Wall clock time and date at job start Mon Mar 30 2020 02:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.47200 * 239.72287 * 3 2 1 5 5 H 1.48498 * 109.46671 * 359.72211 * 3 2 1 6 6 H 1.48499 * 109.47156 * 119.72301 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47066 * 179.97438 * 9 7 2 11 11 C 1.46898 * 110.99849 * 179.97438 * 10 9 7 12 12 H 1.08994 * 109.63056 * 325.00221 * 11 10 9 13 13 C 1.53153 * 109.63124 * 85.39759 * 11 10 9 14 14 C 1.53428 * 109.86224 * 65.88222 * 13 11 10 15 15 N 1.47675 * 109.38121 * 55.10486 * 14 13 11 16 16 C 1.48235 * 108.91513 * 47.08144 * 15 14 13 17 17 C 1.54058 * 106.70036 * 271.83066 * 16 15 14 18 18 C 1.54017 * 109.63175 * 204.60632 * 11 10 9 19 19 H 1.08993 * 113.03004 * 69.08967 * 18 11 10 20 20 C 1.48805 * 108.08183 * 293.31415 * 15 14 13 21 21 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 22 22 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 23 23 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 24 24 H 1.00899 * 111.00084 * 56.04522 * 10 9 7 25 25 H 1.09001 * 109.36610 * 185.89588 * 13 11 10 26 26 H 1.09003 * 109.36745 * 305.51003 * 13 11 10 27 27 H 1.08998 * 109.45513 * 295.12903 * 14 13 11 28 28 H 1.09005 * 109.44630 * 175.07538 * 14 13 11 29 29 H 1.09000 * 110.01589 * 152.51833 * 16 15 14 30 30 H 1.09001 * 110.05001 * 31.16053 * 16 15 14 31 31 H 1.08996 * 110.38433 * 240.16666 * 17 16 15 32 32 H 1.09005 * 110.47496 * 117.84978 * 17 16 15 33 33 H 1.08995 * 110.93240 * 315.33188 * 20 15 14 34 34 H 1.09002 * 110.92924 * 191.65871 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1081 1.6935 -1.2091 5 1 1.2842 2.7464 -0.0068 6 1 3.0979 1.6993 1.2159 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 7 2.2057 -3.6157 0.0164 11 6 1.5053 -4.9070 0.0227 12 1 0.5917 -4.8252 0.6114 13 6 1.1578 -5.3108 -1.4132 14 6 2.4441 -5.5798 -2.2049 15 7 3.2543 -6.5900 -1.4950 16 6 2.3775 -7.7180 -1.0998 17 6 1.7927 -7.3618 0.2802 18 6 2.4182 -5.9878 0.6315 19 1 2.5851 -5.8526 1.7000 20 6 3.7203 -5.9917 -0.2147 21 1 -0.4850 0.8401 -0.0041 22 1 0.6241 -2.5528 0.9015 23 1 0.6247 -2.5609 -0.8785 24 1 2.8405 -3.5453 0.7974 25 1 0.5482 -6.2143 -1.3971 26 1 0.5963 -4.5068 -1.8890 27 1 3.0140 -4.6552 -2.2966 28 1 2.1885 -5.9504 -3.1976 29 1 2.9595 -8.6371 -1.0324 30 1 1.5734 -7.8384 -1.8259 31 1 2.0804 -8.1097 1.0190 32 1 0.7070 -7.2815 0.2251 33 1 4.0871 -4.9771 -0.3697 34 1 4.4850 -6.6140 0.2503 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163199603.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:11 Heat of formation + Delta-G solvation = 7.564786 kcal Electronic energy + Delta-G solvation = -14530.142555 eV Core-core repulsion = 12269.469141 eV Total energy + Delta-G solvation = -2260.673413 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.52946 -35.03908 -32.54006 -31.51290 -29.91495 -28.87085 -26.08867 -23.38439 -22.57089 -21.53814 -20.18830 -18.44932 -16.67627 -15.81738 -15.80387 -14.65348 -14.26132 -14.11817 -13.32632 -12.90453 -12.80103 -12.20582 -12.01665 -11.90031 -11.59114 -11.30327 -10.99230 -10.93057 -10.80093 -10.61289 -10.46357 -10.34692 -10.02056 -9.71278 -9.16390 -8.50578 -8.20508 -7.30581 -6.04250 -4.06346 3.32807 3.36712 3.39815 4.31839 4.41815 4.76796 4.90904 5.11962 5.31582 5.32955 5.35119 5.49431 5.54874 5.61843 5.78959 5.86360 5.94857 6.01568 6.13979 6.19548 6.28677 6.41671 6.44808 6.51948 6.64852 7.13986 7.24248 7.28062 7.40529 7.77540 8.12368 8.38418 8.59609 9.02950 9.58703 11.06807 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.060156 B = 0.007269 C = 0.007152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.345843 B = 3851.306657 C = 3913.991308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.062 0.938 9 C 0.196 3.804 10 N -0.681 5.681 11 C 0.089 3.911 12 H 0.034 0.966 13 C -0.139 4.139 14 C 0.045 3.955 15 N -0.499 5.499 16 C 0.029 3.971 17 C -0.144 4.144 18 C -0.129 4.129 19 H 0.085 0.915 20 C 0.038 3.962 21 H 0.262 0.738 22 H -0.016 1.016 23 H 0.027 0.973 24 H 0.328 0.672 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.573 -12.989 -0.271 13.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.312 5.312 11 C -0.021 4.021 12 H 0.052 0.948 13 C -0.178 4.178 14 C -0.084 4.084 15 N -0.220 5.220 16 C -0.100 4.100 17 C -0.183 4.183 18 C -0.150 4.150 19 H 0.103 0.897 20 C -0.091 4.091 21 H 0.071 0.929 22 H 0.002 0.998 23 H 0.045 0.955 24 H 0.145 0.855 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.108 0.892 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.967 -13.032 -1.368 13.691 hybrid contribution -0.896 1.226 1.512 2.143 sum 3.070 -11.807 0.144 12.200 Atomic orbital electron populations 1.69956 1.06104 1.26890 1.50849 1.24993 0.94863 0.99366 0.95331 0.86545 0.79423 0.82682 0.78654 1.20137 1.21356 1.20283 1.21152 0.93459 0.90272 1.50436 0.92026 1.19568 0.90569 0.87359 0.95584 1.60761 1.20997 1.00854 1.48552 1.21683 0.95074 0.90424 0.94951 0.94839 1.22229 0.98380 1.00609 0.96596 1.22510 0.93649 0.96177 0.96020 1.66366 1.30466 1.06911 1.18225 1.23045 0.95993 0.95774 0.95213 1.22920 1.00658 0.96844 0.97892 1.23251 0.97308 0.94701 0.99691 0.89682 1.23490 0.95552 1.01076 0.88971 0.92870 0.99835 0.95482 0.85477 0.92623 0.91207 0.89164 0.91854 0.90982 0.91440 0.91906 0.91423 0.88340 0.91209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.51 -14.53 9.32 -34.44 -0.32 -14.85 16 8 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.20 5.10 5.24 -4.98 -0.03 5.07 16 10 N -0.68 -14.18 4.81 -107.35 -0.52 -14.69 16 11 C 0.09 1.58 2.39 -67.10 -0.16 1.42 16 12 H 0.03 0.65 7.81 -51.93 -0.41 0.24 16 13 C -0.14 -2.31 5.16 -26.43 -0.14 -2.45 16 14 C 0.04 0.71 5.69 -3.18 -0.02 0.69 16 15 N -0.50 -7.34 6.07 -228.71 -1.39 -8.73 16 16 C 0.03 0.36 6.20 -2.53 -0.02 0.34 16 17 C -0.14 -1.80 5.90 -25.13 -0.15 -1.94 16 18 C -0.13 -1.87 3.79 -87.82 -0.33 -2.20 16 19 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 20 C 0.04 0.54 6.31 -1.55 -0.01 0.53 16 21 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 22 H -0.02 -0.45 8.06 -51.93 -0.42 -0.87 16 23 H 0.03 0.76 7.39 -51.93 -0.38 0.38 16 24 H 0.33 6.60 8.11 -39.29 -0.32 6.28 16 25 H 0.06 0.83 5.39 -51.93 -0.28 0.55 16 26 H 0.07 1.31 7.38 -51.93 -0.38 0.93 16 27 H 0.09 1.62 7.68 -51.93 -0.40 1.22 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.82 6.94 -51.93 -0.36 0.46 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.85 6.94 -51.93 -0.36 0.49 16 33 H 0.10 1.59 6.57 -51.93 -0.34 1.25 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 259.60 15.07 3.91 3.91 Total: -1.00 -29.17 259.60 -8.85 -38.02 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -5.31 Total: 2.87 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: -1.27 Total: -11.88 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: -1.17 Total: -49.65 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.17 -8.85 -38.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163199603.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.587 kcal (2) G-P(sol) polarization free energy of solvation -29.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds