Wall clock time and date at job start Mon Mar 30 2020 02:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99882 * 2 1 4 4 H 1.48499 * 109.46923 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47206 * 299.99461 * 3 2 1 6 6 H 1.48502 * 109.46969 * 59.99561 * 3 2 1 7 7 C 1.38805 * 120.00258 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00144 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99933 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00276 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.24553 * 34.99792 * 10 9 7 12 12 C 1.52826 * 109.24725 * 275.54323 * 10 9 7 13 13 C 1.53642 * 110.64248 * 293.61946 * 12 10 9 14 14 N 1.45540 * 107.85427 * 302.86610 * 13 12 10 15 15 C 1.46329 * 117.22204 * 185.56381 * 14 13 12 16 16 C 1.54798 * 105.96305 * 208.04701 * 15 14 13 17 17 C 1.55338 * 104.99151 * 3.64711 * 16 15 14 18 18 C 1.48651 * 109.72126 * 65.32066 * 14 13 12 19 19 H 1.09003 * 111.11585 * 52.55223 * 18 14 13 20 20 C 1.52365 * 107.34906 * 290.46285 * 18 14 13 21 21 H 0.97001 * 120.00079 * 0.02562 * 1 2 3 22 22 H 0.97006 * 120.00182 * 359.97438 * 9 7 2 23 23 H 1.09006 * 109.24296 * 53.91676 * 12 10 9 24 24 H 1.09000 * 109.24564 * 173.31994 * 12 10 9 25 25 H 1.08990 * 109.78277 * 62.45181 * 13 12 10 26 26 H 1.08997 * 109.78362 * 183.27907 * 13 12 10 27 27 H 1.09000 * 110.16088 * 327.17028 * 15 14 13 28 28 H 1.09007 * 110.15710 * 88.85507 * 15 14 13 29 29 H 1.08997 * 110.33719 * 122.52104 * 16 15 14 30 30 H 1.09002 * 110.34367 * 244.76924 * 16 15 14 31 31 H 1.08997 * 110.90582 * 140.38959 * 17 16 15 32 32 H 1.08991 * 110.90473 * 264.00346 * 17 16 15 33 33 H 1.08997 * 109.83088 * 303.30090 * 20 18 14 34 34 H 1.09001 * 109.83760 * 182.34543 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0017 11 1 2.9674 -3.5461 0.5926 12 6 2.4318 -4.0240 -1.4340 13 6 1.1730 -4.3297 -2.2600 14 7 0.4506 -5.4023 -1.5922 15 6 -0.7248 -5.9441 -2.2750 16 6 -1.6614 -6.4678 -1.1594 17 6 -0.9548 -6.0865 0.1704 18 6 -0.0401 -4.9298 -0.2710 19 1 -0.6037 -4.0021 -0.3702 20 6 1.1771 -4.7488 0.6275 21 1 -0.4850 0.8400 -0.0004 22 1 0.3556 -2.3881 0.0005 23 1 2.9673 -3.1912 -1.8900 24 1 3.0769 -4.9026 -1.4238 25 1 0.5443 -3.4412 -2.3169 26 1 1.4579 -4.6458 -3.2635 27 1 -1.2224 -5.1600 -2.8457 28 1 -0.4324 -6.7606 -2.9354 29 1 -2.6352 -5.9825 -1.2235 30 1 -1.7709 -7.5498 -1.2335 31 1 -1.6784 -5.7490 0.9124 32 1 -0.3684 -6.9220 0.5526 33 1 1.7342 -5.6836 0.6882 34 1 0.8590 -4.4415 1.6237 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157950204.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:18 Heat of formation + Delta-G solvation = -8.830754 kcal Electronic energy + Delta-G solvation = -14642.564377 eV Core-core repulsion = 12381.180000 eV Total energy + Delta-G solvation = -2261.384377 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.88286 -37.18747 -34.62221 -33.26396 -31.44733 -29.67286 -27.90670 -25.53482 -23.90136 -22.25089 -21.70191 -20.05539 -19.17627 -16.87834 -16.64885 -16.44114 -15.73522 -15.52578 -15.29173 -14.74424 -14.01472 -13.89512 -13.33818 -13.28226 -13.08834 -12.87068 -12.55436 -12.25204 -12.11510 -12.00745 -11.96404 -11.65343 -11.49055 -11.34969 -11.05732 -10.84208 -9.25309 -8.96443 -7.94110 -5.21193 1.45378 1.45805 1.55932 2.55748 3.08826 3.39040 3.70285 3.80658 3.98773 4.12310 4.25777 4.26620 4.31404 4.46478 4.51734 4.69677 4.76741 4.84372 4.87183 4.99522 5.04012 5.12126 5.17756 5.19176 5.32068 5.38467 5.40921 5.47852 5.55549 6.10032 6.28814 6.38048 7.34311 8.12380 8.35518 9.29937 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.047193 B = 0.008572 C = 0.008300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.170398 B = 3265.550803 C = 3372.674101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.296 1.296 6 H -0.294 1.294 7 C -0.232 4.232 8 H 0.075 0.925 9 N -0.734 5.734 10 C 0.162 3.838 11 H 0.042 0.958 12 C -0.118 4.118 13 C 0.074 3.926 14 N -0.532 5.532 15 C 0.042 3.958 16 C -0.121 4.121 17 C -0.111 4.111 18 C 0.067 3.933 19 H 0.021 0.979 20 C -0.097 4.097 21 H 0.248 0.752 22 H 0.370 0.630 23 H 0.044 0.956 24 H 0.076 0.924 25 H 0.002 0.998 26 H 0.076 0.924 27 H 0.021 0.979 28 H 0.091 0.909 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.252 -13.957 -2.058 14.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.272 4.272 3 Si 0.800 3.200 4 H -0.190 1.190 5 H -0.224 1.224 6 H -0.221 1.221 7 C -0.364 4.364 8 H 0.093 0.907 9 N -0.375 5.375 10 C 0.054 3.946 11 H 0.060 0.940 12 C -0.158 4.158 13 C -0.054 4.054 14 N -0.257 5.257 15 C -0.085 4.085 16 C -0.158 4.158 17 C -0.149 4.149 18 C -0.041 4.041 19 H 0.039 0.961 20 C -0.136 4.136 21 H 0.057 0.943 22 H 0.203 0.797 23 H 0.063 0.937 24 H 0.095 0.905 25 H 0.021 0.979 26 H 0.094 0.906 27 H 0.040 0.960 28 H 0.109 0.891 29 H 0.085 0.915 30 H 0.112 0.888 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.285 -14.233 -2.048 14.383 hybrid contribution -0.629 2.199 -0.323 2.310 sum -0.344 -12.034 -2.371 12.271 Atomic orbital electron populations 1.69832 1.06604 1.25696 1.60268 1.25516 0.96337 1.00949 1.04349 0.85104 0.78291 0.80090 0.76508 1.19025 1.22364 1.22148 1.19687 0.91403 0.85388 1.39962 0.90748 1.42731 1.05321 1.00890 1.88593 1.20602 0.94361 0.85449 0.94180 0.93969 1.22037 0.96530 0.99935 0.97294 1.21696 0.95283 0.90968 0.97455 1.62880 1.25015 1.33495 1.04294 1.22629 0.90170 0.98739 0.97010 1.22615 0.97601 1.02402 0.93228 1.22385 0.97827 0.97343 0.97320 1.22477 0.95149 0.96061 0.90446 0.96056 1.21659 0.95799 0.98697 0.97407 0.94271 0.79729 0.93746 0.90506 0.97947 0.90594 0.96040 0.89074 0.91549 0.88757 0.90862 0.89345 0.89002 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.82 13.06 21.65 0.28 -60.54 16 2 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 3 Si 0.97 47.14 29.55 68.60 2.03 49.17 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 6 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 7 C -0.23 -13.14 9.91 84.03 0.83 -12.30 16 8 H 0.07 4.06 7.83 -2.91 -0.02 4.03 16 9 N -0.73 -37.82 4.67 -322.20 -1.50 -39.32 16 10 C 0.16 6.62 3.06 45.15 0.14 6.76 16 11 H 0.04 1.74 8.07 -2.39 -0.02 1.73 16 12 C -0.12 -4.36 5.68 30.75 0.17 -4.18 16 13 C 0.07 2.69 5.71 86.78 0.50 3.18 16 14 N -0.53 -16.85 4.65 -865.96 -4.02 -20.87 16 15 C 0.04 1.13 6.86 87.03 0.60 1.72 16 16 C -0.12 -2.70 6.99 32.01 0.22 -2.47 16 17 C -0.11 -2.79 6.61 31.71 0.21 -2.58 16 18 C 0.07 2.23 2.46 44.68 0.11 2.34 16 19 H 0.02 0.90 6.56 -2.39 -0.02 0.88 16 20 C -0.10 -3.31 5.33 30.60 0.16 -3.15 16 21 H 0.25 15.08 8.31 -92.71 -0.77 14.30 16 22 H 0.37 20.65 6.20 -92.70 -0.57 20.08 16 23 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 24 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 25 H 0.00 0.10 7.85 -2.39 -0.02 0.08 16 26 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 27 H 0.02 0.62 8.04 -2.39 -0.02 0.60 16 28 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 29 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.09 1.97 8.10 -2.39 -0.02 1.95 16 33 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 34 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -64.04 265.59 0.68 -63.36 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 0.49 Total: 23.09 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: 3.41 Total: -14.89 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -5.25 Total: -120.73 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -64.04 0.68 -63.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157950204.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.532 kcal (2) G-P(sol) polarization free energy of solvation -64.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds