Wall clock time and date at job start Mon Mar 30 2020 02:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.30994 * 120.00406 * 2 1 4 4 C 1.50709 * 119.99631 * 0.02562 * 3 2 1 5 5 N 1.46900 * 109.46833 * 125.00173 * 4 3 2 6 6 C 1.46901 * 110.99986 * 294.30446 * 5 4 3 7 7 C 1.53234 * 109.33965 * 172.74909 * 6 5 4 8 8 N 1.47078 * 108.52515 * 53.82749 * 7 6 5 9 9 C 1.36934 * 120.88753 * 128.79508 * 8 7 6 10 10 H 1.07992 * 120.00356 * 206.66105 * 9 8 7 11 11 C 1.38820 * 119.99606 * 26.65287 * 9 8 7 12 12 N 1.31618 * 119.99967 * 17.03750 * 11 9 8 13 13 Si 1.86799 * 119.99646 * 197.03880 * 11 9 8 14 14 H 1.48501 * 109.47694 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46974 * 120.00315 * 13 11 9 16 16 H 1.48505 * 109.46983 * 239.99795 * 13 11 9 17 17 C 1.47087 * 118.23535 * 308.81389 * 8 7 6 18 18 C 1.46900 * 111.00138 * 169.99841 * 5 4 3 19 19 H 1.09007 * 109.46804 * 300.00119 * 1 2 3 20 20 H 1.09003 * 109.47357 * 59.99748 * 1 2 3 21 21 H 1.09003 * 109.47568 * 179.97438 * 1 2 3 22 22 H 1.07995 * 119.99380 * 180.02562 * 2 1 3 23 23 H 1.07995 * 120.00705 * 180.02562 * 3 2 1 24 24 H 1.08996 * 109.46956 * 244.99851 * 4 3 2 25 25 H 1.08997 * 109.47314 * 5.00154 * 4 3 2 26 26 H 1.09004 * 109.48944 * 292.70324 * 6 5 4 27 27 H 1.08992 * 109.49461 * 52.78286 * 6 5 4 28 28 H 1.09002 * 109.62723 * 294.11386 * 7 6 5 29 29 H 1.09004 * 109.79240 * 173.63476 * 7 6 5 30 30 H 0.96998 * 119.99599 * 179.97438 * 12 11 9 31 31 H 1.09000 * 109.62851 * 291.47547 * 17 8 7 32 32 H 1.09000 * 109.78667 * 170.98765 * 17 8 7 33 33 H 1.08997 * 109.49325 * 307.21639 * 18 5 4 34 34 H 1.09003 * 109.48828 * 67.26482 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1344 0.0000 4 6 1.4085 2.4396 0.0006 5 7 1.8522 3.2605 1.1351 6 6 1.4844 2.6357 2.4127 7 6 2.1184 3.4235 3.5640 8 7 1.7349 4.8371 3.4299 9 6 1.1945 5.5220 4.4852 10 1 0.5402 6.3622 4.3056 11 6 1.4875 5.1362 5.7862 12 7 2.5192 4.3544 6.0242 13 14 0.4174 5.7267 7.1988 14 1 -0.6708 6.5874 6.6695 15 1 -0.1729 4.5557 7.8956 16 1 1.2450 6.5058 8.1546 17 6 1.9470 5.4955 2.1318 18 6 1.3197 4.6261 1.0369 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 2.0469 -0.9353 -0.0004 23 1 3.2420 1.1345 -0.0004 24 1 1.6026 2.9716 -0.9307 25 1 0.3403 2.2424 0.0905 26 1 0.3998 2.6419 2.5217 27 1 1.8464 1.6079 2.4325 28 1 3.2035 3.3323 3.5161 29 1 1.7602 3.0359 4.5178 30 1 2.7241 4.0852 6.9332 31 1 3.0156 5.6034 1.9462 32 1 1.4747 6.4778 2.1348 33 1 1.5623 5.0416 0.0589 34 1 0.2373 4.6044 1.1645 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216301059.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:58 Heat of formation + Delta-G solvation = 45.230803 kcal Electronic energy + Delta-G solvation = -14311.942533 eV Core-core repulsion = 12052.902441 eV Total energy + Delta-G solvation = -2259.040092 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.28702 -35.68584 -33.58056 -31.12274 -29.85515 -28.17483 -26.32653 -24.19028 -22.50327 -22.13777 -19.04166 -18.15595 -16.80710 -15.61832 -15.06854 -14.40383 -14.10014 -13.97428 -13.37306 -13.29249 -13.09338 -12.84219 -12.30028 -11.74187 -11.61371 -11.27948 -11.06511 -10.73433 -10.70443 -10.38611 -10.26717 -10.01352 -9.71827 -9.55272 -8.85247 -8.47367 -7.72848 -6.62401 -5.74699 -3.15664 2.35468 3.38865 3.46498 3.48865 4.50663 4.57456 5.07529 5.24242 5.42063 5.46519 5.50316 5.58512 5.69052 5.80105 5.94324 5.99292 6.00508 6.20611 6.21189 6.36705 6.40301 6.58928 6.75967 6.78306 6.92173 6.99446 7.30717 7.69322 7.71603 7.77181 7.87622 8.47168 9.24893 9.88533 10.47462 11.34107 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.044958 B = 0.007906 C = 0.007390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.654484 B = 3540.719067 C = 3787.799565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.175 4.175 3 C -0.136 4.136 4 C 0.074 3.926 5 N -0.530 5.530 6 C 0.038 3.962 7 C 0.178 3.822 8 N -0.596 5.596 9 C -0.250 4.250 10 H 0.066 0.934 11 C 0.000 4.000 12 N -0.903 5.903 13 Si 0.901 3.099 14 H -0.278 1.278 15 H -0.289 1.289 16 H -0.290 1.290 17 C 0.149 3.851 18 C 0.044 3.956 19 H 0.064 0.936 20 H 0.060 0.940 21 H 0.055 0.945 22 H 0.107 0.893 23 H 0.112 0.888 24 H 0.073 0.927 25 H 0.036 0.964 26 H 0.022 0.978 27 H 0.061 0.939 28 H 0.025 0.975 29 H 0.088 0.912 30 H 0.253 0.747 31 H 0.025 0.975 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.972 -5.721 -10.832 12.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.194 4.194 3 C -0.154 4.154 4 C -0.054 4.054 5 N -0.255 5.255 6 C -0.091 4.091 7 C 0.052 3.948 8 N -0.320 5.320 9 C -0.380 4.380 10 H 0.084 0.916 11 C -0.198 4.198 12 N -0.548 5.548 13 Si 0.731 3.269 14 H -0.203 1.203 15 H -0.216 1.216 16 H -0.217 1.217 17 C 0.022 3.978 18 C -0.085 4.085 19 H 0.083 0.917 20 H 0.079 0.921 21 H 0.074 0.926 22 H 0.125 0.875 23 H 0.130 0.870 24 H 0.091 0.909 25 H 0.054 0.946 26 H 0.040 0.960 27 H 0.080 0.920 28 H 0.043 0.957 29 H 0.106 0.894 30 H 0.063 0.937 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -2.420 -5.710 -10.670 12.341 hybrid contribution -1.278 0.124 0.798 1.511 sum -3.697 -5.586 -9.872 11.930 Atomic orbital electron populations 1.20837 0.93735 1.01618 1.01796 1.22744 0.96027 0.97765 1.02907 1.22796 1.00022 0.93668 0.98947 1.21277 0.96418 0.92628 0.95069 1.61943 1.59741 1.01987 1.01847 1.22859 0.97697 0.98035 0.90468 1.20864 0.96327 0.82939 0.94714 1.44137 1.73200 1.07004 1.07615 1.19242 1.20906 1.13099 0.84754 0.91633 1.25028 0.96841 1.00429 0.97539 1.70046 1.25931 1.39429 1.19388 0.86233 0.80084 0.77992 0.82541 1.20331 1.21613 1.21706 1.20970 0.97201 0.93866 0.85759 1.22621 0.96909 0.89522 0.99496 0.91725 0.92087 0.92590 0.87547 0.86996 0.90877 0.94569 0.96011 0.92014 0.95673 0.89427 0.93709 0.95698 0.92666 0.92108 0.95563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.41 8.65 36.01 0.31 -1.10 16 2 C -0.18 -2.18 10.26 -36.02 -0.37 -2.55 16 3 C -0.14 -1.89 8.50 -36.02 -0.31 -2.20 16 4 C 0.07 1.12 5.21 -4.97 -0.03 1.09 16 5 N -0.53 -9.93 4.62 -235.77 -1.09 -11.02 16 6 C 0.04 0.79 5.47 -3.70 -0.02 0.77 16 7 C 0.18 4.46 5.43 -3.61 -0.02 4.44 16 8 N -0.60 -15.62 3.04 -172.01 -0.52 -16.14 16 9 C -0.25 -7.06 9.63 -15.06 -0.15 -7.20 16 10 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 11 C 0.00 0.00 4.93 -17.43 -0.09 -0.09 16 12 N -0.90 -26.75 11.15 55.49 0.62 -26.13 16 13 Si 0.90 22.00 29.59 -169.99 -5.03 16.97 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 16 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 17 C 0.15 3.28 6.69 -3.60 -0.02 3.25 16 18 C 0.04 0.82 5.62 -3.70 -0.02 0.80 16 19 H 0.06 0.83 7.66 -51.93 -0.40 0.43 16 20 H 0.06 0.65 7.85 -51.93 -0.41 0.24 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 22 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 23 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 24 H 0.07 1.01 7.97 -51.93 -0.41 0.60 16 25 H 0.04 0.54 5.78 -51.93 -0.30 0.24 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 1.19 7.06 -51.93 -0.37 0.83 16 28 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.09 2.42 6.11 -51.93 -0.32 2.10 16 30 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.05 1.16 7.96 -51.93 -0.41 0.75 16 33 H 0.06 0.97 7.99 -51.93 -0.41 0.56 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 271.52 15.07 4.09 4.09 Total: -1.00 -29.91 271.52 -8.18 -38.09 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -5.54 Total: -3.08 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -0.71 Total: -2.78 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: -0.99 Total: -53.29 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.91 -8.18 -38.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216301059.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.317 kcal (2) G-P(sol) polarization free energy of solvation -29.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds