Wall clock time and date at job start Mon Mar 30 2020 02:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00455 * 2 1 4 4 H 1.48506 * 109.46719 * 270.00189 * 3 2 1 5 5 H 1.48501 * 109.46793 * 29.99844 * 3 2 1 6 6 H 1.48489 * 109.47333 * 150.00088 * 3 2 1 7 7 C 1.38811 * 119.99400 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 0.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 179.72313 * 7 2 1 10 10 C 1.46504 * 119.99781 * 180.27904 * 9 7 2 11 11 H 1.09006 * 109.24136 * 324.45482 * 10 9 7 12 12 C 1.52811 * 109.25000 * 83.87795 * 10 9 7 13 13 C 1.53624 * 110.70350 * 66.54065 * 12 10 9 14 14 N 1.45672 * 107.79864 * 57.37545 * 13 12 10 15 15 C 1.47098 * 116.53650 * 177.32376 * 14 13 12 16 16 C 1.55187 * 103.52237 * 162.42228 * 15 14 13 17 17 C 1.55979 * 105.04243 * 335.46513 * 16 15 14 18 18 C 1.48722 * 109.34092 * 294.44519 * 14 13 12 19 19 H 1.08993 * 110.34794 * 309.51859 * 18 14 13 20 20 C 1.52253 * 107.50306 * 69.80647 * 18 14 13 21 21 H 0.97009 * 119.99492 * 0.02562 * 1 2 3 22 22 H 0.97000 * 119.99808 * 0.27579 * 9 7 2 23 23 H 1.09000 * 109.23338 * 186.85694 * 12 10 9 24 24 H 1.09003 * 109.23379 * 306.22719 * 12 10 9 25 25 H 1.08998 * 109.79739 * 297.80386 * 13 12 10 26 26 H 1.09000 * 109.84563 * 176.97556 * 13 12 10 27 27 H 1.09005 * 110.60968 * 280.92989 * 15 14 13 28 28 H 1.08999 * 110.61268 * 43.75663 * 15 14 13 29 29 H 1.09001 * 110.34982 * 94.86161 * 16 15 14 30 30 H 1.09002 * 110.34862 * 217.13644 * 16 15 14 31 31 H 1.09003 * 111.03792 * 239.63954 * 17 16 15 32 32 H 1.09003 * 110.39074 * 116.68788 * 17 16 15 33 33 H 1.09001 * 109.83777 * 177.57314 * 20 18 14 34 34 H 1.08996 * 109.89556 * 56.63650 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3796 -1.2023 -0.0052 10 6 4.1120 -2.4711 -0.0108 11 1 3.5688 -3.2020 0.5883 12 6 4.2246 -2.9815 -1.4468 13 6 5.1110 -2.0492 -2.2866 14 7 6.4122 -1.9673 -1.6368 15 6 7.4383 -1.1644 -2.3195 16 6 8.4892 -0.8984 -1.2090 17 6 7.7008 -1.0185 0.1315 18 6 6.2623 -1.2988 -0.3168 19 1 5.7114 -0.3647 -0.4254 20 6 5.5065 -2.2537 0.5970 21 1 -0.4850 0.8402 -0.0004 22 1 3.8646 -0.3622 -0.0056 23 1 4.6600 -3.9807 -1.4396 24 1 3.2301 -3.0272 -1.8906 25 1 4.6606 -1.0579 -2.3369 26 1 5.2254 -2.4541 -3.2921 27 1 7.8821 -1.7270 -3.1409 28 1 7.0144 -0.2280 -2.6822 29 1 9.2863 -1.6403 -1.2559 30 1 8.8994 0.1066 -1.3082 31 1 7.7495 -0.0889 0.6987 32 1 8.0843 -1.8488 0.7246 33 1 5.4126 -1.8175 1.5915 34 1 6.0354 -3.2047 0.6587 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157950365.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:21 Heat of formation + Delta-G solvation = 15.209038 kcal Electronic energy + Delta-G solvation = -14727.038511 eV Core-core repulsion = 12466.696577 eV Total energy + Delta-G solvation = -2260.341934 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.68747 -35.73856 -32.85489 -31.87131 -30.15634 -28.48177 -26.70742 -23.18192 -22.53382 -21.13548 -20.58842 -18.54214 -17.67009 -15.62839 -15.27511 -14.80070 -14.44653 -13.94150 -13.74796 -13.11662 -12.75359 -12.36849 -12.16763 -12.07680 -11.79147 -11.23308 -10.96448 -10.94350 -10.77437 -10.59519 -10.38546 -10.16466 -10.06040 -9.69782 -9.54050 -8.88361 -8.09629 -7.22668 -5.75608 -3.09698 3.35491 3.38384 3.43786 4.26446 4.59354 4.74156 4.85796 5.10592 5.33482 5.42689 5.46231 5.51716 5.64215 5.69016 5.75162 5.80252 5.87049 5.94943 6.04944 6.07771 6.19261 6.26433 6.27502 6.43904 6.63583 6.72220 6.85075 6.88141 7.27137 7.53675 8.02583 8.44180 9.23140 9.96115 10.16746 11.43167 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.037673 B = 0.010526 C = 0.009606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.052993 B = 2659.334969 C = 2914.137561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.880 3.120 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.238 4.238 8 H 0.091 0.909 9 N -0.749 5.749 10 C 0.177 3.823 11 H 0.056 0.944 12 C -0.126 4.126 13 C 0.061 3.939 14 N -0.523 5.523 15 C 0.039 3.961 16 C -0.120 4.120 17 C -0.118 4.118 18 C 0.062 3.938 19 H 0.050 0.950 20 C -0.110 4.110 21 H 0.258 0.742 22 H 0.358 0.642 23 H 0.054 0.946 24 H 0.070 0.930 25 H 0.039 0.961 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.036 0.964 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.945 -2.759 -2.193 16.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.192 4.192 3 Si 0.711 3.289 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.368 4.368 8 H 0.109 0.891 9 N -0.393 5.393 10 C 0.068 3.932 11 H 0.074 0.926 12 C -0.167 4.167 13 C -0.067 4.067 14 N -0.248 5.248 15 C -0.089 4.089 16 C -0.158 4.158 17 C -0.156 4.156 18 C -0.046 4.046 19 H 0.068 0.932 20 C -0.149 4.149 21 H 0.068 0.932 22 H 0.191 0.809 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.057 0.943 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 15.838 -3.359 -2.179 16.336 hybrid contribution 0.147 2.166 -0.275 2.188 sum 15.986 -1.193 -2.454 16.217 Atomic orbital electron populations 1.69700 1.05023 1.25656 1.57986 1.24646 0.95184 0.97000 1.02405 0.86613 0.79263 0.85398 0.77668 1.21290 1.21683 1.20483 1.19109 0.80728 0.94640 1.42299 0.89149 1.42919 1.03906 1.02107 1.90391 1.20298 0.90454 0.89080 0.93363 0.92629 1.22146 0.98793 0.97507 0.98209 1.21929 0.88013 0.99693 0.97039 1.63944 1.08832 1.48233 1.03790 1.22812 0.93361 0.95872 0.96848 1.22677 0.97679 1.01020 0.94437 1.22350 0.94844 1.01503 0.96891 1.22384 0.95164 0.96229 0.90843 0.93228 1.21789 0.96177 0.99044 0.97857 0.93150 0.80860 0.92714 0.91185 0.94308 0.91923 0.90674 0.94602 0.91210 0.91936 0.91587 0.90998 0.91616 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.60 13.97 55.49 0.78 -28.83 16 2 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 3 Si 0.88 22.46 27.73 -169.99 -4.71 17.74 16 4 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 5 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 6 H -0.28 -6.73 6.52 56.52 0.37 -6.37 16 7 C -0.24 -6.72 10.39 -15.06 -0.16 -6.87 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 9 N -0.75 -17.81 4.48 -53.18 -0.24 -18.05 16 10 C 0.18 3.48 3.05 -67.68 -0.21 3.27 16 11 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 12 C -0.13 -2.29 5.66 -26.50 -0.15 -2.44 16 13 C 0.06 1.05 5.74 -4.16 -0.02 1.03 16 14 N -0.52 -8.16 4.85 -224.49 -1.09 -9.25 16 15 C 0.04 0.52 6.71 -2.56 -0.02 0.50 16 16 C -0.12 -1.38 7.08 -23.98 -0.17 -1.55 16 17 C -0.12 -1.51 6.73 -25.01 -0.17 -1.68 16 18 C 0.06 0.99 2.36 -66.95 -0.16 0.83 16 19 H 0.05 0.92 6.36 -51.93 -0.33 0.59 16 20 C -0.11 -1.82 5.29 -26.77 -0.14 -1.96 16 21 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 22 H 0.36 8.50 4.03 -40.82 -0.16 8.34 16 23 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 25 H 0.04 0.76 7.79 -51.93 -0.40 0.35 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.86 8.00 -51.93 -0.42 0.45 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 262.31 15.07 3.95 3.95 Total: -1.00 -30.52 262.31 -8.15 -38.67 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -5.55 Total: 4.63 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -1.29 Total: -8.87 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: -0.55 Total: -56.13 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.71 Total: 17.74 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.52 -8.15 -38.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157950365.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.880 kcal (2) G-P(sol) polarization free energy of solvation -30.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds