polarization free energy of solvation -64.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds