Wall clock time and date at job start Mon Mar 30 2020 02:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 120.00007 * 2 1 4 4 H 1.48503 * 109.46776 * 240.00268 * 3 2 1 5 5 H 1.48496 * 109.47187 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47205 * 120.00308 * 3 2 1 7 7 C 1.38807 * 119.99847 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00001 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00241 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00285 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.24662 * 34.45879 * 10 9 7 12 12 C 1.52821 * 109.25349 * 275.00282 * 10 9 7 13 13 C 1.53624 * 110.70255 * 185.99991 * 12 10 9 14 14 N 1.45664 * 107.80929 * 57.37031 * 13 12 10 15 15 C 1.47086 * 116.54038 * 177.32848 * 14 13 12 16 16 C 1.55189 * 103.52512 * 162.42059 * 15 14 13 17 17 C 1.54985 * 104.93324 * 336.00521 * 16 15 14 18 18 C 1.48724 * 109.34066 * 294.45383 * 14 13 12 19 19 H 1.09002 * 110.33987 * 308.88712 * 18 14 13 20 20 C 1.52251 * 107.50917 * 69.17512 * 18 14 13 21 21 H 0.96999 * 119.99589 * 359.97438 * 1 2 3 22 22 H 0.97001 * 119.99928 * 359.97438 * 9 7 2 23 23 H 1.08996 * 109.22917 * 65.67813 * 12 10 9 24 24 H 1.09001 * 109.19356 * 306.28733 * 12 10 9 25 25 H 1.08998 * 109.79371 * 297.79273 * 13 12 10 26 26 H 1.09003 * 109.79261 * 176.94761 * 13 12 10 27 27 H 1.09001 * 110.61211 * 280.93203 * 15 14 13 28 28 H 1.09003 * 110.61215 * 43.91176 * 15 14 13 29 29 H 1.09000 * 110.34880 * 94.86857 * 16 15 14 30 30 H 1.09000 * 110.34813 * 217.03392 * 16 15 14 31 31 H 1.09003 * 110.48533 * 238.83358 * 17 16 15 32 32 H 1.08997 * 110.49149 * 116.18585 * 17 16 15 33 33 H 1.09002 * 109.83721 * 56.60219 * 20 18 14 34 34 H 1.08994 * 109.83928 * 177.57035 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6567 0.0005 11 1 2.9725 -3.5437 0.5828 12 6 2.4189 -4.0303 -1.4367 13 6 3.0566 -5.4268 -1.4911 14 7 2.1133 -6.3704 -0.9064 15 6 2.5092 -7.7869 -0.9162 16 6 1.5714 -8.4331 0.1380 17 6 1.1640 -7.2693 1.0769 18 6 1.9406 -6.0628 0.5384 19 1 2.9113 -5.9885 1.0286 20 6 1.1962 -4.7385 0.6390 21 1 -0.4849 0.8401 0.0004 22 1 0.3556 -2.3880 0.0005 23 1 3.1233 -3.2983 -1.8318 24 1 1.5153 -4.0242 -2.0462 25 1 3.9849 -5.4312 -0.9199 26 1 3.2583 -5.7004 -2.5268 27 1 2.3409 -8.2256 -1.8998 28 1 3.5525 -7.8958 -0.6198 29 1 0.6909 -8.8555 -0.3462 30 1 2.1028 -9.2042 0.6959 31 1 1.4597 -7.4860 2.1034 32 1 0.0906 -7.0894 1.0179 33 1 0.2508 -4.8037 0.1004 34 1 1.0107 -4.4970 1.6855 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157950069.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:15 Heat of formation + Delta-G solvation = -10.943179 kcal Electronic energy + Delta-G solvation = -14313.109373 eV Core-core repulsion = 12051.633394 eV Total energy + Delta-G solvation = -2261.475979 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.87238 -37.29054 -34.74157 -33.34735 -31.67605 -29.61009 -27.86522 -25.41302 -23.77135 -22.14286 -21.41801 -20.83511 -19.15242 -16.94844 -16.61677 -16.19882 -16.06887 -15.42086 -15.28730 -14.74494 -14.21811 -13.78934 -13.48829 -13.21719 -13.09154 -12.81431 -12.37234 -12.25318 -12.21959 -12.11072 -11.89280 -11.74978 -11.50459 -11.31105 -11.19887 -10.85184 -9.31340 -9.01562 -7.94210 -5.23285 1.45939 1.49399 1.55581 2.55706 3.08264 3.38007 3.61388 3.76982 3.97705 4.09094 4.13105 4.30962 4.39186 4.43106 4.56003 4.57873 4.70500 4.80342 4.83603 4.95171 4.99498 5.07225 5.11009 5.15533 5.33513 5.34300 5.44946 5.48284 5.58980 6.05142 6.27384 6.35271 7.33103 8.09248 8.33741 9.29376 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.066717 B = 0.006996 C = 0.006631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.583667 B = 4001.309841 C = 4221.575023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.974 3.026 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.277 1.277 7 C -0.242 4.242 8 H 0.073 0.927 9 N -0.738 5.738 10 C 0.174 3.826 11 H 0.031 0.969 12 C -0.119 4.119 13 C 0.068 3.932 14 N -0.539 5.539 15 C 0.039 3.961 16 C -0.114 4.114 17 C -0.115 4.115 18 C 0.069 3.931 19 H 0.048 0.952 20 C -0.098 4.098 21 H 0.251 0.749 22 H 0.372 0.628 23 H 0.046 0.954 24 H 0.045 0.955 25 H 0.035 0.965 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.044 0.956 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.557 -16.862 0.229 17.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.269 4.269 3 Si 0.802 3.198 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.203 1.203 7 C -0.374 4.374 8 H 0.091 0.909 9 N -0.377 5.377 10 C 0.065 3.935 11 H 0.049 0.951 12 C -0.160 4.160 13 C -0.061 4.061 14 N -0.265 5.265 15 C -0.089 4.089 16 C -0.152 4.152 17 C -0.153 4.153 18 C -0.039 4.039 19 H 0.065 0.935 20 C -0.137 4.137 21 H 0.060 0.940 22 H 0.203 0.797 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.053 0.947 26 H 0.100 0.900 27 H 0.104 0.896 28 H 0.062 0.938 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.266 -16.666 -0.090 17.478 hybrid contribution 0.646 1.332 0.229 1.498 sum 5.912 -15.334 0.139 16.434 Atomic orbital electron populations 1.69823 1.06657 1.26119 1.59599 1.25573 0.96388 1.01099 1.03812 0.85208 0.77205 0.79160 0.78180 1.20439 1.22049 1.20339 1.19591 0.91314 0.85369 1.41103 0.90912 1.42647 1.05371 1.00956 1.88756 1.20225 0.94016 0.85305 0.93928 0.95059 1.22110 0.99779 0.95141 0.98964 1.21900 0.92798 0.91502 0.99920 1.63872 1.45846 1.02816 1.13948 1.22935 0.97672 0.87574 1.00686 1.22526 0.99583 0.97069 0.95999 1.22158 1.00316 0.93369 0.99439 1.22343 0.98092 0.94647 0.88836 0.93450 1.21377 0.98853 0.93532 0.99947 0.94008 0.79683 0.93486 0.93646 0.94702 0.89953 0.89606 0.93752 0.90603 0.89477 0.89891 0.91379 0.92507 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.05 13.06 21.65 0.28 -60.76 16 2 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 3 Si 0.97 47.08 29.55 68.60 2.03 49.11 16 4 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 5 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 6 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 7 C -0.24 -13.91 9.92 84.03 0.83 -13.08 16 8 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 9 N -0.74 -39.16 5.10 -324.28 -1.65 -40.82 16 10 C 0.17 7.32 2.79 44.71 0.12 7.45 16 11 H 0.03 1.36 8.07 -2.39 -0.02 1.34 16 12 C -0.12 -4.58 5.62 30.74 0.17 -4.41 16 13 C 0.07 2.01 5.87 86.75 0.51 2.52 16 14 N -0.54 -15.14 4.85 -864.19 -4.19 -19.32 16 15 C 0.04 0.81 6.71 87.02 0.58 1.39 16 16 C -0.11 -2.03 7.05 32.02 0.23 -1.81 16 17 C -0.11 -2.51 6.66 31.36 0.21 -2.30 16 18 C 0.07 1.96 2.50 44.40 0.11 2.07 16 19 H 0.05 1.33 7.98 -2.39 -0.02 1.31 16 20 C -0.10 -3.51 5.05 30.13 0.15 -3.36 16 21 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 22 H 0.37 21.21 7.81 -92.71 -0.72 20.49 16 23 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.03 0.99 7.99 -2.39 -0.02 0.97 16 26 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.09 1.18 8.14 -2.39 -0.02 1.17 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.07 1.57 8.02 -2.39 -0.02 1.55 16 33 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -64.77 268.96 0.19 -64.58 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.33 Total: 22.80 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: 3.39 Total: -15.58 kcal Atomic # 7 Polarization: -115.35 SS G_CDS: -5.56 Total: -120.90 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Total: -64.77 0.19 -64.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157950069.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.637 kcal (2) G-P(sol) polarization free energy of solvation -64.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds