Wall clock time and date at job start Mon Mar 30 2020 02:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 120.00007 * 2 1 4 4 H 1.48503 * 109.46776 * 240.00268 * 3 2 1 5 5 H 1.48496 * 109.47187 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47205 * 120.00308 * 3 2 1 7 7 C 1.38807 * 119.99847 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00001 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00241 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00285 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.24662 * 34.45879 * 10 9 7 12 12 C 1.52821 * 109.25349 * 275.00282 * 10 9 7 13 13 C 1.53624 * 110.70255 * 185.99991 * 12 10 9 14 14 N 1.45664 * 107.80929 * 57.37031 * 13 12 10 15 15 C 1.47086 * 116.54038 * 177.32848 * 14 13 12 16 16 C 1.55189 * 103.52512 * 162.42059 * 15 14 13 17 17 C 1.54985 * 104.93324 * 336.00521 * 16 15 14 18 18 C 1.48724 * 109.34066 * 294.45383 * 14 13 12 19 19 H 1.09002 * 110.33987 * 308.88712 * 18 14 13 20 20 C 1.52251 * 107.50917 * 69.17512 * 18 14 13 21 21 H 0.96999 * 119.99589 * 359.97438 * 1 2 3 22 22 H 0.97001 * 119.99928 * 359.97438 * 9 7 2 23 23 H 1.08996 * 109.22917 * 65.67813 * 12 10 9 24 24 H 1.09001 * 109.19356 * 306.28733 * 12 10 9 25 25 H 1.08998 * 109.79371 * 297.79273 * 13 12 10 26 26 H 1.09003 * 109.79261 * 176.94761 * 13 12 10 27 27 H 1.09001 * 110.61211 * 280.93203 * 15 14 13 28 28 H 1.09003 * 110.61215 * 43.91176 * 15 14 13 29 29 H 1.09000 * 110.34880 * 94.86857 * 16 15 14 30 30 H 1.09000 * 110.34813 * 217.03392 * 16 15 14 31 31 H 1.09003 * 110.48533 * 238.83358 * 17 16 15 32 32 H 1.08997 * 110.49149 * 116.18585 * 17 16 15 33 33 H 1.09002 * 109.83721 * 56.60219 * 20 18 14 34 34 H 1.08994 * 109.83928 * 177.57035 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6567 0.0005 11 1 2.9725 -3.5437 0.5828 12 6 2.4189 -4.0303 -1.4367 13 6 3.0566 -5.4268 -1.4911 14 7 2.1133 -6.3704 -0.9064 15 6 2.5092 -7.7869 -0.9162 16 6 1.5714 -8.4331 0.1380 17 6 1.1640 -7.2693 1.0769 18 6 1.9406 -6.0628 0.5384 19 1 2.9113 -5.9885 1.0286 20 6 1.1962 -4.7385 0.6390 21 1 -0.4849 0.8401 0.0004 22 1 0.3556 -2.3880 0.0005 23 1 3.1233 -3.2983 -1.8318 24 1 1.5153 -4.0242 -2.0462 25 1 3.9849 -5.4312 -0.9199 26 1 3.2583 -5.7004 -2.5268 27 1 2.3409 -8.2256 -1.8998 28 1 3.5525 -7.8958 -0.6198 29 1 0.6909 -8.8555 -0.3462 30 1 2.1028 -9.2042 0.6959 31 1 1.4597 -7.4860 2.1034 32 1 0.0906 -7.0894 1.0179 33 1 0.2508 -4.8037 0.1004 34 1 1.0107 -4.4970 1.6855 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157950069.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:15 Heat of formation + Delta-G solvation = 9.390661 kcal Electronic energy + Delta-G solvation = -14312.227631 eV Core-core repulsion = 12051.633394 eV Total energy + Delta-G solvation = -2260.594237 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.64411 -35.65869 -33.03920 -31.85655 -29.98403 -28.23684 -26.45675 -23.45140 -22.38298 -20.99586 -20.18769 -19.36249 -17.06803 -15.71302 -15.13361 -14.84856 -14.60921 -13.73355 -13.47283 -13.35347 -12.62603 -12.53569 -12.24394 -11.95434 -11.29413 -11.21604 -10.95082 -10.81411 -10.75034 -10.52169 -10.36673 -10.16175 -10.10131 -9.67997 -9.53070 -8.82434 -8.16448 -6.89895 -5.71468 -2.99792 3.46671 3.50847 3.52037 4.20996 4.60422 4.72640 4.87483 5.07823 5.28725 5.45522 5.51175 5.54479 5.66404 5.68877 5.76796 5.81302 5.87302 6.00663 6.04219 6.13285 6.24057 6.31287 6.38789 6.53689 6.58981 6.74850 6.99807 7.14731 7.29222 7.50353 7.73588 8.47508 9.58215 10.17496 10.52749 11.51343 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.066717 B = 0.006996 C = 0.006631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.583667 B = 4001.309841 C = 4221.575023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.237 4.237 8 H 0.068 0.932 9 N -0.724 5.724 10 C 0.178 3.822 11 H 0.038 0.962 12 C -0.129 4.129 13 C 0.057 3.943 14 N -0.523 5.523 15 C 0.040 3.960 16 C -0.121 4.121 17 C -0.117 4.117 18 C 0.067 3.933 19 H 0.046 0.954 20 C -0.108 4.108 21 H 0.255 0.745 22 H 0.384 0.616 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.027 0.973 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.035 0.965 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.276 -15.226 0.112 15.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.086 0.914 9 N -0.365 5.365 10 C 0.068 3.932 11 H 0.056 0.944 12 C -0.169 4.169 13 C -0.071 4.071 14 N -0.248 5.248 15 C -0.088 4.088 16 C -0.159 4.159 17 C -0.155 4.155 18 C -0.041 4.041 19 H 0.064 0.936 20 C -0.147 4.147 21 H 0.065 0.935 22 H 0.218 0.782 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.045 0.955 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.053 0.947 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.946 -14.981 -0.204 15.493 hybrid contribution 1.035 0.883 0.269 1.386 sum 4.981 -14.098 0.066 14.952 Atomic orbital electron populations 1.69657 1.05084 1.25669 1.57840 1.24730 0.95496 0.97603 1.03202 0.86285 0.78520 0.83706 0.77791 1.21334 1.21704 1.21348 1.19210 0.90907 0.84247 1.42506 0.91376 1.42430 1.05781 0.99685 1.88581 1.19990 0.94247 0.86259 0.92663 0.94383 1.22319 1.00782 0.92781 1.01045 1.22065 0.92895 0.93605 0.98566 1.63914 1.45558 1.01207 1.14129 1.22816 0.96777 0.89751 0.99451 1.22521 0.99367 0.97374 0.96621 1.22150 1.01061 0.94134 0.98125 1.22389 0.98100 0.95337 0.88289 0.93624 1.21516 0.99701 0.92567 1.00878 0.93514 0.78235 0.92021 0.91718 0.95482 0.91636 0.90663 0.94725 0.91216 0.91853 0.91632 0.90789 0.91192 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.72 13.06 55.49 0.72 -27.99 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.72 29.55 -169.99 -5.02 17.69 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.24 -6.73 9.92 -15.06 -0.15 -6.88 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.46 16 9 N -0.72 -18.73 5.10 -53.85 -0.27 -19.01 16 10 C 0.18 3.72 2.79 -68.36 -0.19 3.53 16 11 H 0.04 0.82 8.07 -51.93 -0.42 0.40 16 12 C -0.13 -2.45 5.62 -26.50 -0.15 -2.60 16 13 C 0.06 0.90 5.87 -4.17 -0.02 0.88 16 14 N -0.52 -7.88 4.85 -224.50 -1.09 -8.97 16 15 C 0.04 0.49 6.71 -2.56 -0.02 0.47 16 16 C -0.12 -1.30 7.05 -24.52 -0.17 -1.47 16 17 C -0.12 -1.43 6.66 -25.55 -0.17 -1.60 16 18 C 0.07 1.01 2.50 -66.95 -0.17 0.84 16 19 H 0.05 0.69 7.98 -51.93 -0.41 0.28 16 20 C -0.11 -1.92 5.05 -27.45 -0.14 -2.06 16 21 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 22 H 0.38 10.56 7.81 -40.82 -0.32 10.24 16 23 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 24 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 25 H 0.03 0.41 7.99 -51.93 -0.41 0.00 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.92 8.02 -51.93 -0.42 0.51 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 268.96 15.07 4.05 4.05 Total: -1.00 -30.15 268.96 -8.64 -38.79 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -5.76 Total: 4.85 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -1.28 Total: -9.42 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: -0.64 Total: -55.97 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.15 -8.64 -38.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157950069.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.179 kcal (2) G-P(sol) polarization free energy of solvation -30.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds