Wall clock time and date at job start Mon Mar 30 2020 02:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.47200 * 239.72287 * 3 2 1 5 5 H 1.48498 * 109.46671 * 359.72211 * 3 2 1 6 6 H 1.48499 * 109.47156 * 119.72301 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47066 * 179.97438 * 9 7 2 11 11 C 1.46898 * 110.99849 * 179.97438 * 10 9 7 12 12 H 1.08994 * 109.63056 * 325.00221 * 11 10 9 13 13 C 1.53153 * 109.63124 * 85.39759 * 11 10 9 14 14 C 1.53428 * 109.86224 * 65.88222 * 13 11 10 15 15 N 1.47675 * 109.38121 * 55.10486 * 14 13 11 16 16 C 1.48235 * 108.91513 * 47.08144 * 15 14 13 17 17 C 1.54058 * 106.70036 * 271.83066 * 16 15 14 18 18 C 1.54017 * 109.63175 * 204.60632 * 11 10 9 19 19 H 1.08993 * 113.03004 * 69.08967 * 18 11 10 20 20 C 1.48805 * 108.08183 * 293.31415 * 15 14 13 21 21 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 22 22 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 23 23 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 24 24 H 1.00899 * 111.00084 * 56.04522 * 10 9 7 25 25 H 1.09001 * 109.36610 * 185.89588 * 13 11 10 26 26 H 1.09003 * 109.36745 * 305.51003 * 13 11 10 27 27 H 1.08998 * 109.45513 * 295.12903 * 14 13 11 28 28 H 1.09005 * 109.44630 * 175.07538 * 14 13 11 29 29 H 1.09000 * 110.01589 * 152.51833 * 16 15 14 30 30 H 1.09001 * 110.05001 * 31.16053 * 16 15 14 31 31 H 1.08996 * 110.38433 * 240.16666 * 17 16 15 32 32 H 1.09005 * 110.47496 * 117.84978 * 17 16 15 33 33 H 1.08995 * 110.93240 * 315.33188 * 20 15 14 34 34 H 1.09002 * 110.92924 * 191.65871 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1081 1.6935 -1.2091 5 1 1.2842 2.7464 -0.0068 6 1 3.0979 1.6993 1.2159 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 7 2.2057 -3.6157 0.0164 11 6 1.5053 -4.9070 0.0227 12 1 0.5917 -4.8252 0.6114 13 6 1.1578 -5.3108 -1.4132 14 6 2.4441 -5.5798 -2.2049 15 7 3.2543 -6.5900 -1.4950 16 6 2.3775 -7.7180 -1.0998 17 6 1.7927 -7.3618 0.2802 18 6 2.4182 -5.9878 0.6315 19 1 2.5851 -5.8526 1.7000 20 6 3.7203 -5.9917 -0.2147 21 1 -0.4850 0.8401 -0.0041 22 1 0.6241 -2.5528 0.9015 23 1 0.6247 -2.5609 -0.8785 24 1 2.8405 -3.5453 0.7974 25 1 0.5482 -6.2143 -1.3971 26 1 0.5963 -4.5068 -1.8890 27 1 3.0140 -4.6552 -2.2966 28 1 2.1885 -5.9504 -3.1976 29 1 2.9595 -8.6371 -1.0324 30 1 1.5734 -7.8384 -1.8259 31 1 2.0804 -8.1097 1.0190 32 1 0.7070 -7.2815 0.2251 33 1 4.0871 -4.9771 -0.3697 34 1 4.4850 -6.6140 0.2503 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163199603.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:10 Heat of formation + Delta-G solvation = -13.838684 kcal Electronic energy + Delta-G solvation = -14531.070679 eV Core-core repulsion = 12269.469141 eV Total energy + Delta-G solvation = -2261.601537 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.76392 -36.78333 -34.58399 -32.71465 -31.51582 -30.06331 -28.01399 -24.78840 -24.15361 -23.17853 -21.33174 -19.85669 -18.60071 -17.31369 -17.10452 -16.61918 -15.68713 -15.45096 -15.03029 -14.50158 -14.17818 -13.75580 -13.50568 -13.36974 -13.06931 -12.99340 -12.63403 -12.61685 -12.14739 -12.03671 -11.92256 -11.69201 -11.60087 -11.23388 -11.07297 -10.68038 -9.43740 -9.09619 -8.24564 -6.36054 1.39606 1.43250 1.51269 2.38253 3.08745 3.16685 3.43716 3.73294 3.80771 4.06491 4.14520 4.23166 4.31473 4.45341 4.54002 4.69898 4.79807 4.86650 4.94004 4.99985 5.04658 5.12735 5.16546 5.21624 5.21921 5.27612 5.37381 5.60238 5.97030 6.00672 6.09774 6.43888 6.70712 6.87643 7.35272 8.86939 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.060156 B = 0.007269 C = 0.007152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.345843 B = 3851.306657 C = 3913.991308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.001 3.999 3 Si 0.974 3.026 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.536 4.536 8 H 0.065 0.935 9 C 0.214 3.786 10 N -0.673 5.673 11 C 0.084 3.916 12 H 0.013 0.987 13 C -0.134 4.134 14 C 0.052 3.948 15 N -0.503 5.503 16 C 0.028 3.972 17 C -0.137 4.137 18 C -0.124 4.124 19 H 0.094 0.906 20 C 0.039 3.961 21 H 0.265 0.735 22 H -0.046 1.046 23 H -0.003 1.003 24 H 0.334 0.666 25 H 0.079 0.921 26 H 0.038 0.962 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.908 -14.120 -0.031 14.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.798 3.202 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.574 4.574 8 H 0.084 0.916 9 C 0.086 3.914 10 N -0.304 5.304 11 C -0.026 4.026 12 H 0.031 0.969 13 C -0.174 4.174 14 C -0.077 4.077 15 N -0.223 5.223 16 C -0.101 4.101 17 C -0.176 4.176 18 C -0.144 4.144 19 H 0.113 0.887 20 C -0.089 4.089 21 H 0.074 0.926 22 H -0.029 1.029 23 H 0.015 0.985 24 H 0.151 0.849 25 H 0.097 0.903 26 H 0.057 0.943 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.111 0.889 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.316 -14.192 -1.125 15.197 hybrid contribution -1.338 1.511 1.437 2.478 sum 3.978 -12.681 0.312 13.294 Atomic orbital electron populations 1.70094 1.07894 1.28061 1.51536 1.25976 0.95765 1.03466 0.94544 0.85375 0.78093 0.77564 0.79203 1.19307 1.20821 1.19006 1.21527 0.93827 0.91406 1.50616 0.91639 1.19163 0.90544 0.89024 0.92646 1.60643 1.19998 1.00962 1.48759 1.21822 0.94931 0.89995 0.95841 0.96876 1.22201 0.99037 1.00418 0.95726 1.22385 0.92682 0.95723 0.96877 1.66403 1.30659 1.06919 1.18355 1.23155 0.96204 0.95491 0.95224 1.22896 1.00382 0.95790 0.98569 1.23237 0.96648 0.94523 0.99985 0.88742 1.23481 0.95916 1.00503 0.89017 0.92638 1.02887 0.98534 0.84884 0.90302 0.94341 0.91878 0.90363 0.88866 0.90850 0.89405 0.91624 0.90493 0.88862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.43 13.29 21.45 0.28 -57.14 16 2 C 0.00 0.03 5.46 84.66 0.46 0.50 16 3 Si 0.97 44.69 29.54 68.60 2.03 46.72 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.54 -30.90 9.32 25.60 0.24 -30.66 16 8 H 0.07 3.64 7.81 -2.91 -0.02 3.62 16 9 C 0.21 11.68 5.24 85.55 0.45 12.12 16 10 N -0.67 -28.86 4.81 -493.55 -2.38 -31.24 16 11 C 0.08 3.02 2.39 45.31 0.11 3.13 16 12 H 0.01 0.53 7.81 -2.39 -0.02 0.51 16 13 C -0.13 -4.51 5.16 30.79 0.16 -4.35 16 14 C 0.05 1.62 5.69 86.30 0.49 2.11 16 15 N -0.50 -13.68 6.07 -877.50 -5.32 -19.00 16 16 C 0.03 0.60 6.20 86.40 0.54 1.13 16 17 C -0.14 -2.99 5.90 31.63 0.19 -2.80 16 18 C -0.12 -3.36 3.79 -8.98 -0.03 -3.39 16 19 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 20 C 0.04 1.06 6.31 86.72 0.55 1.61 16 21 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 22 H -0.05 -2.76 8.06 -2.39 -0.02 -2.78 16 23 H 0.00 -0.21 7.39 -2.39 -0.02 -0.22 16 24 H 0.33 13.62 8.11 -89.69 -0.73 12.89 16 25 H 0.08 2.26 5.39 -2.39 -0.01 2.25 16 26 H 0.04 1.51 7.38 -2.39 -0.02 1.49 16 27 H 0.06 2.30 7.68 -2.39 -0.02 2.28 16 28 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 29 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.07 1.53 6.94 -2.39 -0.02 1.51 16 31 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.07 1.48 6.94 -2.38 -0.02 1.46 16 33 H 0.08 2.43 6.57 -2.39 -0.02 2.41 16 34 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -63.67 259.60 -1.89 -65.56 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.35 Total: 15.71 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: 3.14 Total: -20.61 kcal Atomic # 7 Polarization: -99.97 SS G_CDS: -7.41 Total: -107.39 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -63.67 -1.89 -65.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163199603.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.724 kcal (2) G-P(sol) polarization free energy of solvation -63.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds