Wall clock time and date at job start Mon Mar 30 2020 02:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86808 * 119.99734 * 2 1 4 4 H 1.48501 * 109.46837 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47017 * 299.99829 * 3 2 1 6 6 H 1.48500 * 109.47193 * 59.99901 * 3 2 1 7 7 C 1.38807 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00003 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00242 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00385 * 179.97438 * 9 7 2 11 11 H 1.08994 * 109.24857 * 325.54606 * 10 9 7 12 12 C 1.52824 * 109.24873 * 85.00130 * 10 9 7 13 13 C 1.53639 * 110.65118 * 174.12142 * 12 10 9 14 14 N 1.45536 * 107.85805 * 302.87131 * 13 12 10 15 15 C 1.46585 * 117.16893 * 185.50901 * 14 13 12 16 16 C 1.54801 * 105.83977 * 208.02270 * 15 14 13 17 17 C 1.55334 * 105.08025 * 3.71471 * 16 15 14 18 18 C 1.48648 * 109.71616 * 65.31324 * 14 13 12 19 19 H 1.09001 * 111.11374 * 52.54322 * 18 14 13 20 20 C 1.52369 * 107.34784 * 290.45860 * 18 14 13 21 21 H 0.97000 * 120.00134 * 0.02562 * 1 2 3 22 22 H 0.97006 * 119.99930 * 359.97438 * 9 7 2 23 23 H 1.09004 * 109.24187 * 53.82179 * 12 10 9 24 24 H 1.09000 * 109.21049 * 294.40445 * 12 10 9 25 25 H 1.08993 * 109.78410 * 183.27765 * 13 12 10 26 26 H 1.08998 * 109.82334 * 62.48319 * 13 12 10 27 27 H 1.09000 * 110.19333 * 88.94698 * 15 14 13 28 28 H 1.09006 * 110.22618 * 327.11688 * 15 14 13 29 29 H 1.09002 * 110.33686 * 244.78282 * 16 15 14 30 30 H 1.08996 * 110.33794 * 122.64598 * 16 15 14 31 31 H 1.08999 * 110.90685 * 140.34641 * 17 16 15 32 32 H 1.09004 * 110.90387 * 263.91571 * 17 16 15 33 33 H 1.09004 * 109.83037 * 182.35006 * 20 18 14 34 34 H 1.08990 * 109.83456 * 303.30414 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3966 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 1 2.9726 -3.5436 -0.5816 12 6 2.4189 -4.0301 1.4379 13 6 3.0593 -5.4257 1.4906 14 7 2.1220 -6.3695 0.9000 15 6 2.4773 -7.7905 0.9574 16 6 1.7939 -8.4467 -0.2667 17 6 1.1300 -7.2723 -1.0367 18 6 1.9440 -6.0626 -0.5435 19 1 2.9053 -6.0044 -1.0540 20 6 1.1828 -4.7461 -0.6376 21 1 -0.4850 0.8400 -0.0004 22 1 0.3556 -2.3881 0.0005 23 1 1.5154 -4.0263 2.0476 24 1 3.1221 -3.2971 1.8332 25 1 3.2575 -5.7017 2.5262 26 1 3.9904 -5.4268 0.9239 27 1 2.1030 -8.2349 1.8796 28 1 3.5588 -7.9114 0.8935 29 1 1.0381 -9.1613 0.0592 30 1 2.5352 -8.9405 -0.8949 31 1 1.2394 -7.4019 -2.1134 32 1 0.0795 -7.1726 -0.7634 33 1 0.9930 -4.5026 -1.6831 34 1 0.2390 -4.8253 -0.0983 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157950507.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:24 Heat of formation + Delta-G solvation = 9.007325 kcal Electronic energy + Delta-G solvation = -14306.323865 eV Core-core repulsion = 12045.713005 eV Total energy + Delta-G solvation = -2260.610860 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.58426 -35.61426 -33.03157 -31.83251 -29.99654 -28.22540 -26.42779 -23.46435 -22.36887 -20.89070 -20.31103 -19.33206 -17.05096 -15.64163 -15.37534 -14.71674 -14.59173 -13.69325 -13.52057 -13.26008 -12.63023 -12.51152 -12.31289 -11.94037 -11.31317 -11.18601 -10.93177 -10.81975 -10.78456 -10.53051 -10.44865 -10.11310 -10.10677 -9.66100 -9.51290 -8.83147 -8.05924 -6.89301 -5.71713 -2.99839 3.45791 3.51213 3.53542 4.19277 4.60644 4.72733 4.85890 5.03319 5.30667 5.45611 5.50906 5.53954 5.67002 5.71221 5.78830 5.81040 5.86342 5.99814 6.04083 6.13370 6.23374 6.31485 6.37904 6.54789 6.60386 6.75079 6.99264 7.17881 7.32142 7.55298 7.74605 8.47276 9.58204 10.17770 10.52873 11.51244 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.066822 B = 0.006984 C = 0.006623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.922109 B = 4008.275307 C = 4226.773577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.069 0.931 9 N -0.725 5.725 10 C 0.178 3.822 11 H 0.039 0.961 12 C -0.128 4.128 13 C 0.063 3.937 14 N -0.536 5.536 15 C 0.049 3.951 16 C -0.128 4.128 17 C -0.116 4.116 18 C 0.071 3.929 19 H 0.050 0.950 20 C -0.108 4.108 21 H 0.254 0.746 22 H 0.384 0.616 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.026 0.974 27 H 0.072 0.928 28 H 0.033 0.967 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.327 -15.263 -0.172 15.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.087 0.913 9 N -0.365 5.365 10 C 0.068 3.932 11 H 0.057 0.943 12 C -0.169 4.169 13 C -0.065 4.065 14 N -0.261 5.261 15 C -0.079 4.079 16 C -0.166 4.166 17 C -0.154 4.154 18 C -0.037 4.037 19 H 0.068 0.932 20 C -0.146 4.146 21 H 0.064 0.936 22 H 0.218 0.782 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.044 0.956 27 H 0.091 0.909 28 H 0.051 0.949 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.038 -15.031 0.127 15.565 hybrid contribution 1.010 0.845 -0.235 1.338 sum 5.048 -14.186 -0.108 15.058 Atomic orbital electron populations 1.69673 1.05085 1.25426 1.58037 1.24731 0.95495 0.97611 1.03271 0.86145 0.78759 0.84320 0.77163 1.20633 1.21920 1.21917 1.19302 0.90966 0.84240 1.42187 0.91273 1.42452 1.05813 0.99743 1.88525 1.20258 0.94132 0.86129 0.92644 0.94298 1.22325 1.00745 0.92793 1.01045 1.21987 0.92743 0.93430 0.98357 1.62860 1.47597 1.01426 1.14250 1.22526 0.97537 0.89198 0.98680 1.22619 0.99617 0.97956 0.96378 1.22384 1.00182 0.93897 0.98969 1.22553 0.97774 0.95418 0.87981 0.93224 1.21769 0.99393 0.92625 1.00838 0.93622 0.78240 0.91728 0.92041 0.91758 0.95607 0.90923 0.94881 0.91312 0.91909 0.91379 0.90545 0.91729 0.91101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.70 13.06 55.49 0.72 -27.98 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 3 Si 0.90 22.71 29.55 -169.99 -5.02 17.69 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 7 C -0.24 -6.67 9.92 -15.06 -0.15 -6.82 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -18.71 5.10 -53.20 -0.27 -18.98 16 10 C 0.18 3.71 2.82 -67.69 -0.19 3.51 16 11 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 12 C -0.13 -2.44 5.62 -26.49 -0.15 -2.59 16 13 C 0.06 0.99 5.85 -4.23 -0.02 0.97 16 14 N -0.54 -8.06 4.66 -224.86 -1.05 -9.11 16 15 C 0.05 0.59 6.87 -3.05 -0.02 0.57 16 16 C -0.13 -1.36 6.98 -24.54 -0.17 -1.53 16 17 C -0.12 -1.42 6.61 -25.01 -0.17 -1.58 16 18 C 0.07 1.06 2.63 -66.59 -0.18 0.88 16 19 H 0.05 0.75 8.06 -51.93 -0.42 0.33 16 20 C -0.11 -1.90 5.14 -26.72 -0.14 -2.04 16 21 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 22 H 0.38 10.54 7.80 -40.82 -0.32 10.22 16 23 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 24 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.03 0.39 8.05 -51.93 -0.42 -0.02 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.03 0.39 8.05 -51.93 -0.42 -0.03 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 269.17 15.07 4.06 4.06 Total: -1.00 -30.16 269.17 -8.60 -38.76 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -5.76 Total: 4.74 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -1.28 Total: -9.18 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: -0.59 Total: -56.06 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.16 -8.60 -38.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157950507.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.767 kcal (2) G-P(sol) polarization free energy of solvation -30.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds