Wall clock time and date at job start Mon Mar 30 2020 02:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00455 * 2 1 4 4 H 1.48506 * 109.46719 * 270.00189 * 3 2 1 5 5 H 1.48501 * 109.46793 * 29.99844 * 3 2 1 6 6 H 1.48489 * 109.47333 * 150.00088 * 3 2 1 7 7 C 1.38811 * 119.99400 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 0.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 179.72313 * 7 2 1 10 10 C 1.46504 * 119.99781 * 180.27904 * 9 7 2 11 11 H 1.09006 * 109.24136 * 324.45482 * 10 9 7 12 12 C 1.52811 * 109.25000 * 83.87795 * 10 9 7 13 13 C 1.53624 * 110.70350 * 66.54065 * 12 10 9 14 14 N 1.45672 * 107.79864 * 57.37545 * 13 12 10 15 15 C 1.47098 * 116.53650 * 177.32376 * 14 13 12 16 16 C 1.55187 * 103.52237 * 162.42228 * 15 14 13 17 17 C 1.55979 * 105.04243 * 335.46513 * 16 15 14 18 18 C 1.48722 * 109.34092 * 294.44519 * 14 13 12 19 19 H 1.08993 * 110.34794 * 309.51859 * 18 14 13 20 20 C 1.52253 * 107.50306 * 69.80647 * 18 14 13 21 21 H 0.97009 * 119.99492 * 0.02562 * 1 2 3 22 22 H 0.97000 * 119.99808 * 0.27579 * 9 7 2 23 23 H 1.09000 * 109.23338 * 186.85694 * 12 10 9 24 24 H 1.09003 * 109.23379 * 306.22719 * 12 10 9 25 25 H 1.08998 * 109.79739 * 297.80386 * 13 12 10 26 26 H 1.09000 * 109.84563 * 176.97556 * 13 12 10 27 27 H 1.09005 * 110.60968 * 280.92989 * 15 14 13 28 28 H 1.08999 * 110.61268 * 43.75663 * 15 14 13 29 29 H 1.09001 * 110.34982 * 94.86161 * 16 15 14 30 30 H 1.09002 * 110.34862 * 217.13644 * 16 15 14 31 31 H 1.09003 * 111.03792 * 239.63954 * 17 16 15 32 32 H 1.09003 * 110.39074 * 116.68788 * 17 16 15 33 33 H 1.09001 * 109.83777 * 177.57314 * 20 18 14 34 34 H 1.08996 * 109.89556 * 56.63650 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3796 -1.2023 -0.0052 10 6 4.1120 -2.4711 -0.0108 11 1 3.5688 -3.2020 0.5883 12 6 4.2246 -2.9815 -1.4468 13 6 5.1110 -2.0492 -2.2866 14 7 6.4122 -1.9673 -1.6368 15 6 7.4383 -1.1644 -2.3195 16 6 8.4892 -0.8984 -1.2090 17 6 7.7008 -1.0185 0.1315 18 6 6.2623 -1.2988 -0.3168 19 1 5.7114 -0.3647 -0.4254 20 6 5.5065 -2.2537 0.5970 21 1 -0.4850 0.8402 -0.0004 22 1 3.8646 -0.3622 -0.0056 23 1 4.6600 -3.9807 -1.4396 24 1 3.2301 -3.0272 -1.8906 25 1 4.6606 -1.0579 -2.3369 26 1 5.2254 -2.4541 -3.2921 27 1 7.8821 -1.7270 -3.1409 28 1 7.0144 -0.2280 -2.6822 29 1 9.2863 -1.6403 -1.2559 30 1 8.8994 0.1066 -1.3082 31 1 7.7495 -0.0889 0.6987 32 1 8.0843 -1.8488 0.7246 33 1 5.4126 -1.8175 1.5915 34 1 6.0354 -3.2047 0.6587 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157950365.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:21 Heat of formation + Delta-G solvation = -5.720257 kcal Electronic energy + Delta-G solvation = -14727.946074 eV Core-core repulsion = 12466.696577 eV Total energy + Delta-G solvation = -2261.249496 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.96651 -37.30725 -34.64160 -33.39234 -31.91907 -29.81349 -28.01429 -25.19664 -23.93678 -22.39426 -21.67412 -20.05059 -19.79601 -16.89989 -16.69377 -16.31703 -16.04281 -15.54346 -15.20072 -14.84292 -14.31555 -13.89367 -13.54703 -13.43121 -13.21887 -12.96711 -12.49407 -12.32009 -12.12697 -11.99386 -11.95343 -11.79781 -11.54927 -11.34120 -11.12589 -10.90396 -9.42869 -9.25304 -8.04449 -5.35815 1.30193 1.32787 1.40514 2.43838 3.06012 3.26766 3.62489 3.68915 3.75227 4.08739 4.18209 4.22059 4.29190 4.41511 4.45419 4.62870 4.73130 4.76693 4.84972 4.97581 5.03399 5.10282 5.12218 5.14284 5.28866 5.32548 5.37784 5.43247 5.77637 6.01786 6.20396 6.28382 7.06356 7.83987 8.02583 9.17603 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.037673 B = 0.010526 C = 0.009606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.052993 B = 2659.334969 C = 2914.137561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.065 4.065 3 Si 0.948 3.052 4 H -0.283 1.283 5 H -0.293 1.293 6 H -0.256 1.256 7 C -0.222 4.222 8 H 0.058 0.942 9 N -0.750 5.750 10 C 0.167 3.833 11 H 0.043 0.957 12 C -0.120 4.120 13 C 0.067 3.933 14 N -0.520 5.520 15 C 0.033 3.967 16 C -0.113 4.113 17 C -0.114 4.114 18 C 0.058 3.942 19 H 0.022 0.978 20 C -0.100 4.100 21 H 0.257 0.743 22 H 0.361 0.639 23 H 0.078 0.922 24 H 0.042 0.958 25 H 0.009 0.991 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.027 0.973 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.236 -2.592 -2.224 19.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.256 4.256 3 Si 0.776 3.224 4 H -0.210 1.210 5 H -0.219 1.219 6 H -0.181 1.181 7 C -0.353 4.353 8 H 0.076 0.924 9 N -0.394 5.394 10 C 0.059 3.941 11 H 0.061 0.939 12 C -0.160 4.160 13 C -0.062 4.062 14 N -0.245 5.245 15 C -0.094 4.094 16 C -0.150 4.150 17 C -0.152 4.152 18 C -0.051 4.051 19 H 0.040 0.960 20 C -0.138 4.138 21 H 0.065 0.935 22 H 0.194 0.806 23 H 0.096 0.904 24 H 0.060 0.940 25 H 0.027 0.973 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.045 0.955 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 19.191 -3.222 -2.211 19.584 hybrid contribution -0.884 1.982 -0.288 2.189 sum 18.307 -1.240 -2.499 18.518 Atomic orbital electron populations 1.69877 1.06937 1.26435 1.60303 1.25413 0.96033 1.00829 1.03294 0.85512 0.78660 0.80445 0.77808 1.20982 1.21935 1.18133 1.19070 0.82733 0.93343 1.40165 0.92383 1.42917 1.02310 1.03889 1.90269 1.20578 0.92009 0.87018 0.94477 0.93857 1.22008 0.97930 0.99059 0.96973 1.21809 0.88714 0.97769 0.97862 1.63970 1.08019 1.48708 1.03820 1.22976 0.93079 0.95401 0.97986 1.22684 0.97238 1.02575 0.92552 1.22361 0.92501 1.02467 0.97877 1.22416 0.96913 0.94666 0.91081 0.96048 1.21701 0.93995 1.00476 0.97666 0.93451 0.80571 0.90370 0.93953 0.97279 0.90231 0.89013 0.95503 0.89424 0.90458 0.90827 0.89635 0.91592 0.88782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.21 13.97 21.65 0.30 -63.91 16 2 C -0.06 -3.89 5.50 84.86 0.47 -3.42 16 3 Si 0.95 46.88 27.73 68.60 1.90 48.78 16 4 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 5 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 6 H -0.26 -11.59 6.52 99.48 0.65 -10.95 16 7 C -0.22 -12.87 10.39 84.03 0.87 -12.00 16 8 H 0.06 3.68 8.06 -2.91 -0.02 3.65 16 9 N -0.75 -35.74 4.48 -322.16 -1.44 -37.18 16 10 C 0.17 6.48 3.05 45.15 0.14 6.62 16 11 H 0.04 1.77 8.08 -2.38 -0.02 1.75 16 12 C -0.12 -4.26 5.66 30.74 0.17 -4.09 16 13 C 0.07 2.21 5.74 86.75 0.50 2.71 16 14 N -0.52 -14.84 4.85 -864.16 -4.19 -19.03 16 15 C 0.03 0.78 6.71 87.02 0.58 1.36 16 16 C -0.11 -2.11 7.08 32.38 0.23 -1.88 16 17 C -0.11 -2.49 6.73 31.71 0.21 -2.27 16 18 C 0.06 1.70 2.36 44.40 0.10 1.80 16 19 H 0.02 0.76 6.36 -2.39 -0.02 0.74 16 20 C -0.10 -3.08 5.29 30.57 0.16 -2.92 16 21 H 0.26 15.97 8.31 -92.70 -0.77 15.20 16 22 H 0.36 16.86 4.03 -92.71 -0.37 16.49 16 23 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 24 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.01 0.35 7.79 -2.39 -0.02 0.33 16 26 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 28 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.08 1.66 8.00 -2.39 -0.02 1.64 16 33 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -66.67 262.31 0.64 -66.03 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.63 Total: 19.41 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: 3.44 Total: -14.10 kcal Atomic # 7 Polarization: -114.79 SS G_CDS: -5.33 Total: -120.13 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 1.90 Total: 48.78 kcal Total: -66.67 0.64 -66.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157950365.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.307 kcal (2) G-P(sol) polarization free energy of solvation -66.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds