Wall clock time and date at job start Mon Mar 30 2020 02:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86808 * 119.99734 * 2 1 4 4 H 1.48501 * 109.46837 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47017 * 299.99829 * 3 2 1 6 6 H 1.48500 * 109.47193 * 59.99901 * 3 2 1 7 7 C 1.38807 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00003 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00242 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00385 * 179.97438 * 9 7 2 11 11 H 1.08994 * 109.24857 * 325.54606 * 10 9 7 12 12 C 1.52824 * 109.24873 * 85.00130 * 10 9 7 13 13 C 1.53639 * 110.65118 * 174.12142 * 12 10 9 14 14 N 1.45536 * 107.85805 * 302.87131 * 13 12 10 15 15 C 1.46585 * 117.16893 * 185.50901 * 14 13 12 16 16 C 1.54801 * 105.83977 * 208.02270 * 15 14 13 17 17 C 1.55334 * 105.08025 * 3.71471 * 16 15 14 18 18 C 1.48648 * 109.71616 * 65.31324 * 14 13 12 19 19 H 1.09001 * 111.11374 * 52.54322 * 18 14 13 20 20 C 1.52369 * 107.34784 * 290.45860 * 18 14 13 21 21 H 0.97000 * 120.00134 * 0.02562 * 1 2 3 22 22 H 0.97006 * 119.99930 * 359.97438 * 9 7 2 23 23 H 1.09004 * 109.24187 * 53.82179 * 12 10 9 24 24 H 1.09000 * 109.21049 * 294.40445 * 12 10 9 25 25 H 1.08993 * 109.78410 * 183.27765 * 13 12 10 26 26 H 1.08998 * 109.82334 * 62.48319 * 13 12 10 27 27 H 1.09000 * 110.19333 * 88.94698 * 15 14 13 28 28 H 1.09006 * 110.22618 * 327.11688 * 15 14 13 29 29 H 1.09002 * 110.33686 * 244.78282 * 16 15 14 30 30 H 1.08996 * 110.33794 * 122.64598 * 16 15 14 31 31 H 1.08999 * 110.90685 * 140.34641 * 17 16 15 32 32 H 1.09004 * 110.90387 * 263.91571 * 17 16 15 33 33 H 1.09004 * 109.83037 * 182.35006 * 20 18 14 34 34 H 1.08990 * 109.83456 * 303.30414 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3966 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 1 2.9726 -3.5436 -0.5816 12 6 2.4189 -4.0301 1.4379 13 6 3.0593 -5.4257 1.4906 14 7 2.1220 -6.3695 0.9000 15 6 2.4773 -7.7905 0.9574 16 6 1.7939 -8.4467 -0.2667 17 6 1.1300 -7.2723 -1.0367 18 6 1.9440 -6.0626 -0.5435 19 1 2.9053 -6.0044 -1.0540 20 6 1.1828 -4.7461 -0.6376 21 1 -0.4850 0.8400 -0.0004 22 1 0.3556 -2.3881 0.0005 23 1 1.5154 -4.0263 2.0476 24 1 3.1221 -3.2971 1.8332 25 1 3.2575 -5.7017 2.5262 26 1 3.9904 -5.4268 0.9239 27 1 2.1030 -8.2349 1.8796 28 1 3.5588 -7.9114 0.8935 29 1 1.0381 -9.1613 0.0592 30 1 2.5352 -8.9405 -0.8949 31 1 1.2394 -7.4019 -2.1134 32 1 0.0795 -7.1726 -0.7634 33 1 0.9930 -4.5026 -1.6831 34 1 0.2390 -4.8253 -0.0983 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157950507.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:24 Heat of formation + Delta-G solvation = -11.162023 kcal Electronic energy + Delta-G solvation = -14307.198474 eV Core-core repulsion = 12045.713005 eV Total energy + Delta-G solvation = -2261.485469 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.80444 -37.25099 -34.72768 -33.32061 -31.67870 -29.59734 -27.83769 -25.41721 -23.76313 -22.03435 -21.52331 -20.81395 -19.13991 -16.89201 -16.66191 -16.37237 -15.91752 -15.39099 -15.30668 -14.63696 -14.18513 -13.86772 -13.50000 -13.20471 -13.07713 -12.87002 -12.39543 -12.22431 -12.12068 -12.07465 -11.95379 -11.74667 -11.52968 -11.38375 -11.13717 -10.86209 -9.20702 -9.00419 -7.94316 -5.23080 1.46214 1.47345 1.57290 2.55637 3.06174 3.38328 3.63143 3.77521 3.97892 4.09700 4.13289 4.30257 4.40117 4.41785 4.56101 4.58477 4.70037 4.79217 4.86533 4.97314 4.99877 5.06325 5.11461 5.15734 5.31333 5.37372 5.45348 5.48914 5.60192 6.10510 6.27880 6.40720 7.33404 8.09864 8.34101 9.29708 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.066822 B = 0.006984 C = 0.006623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.922109 B = 4008.275307 C = 4226.773577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.973 3.027 4 H -0.267 1.267 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.239 4.239 8 H 0.073 0.927 9 N -0.738 5.738 10 C 0.173 3.827 11 H 0.032 0.968 12 C -0.119 4.119 13 C 0.074 3.926 14 N -0.552 5.552 15 C 0.046 3.954 16 C -0.120 4.120 17 C -0.114 4.114 18 C 0.072 3.928 19 H 0.052 0.948 20 C -0.098 4.098 21 H 0.251 0.749 22 H 0.372 0.628 23 H 0.045 0.955 24 H 0.046 0.954 25 H 0.080 0.920 26 H 0.033 0.967 27 H 0.081 0.919 28 H 0.042 0.958 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.586 -16.913 -0.325 17.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.802 3.198 4 H -0.191 1.191 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.370 4.370 8 H 0.091 0.909 9 N -0.378 5.378 10 C 0.065 3.935 11 H 0.050 0.950 12 C -0.160 4.160 13 C -0.055 4.055 14 N -0.277 5.277 15 C -0.081 4.081 16 C -0.158 4.158 17 C -0.152 4.152 18 C -0.036 4.036 19 H 0.070 0.930 20 C -0.136 4.136 21 H 0.060 0.940 22 H 0.203 0.797 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.099 0.901 26 H 0.051 0.949 27 H 0.099 0.901 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.336 -16.730 -0.023 17.561 hybrid contribution 0.624 1.301 -0.180 1.454 sum 5.960 -15.430 -0.203 16.542 Atomic orbital electron populations 1.69832 1.06655 1.25947 1.59811 1.25564 0.96384 1.01074 1.03934 0.85079 0.78185 0.79848 0.76703 1.19093 1.21925 1.22049 1.19661 0.91315 0.85357 1.40707 0.90893 1.42669 1.05406 1.01004 1.88677 1.20500 0.93949 0.85191 0.93893 0.94962 1.22117 0.99752 0.95106 0.98998 1.21817 0.92637 0.91386 0.99672 1.62808 1.47818 1.03005 1.14118 1.22643 0.98423 0.87113 0.99953 1.22616 1.00198 0.97364 0.95598 1.22378 0.99439 0.93144 1.00204 1.22505 0.97871 0.94744 0.88468 0.92966 1.21627 0.98612 0.93472 0.99932 0.94034 0.79675 0.93635 0.93510 0.90136 0.94856 0.90102 0.93922 0.89862 0.90096 0.89757 0.91207 0.92108 0.92326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.04 13.06 21.65 0.28 -60.75 16 2 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 3 Si 0.97 47.11 29.55 68.60 2.03 49.14 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 7 C -0.24 -13.68 9.92 84.03 0.83 -12.85 16 8 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 9 N -0.74 -39.05 5.10 -322.23 -1.64 -40.69 16 10 C 0.17 7.26 2.82 45.15 0.13 7.39 16 11 H 0.03 1.39 8.07 -2.39 -0.02 1.37 16 12 C -0.12 -4.56 5.62 30.75 0.17 -4.38 16 13 C 0.07 2.19 5.85 86.78 0.51 2.70 16 14 N -0.55 -15.46 4.66 -865.32 -4.03 -19.49 16 15 C 0.05 0.97 6.87 86.98 0.60 1.57 16 16 C -0.12 -2.10 6.98 32.01 0.22 -1.88 16 17 C -0.11 -2.47 6.61 31.71 0.21 -2.26 16 18 C 0.07 2.03 2.63 44.68 0.12 2.14 16 19 H 0.05 1.45 8.06 -2.39 -0.02 1.43 16 20 C -0.10 -3.46 5.14 30.60 0.16 -3.30 16 21 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 22 H 0.37 21.15 7.80 -92.70 -0.72 20.42 16 23 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 24 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.03 0.95 8.05 -2.39 -0.02 0.93 16 27 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.04 0.83 8.05 -2.38 -0.02 0.82 16 29 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.07 1.62 8.10 -2.39 -0.02 1.60 16 33 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 34 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -64.70 269.17 0.38 -64.32 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.33 Total: 22.45 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: 3.41 Total: -14.98 kcal Atomic # 7 Polarization: -115.54 SS G_CDS: -5.39 Total: -120.93 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -64.70 0.38 -64.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157950507.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.156 kcal (2) G-P(sol) polarization free energy of solvation -64.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds