Wall clock time and date at job start Mon Mar 30 2020 02:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99882 * 2 1 4 4 H 1.48499 * 109.46923 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47206 * 299.99461 * 3 2 1 6 6 H 1.48502 * 109.46969 * 59.99561 * 3 2 1 7 7 C 1.38805 * 120.00258 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00144 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99933 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00276 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.24553 * 34.99792 * 10 9 7 12 12 C 1.52826 * 109.24725 * 275.54323 * 10 9 7 13 13 C 1.53642 * 110.64248 * 293.61946 * 12 10 9 14 14 N 1.45540 * 107.85427 * 302.86610 * 13 12 10 15 15 C 1.46329 * 117.22204 * 185.56381 * 14 13 12 16 16 C 1.54798 * 105.96305 * 208.04701 * 15 14 13 17 17 C 1.55338 * 104.99151 * 3.64711 * 16 15 14 18 18 C 1.48651 * 109.72126 * 65.32066 * 14 13 12 19 19 H 1.09003 * 111.11585 * 52.55223 * 18 14 13 20 20 C 1.52365 * 107.34906 * 290.46285 * 18 14 13 21 21 H 0.97001 * 120.00079 * 0.02562 * 1 2 3 22 22 H 0.97006 * 120.00182 * 359.97438 * 9 7 2 23 23 H 1.09006 * 109.24296 * 53.91676 * 12 10 9 24 24 H 1.09000 * 109.24564 * 173.31994 * 12 10 9 25 25 H 1.08990 * 109.78277 * 62.45181 * 13 12 10 26 26 H 1.08997 * 109.78362 * 183.27907 * 13 12 10 27 27 H 1.09000 * 110.16088 * 327.17028 * 15 14 13 28 28 H 1.09007 * 110.15710 * 88.85507 * 15 14 13 29 29 H 1.08997 * 110.33719 * 122.52104 * 16 15 14 30 30 H 1.09002 * 110.34367 * 244.76924 * 16 15 14 31 31 H 1.08997 * 110.90582 * 140.38959 * 17 16 15 32 32 H 1.08991 * 110.90473 * 264.00346 * 17 16 15 33 33 H 1.08997 * 109.83088 * 303.30090 * 20 18 14 34 34 H 1.09001 * 109.83760 * 182.34543 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0017 11 1 2.9674 -3.5461 0.5926 12 6 2.4318 -4.0240 -1.4340 13 6 1.1730 -4.3297 -2.2600 14 7 0.4506 -5.4023 -1.5922 15 6 -0.7248 -5.9441 -2.2750 16 6 -1.6614 -6.4678 -1.1594 17 6 -0.9548 -6.0865 0.1704 18 6 -0.0401 -4.9298 -0.2710 19 1 -0.6037 -4.0021 -0.3702 20 6 1.1771 -4.7488 0.6275 21 1 -0.4850 0.8400 -0.0004 22 1 0.3556 -2.3881 0.0005 23 1 2.9673 -3.1912 -1.8900 24 1 3.0769 -4.9026 -1.4238 25 1 0.5443 -3.4412 -2.3169 26 1 1.4579 -4.6458 -3.2635 27 1 -1.2224 -5.1600 -2.8457 28 1 -0.4324 -6.7606 -2.9354 29 1 -2.6352 -5.9825 -1.2235 30 1 -1.7709 -7.5498 -1.2335 31 1 -1.6784 -5.7490 0.9124 32 1 -0.3684 -6.9220 0.5526 33 1 1.7342 -5.6836 0.6882 34 1 0.8590 -4.4415 1.6237 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157950204.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:18 Heat of formation + Delta-G solvation = 10.658463 kcal Electronic energy + Delta-G solvation = -14641.719261 eV Core-core repulsion = 12381.180000 eV Total energy + Delta-G solvation = -2260.539261 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.50952 -35.56855 -32.80673 -31.73579 -29.70615 -28.20233 -26.47612 -23.47897 -22.43997 -20.86561 -20.54116 -18.46052 -17.10027 -15.47589 -15.30340 -14.69268 -14.24835 -13.74688 -13.56782 -13.21071 -12.60108 -12.36821 -11.94639 -11.83536 -11.46398 -11.06098 -10.87545 -10.74282 -10.70815 -10.49455 -10.33260 -10.08625 -9.91666 -9.62025 -9.49840 -8.84442 -7.83269 -6.89887 -5.73782 -3.01243 3.44359 3.50253 3.52269 4.40403 4.62845 4.88116 5.01613 5.20944 5.51361 5.55055 5.65112 5.72848 5.77679 5.87791 5.91530 5.96399 6.07678 6.09948 6.20522 6.21566 6.34626 6.42243 6.43794 6.60226 6.77553 6.87560 6.98483 7.03210 7.47681 7.73588 7.74811 8.45632 9.56413 10.16034 10.50610 11.49304 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.047193 B = 0.008572 C = 0.008300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.170398 B = 3265.550803 C = 3372.674101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.017 4.017 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.233 4.233 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.172 3.828 11 H 0.046 0.954 12 C -0.125 4.125 13 C 0.068 3.932 14 N -0.538 5.538 15 C 0.049 3.951 16 C -0.127 4.127 17 C -0.117 4.117 18 C 0.070 3.930 19 H 0.062 0.938 20 C -0.107 4.107 21 H 0.253 0.747 22 H 0.382 0.618 23 H 0.063 0.937 24 H 0.050 0.950 25 H 0.043 0.957 26 H 0.057 0.943 27 H 0.034 0.966 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.901 -12.094 -1.982 12.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.212 4.212 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.364 4.364 8 H 0.088 0.912 9 N -0.367 5.367 10 C 0.062 3.938 11 H 0.064 0.936 12 C -0.166 4.166 13 C -0.060 4.060 14 N -0.263 5.263 15 C -0.079 4.079 16 C -0.165 4.165 17 C -0.155 4.155 18 C -0.038 4.038 19 H 0.080 0.920 20 C -0.145 4.145 21 H 0.063 0.937 22 H 0.216 0.784 23 H 0.082 0.918 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.052 0.948 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.398 -12.327 -1.971 12.490 hybrid contribution -0.453 1.693 -0.330 1.784 sum -0.852 -10.634 -2.300 10.913 Atomic orbital electron populations 1.69669 1.05087 1.25367 1.58312 1.24718 0.95488 0.97595 1.03407 0.86144 0.78801 0.84336 0.77107 1.20598 1.22025 1.21972 1.19317 0.91035 0.84237 1.41832 0.91177 1.42554 1.05702 0.99821 1.88644 1.20321 0.94356 0.86244 0.92893 0.93572 1.22173 0.96011 0.99628 0.98781 1.21820 0.96007 0.91815 0.96335 1.62816 1.24080 1.35013 1.04440 1.22450 0.90678 0.98593 0.96208 1.22607 0.98198 1.00711 0.94978 1.22390 0.98177 0.98472 0.96454 1.22528 0.95109 0.96265 0.89894 0.92016 1.21746 0.95885 0.98932 0.97970 0.93702 0.78402 0.91784 0.93177 0.93861 0.92488 0.94759 0.91231 0.91811 0.91552 0.91427 0.91021 0.91564 0.91710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.44 13.06 55.49 0.72 -27.71 16 2 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 3 Si 0.90 22.61 29.55 -169.99 -5.02 17.59 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 7 C -0.23 -6.49 9.91 -15.06 -0.15 -6.64 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.72 -18.24 4.67 -53.19 -0.25 -18.48 16 10 C 0.17 3.52 3.06 -67.69 -0.21 3.32 16 11 H 0.05 0.97 8.07 -51.93 -0.42 0.55 16 12 C -0.13 -2.37 5.68 -26.49 -0.15 -2.52 16 13 C 0.07 1.24 5.71 -4.23 -0.02 1.22 16 14 N -0.54 -8.97 4.65 -225.06 -1.05 -10.01 16 15 C 0.05 0.70 6.86 -3.19 -0.02 0.68 16 16 C -0.13 -1.61 6.99 -24.54 -0.17 -1.78 16 17 C -0.12 -1.62 6.61 -25.01 -0.17 -1.79 16 18 C 0.07 1.20 2.46 -66.58 -0.16 1.03 16 19 H 0.06 1.25 6.56 -51.93 -0.34 0.91 16 20 C -0.11 -1.88 5.33 -26.72 -0.14 -2.02 16 21 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 22 H 0.38 10.22 6.20 -40.82 -0.25 9.97 16 23 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 24 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.04 0.92 7.85 -51.93 -0.41 0.51 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.03 0.51 8.04 -51.93 -0.42 0.09 16 28 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 265.59 15.07 4.00 4.00 Total: -1.00 -29.56 265.59 -8.49 -38.05 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -5.61 Total: 5.63 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -1.29 Total: -9.07 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: -0.57 Total: -56.21 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.56 -8.49 -38.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157950204.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.712 kcal (2) G-P(sol) polarization free energy of solvation -29.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds