Wall clock time and date at job start Mon Mar 30 2020 03:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.49245 * 2 1 4 4 C 1.53052 * 109.48770 * 239.93736 * 2 1 3 5 5 N 1.46957 * 109.36394 * 298.43179 * 4 2 1 6 6 C 1.46957 * 110.87784 * 300.68100 * 5 4 2 7 7 H 1.09001 * 109.48919 * 299.34883 * 6 5 4 8 8 C 1.50704 * 109.50367 * 179.29771 * 6 5 4 9 9 H 1.08003 * 119.99995 * 240.04889 * 8 6 5 10 10 C 1.37877 * 120.00083 * 60.05383 * 8 6 5 11 11 N 1.31514 * 119.99976 * 0.02562 * 10 8 6 12 12 Si 1.86802 * 120.00003 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47028 * 90.00261 * 12 10 8 14 14 H 1.48501 * 109.47128 * 210.00086 * 12 10 8 15 15 H 1.48498 * 109.46946 * 329.99927 * 12 10 8 16 16 C 1.53052 * 109.36733 * 59.32100 * 6 5 4 17 17 N 1.46952 * 109.49227 * 120.04555 * 2 1 3 18 18 C 1.46902 * 111.00130 * 296.77672 * 17 2 1 19 19 C 1.52998 * 117.50244 * 261.29974 * 18 17 2 20 20 C 1.52996 * 60.00013 * 252.50827 * 19 18 17 21 21 H 1.09004 * 109.46740 * 299.00676 * 1 2 3 22 22 H 1.09002 * 109.46862 * 59.00760 * 1 2 3 23 23 H 1.09000 * 109.47184 * 179.00949 * 1 2 3 24 24 H 1.08999 * 109.49270 * 58.40101 * 4 2 1 25 25 H 1.09003 * 109.49197 * 178.44461 * 4 2 1 26 26 H 1.00900 * 110.99994 * 176.81250 * 5 4 2 27 27 H 0.97004 * 119.99986 * 179.97438 * 11 10 8 28 28 H 1.09004 * 109.48905 * 61.56149 * 16 6 5 29 29 H 1.08999 * 109.49079 * 181.60710 * 16 6 5 30 30 H 1.09007 * 115.54737 * 47.00491 * 18 17 2 31 31 H 1.09007 * 117.49511 * 359.97438 * 19 18 17 32 32 H 1.09000 * 117.50108 * 145.01778 * 19 18 17 33 33 H 1.09002 * 117.49406 * 252.50998 * 20 19 18 34 34 H 1.08999 * 117.50369 * 107.48481 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7228 -1.2487 5 7 1.5808 -2.1184 -1.2261 6 6 2.0712 -2.8120 -0.0269 7 1 3.1612 -2.8120 -0.0270 8 6 1.5684 -4.2327 -0.0264 9 1 0.9474 -4.5854 0.7838 10 6 1.9012 -5.0821 -1.0601 11 7 2.6578 -4.6527 -2.0464 12 14 1.2785 -6.8433 -1.0591 13 1 -0.0298 -6.9062 -1.7588 14 1 2.2565 -7.7145 -1.7590 15 1 1.1140 -7.3093 0.3412 16 6 1.5606 -2.0892 1.2219 17 7 2.0203 -0.6936 1.1991 18 6 1.6136 0.0145 2.4203 19 6 2.6421 0.9366 3.0781 20 6 2.2825 -0.3987 3.7327 21 1 -0.3633 0.4984 0.8988 22 1 -0.3633 0.5292 -0.8810 23 1 -0.3633 -1.0275 -0.0178 24 1 1.6544 -0.2271 -2.1394 25 1 3.1303 -0.6987 -1.2629 26 1 1.8603 -2.6048 -2.0648 27 1 2.8922 -5.2505 -2.7736 28 1 0.4709 -2.1129 1.2358 29 1 1.9465 -2.5851 2.1125 30 1 0.5670 0.3165 2.4621 31 1 3.6208 1.0174 2.6051 32 1 2.2724 1.8455 3.5528 33 1 1.6762 -0.3683 4.6380 34 1 3.0244 -1.1961 3.6901 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218965298.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:54 Heat of formation + Delta-G solvation = 33.507844 kcal Electronic energy + Delta-G solvation = -14649.245176 eV Core-core repulsion = 12389.696738 eV Total energy + Delta-G solvation = -2259.548438 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.93163 -36.03831 -33.35951 -31.31613 -30.62611 -27.21453 -24.63324 -24.11935 -22.24928 -21.11293 -20.23526 -17.73944 -16.71060 -15.96296 -15.11823 -14.55152 -14.23023 -13.76907 -13.28967 -13.10332 -12.80787 -12.07581 -11.94787 -11.74285 -11.28999 -11.15004 -10.94361 -10.83865 -10.50643 -10.39023 -10.20849 -9.92785 -9.64524 -9.35937 -9.01538 -8.56840 -7.65229 -6.80623 -6.08287 -4.10977 3.30848 3.37223 3.40299 4.10360 4.32434 4.47167 5.18013 5.21394 5.28064 5.47765 5.62770 5.73483 5.85321 5.86721 5.91931 6.06622 6.17218 6.28589 6.41827 6.44068 6.47582 6.55535 6.57051 6.72470 6.92924 7.05741 7.50045 7.75831 7.81325 7.93794 8.23633 8.68439 9.00812 9.14404 9.56767 11.02343 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.041210 B = 0.009377 C = 0.008401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.278124 B = 2985.417528 C = 3332.280063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.091 3.909 3 H 0.066 0.934 4 C 0.061 3.939 5 N -0.682 5.682 6 C 0.220 3.780 7 H 0.002 0.998 8 C -0.504 4.504 9 H 0.059 0.941 10 C 0.067 3.933 11 N -0.900 5.900 12 Si 0.899 3.101 13 H -0.280 1.280 14 H -0.287 1.287 15 H -0.275 1.275 16 C 0.071 3.929 17 N -0.510 5.510 18 C 0.007 3.993 19 C -0.170 4.170 20 C -0.172 4.172 21 H 0.038 0.962 22 H 0.050 0.950 23 H 0.078 0.922 24 H 0.056 0.944 25 H 0.019 0.981 26 H 0.362 0.638 27 H 0.263 0.737 28 H 0.033 0.967 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.714 8.529 5.564 10.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.017 4.017 3 H 0.084 0.916 4 C -0.070 4.070 5 N -0.320 5.320 6 C 0.112 3.888 7 H 0.020 0.980 8 C -0.544 4.544 9 H 0.077 0.923 10 C -0.134 4.134 11 N -0.540 5.540 12 Si 0.727 3.273 13 H -0.206 1.206 14 H -0.213 1.213 15 H -0.199 1.199 16 C -0.057 4.057 17 N -0.234 5.234 18 C -0.102 4.102 19 C -0.208 4.208 20 C -0.209 4.209 21 H 0.057 0.943 22 H 0.069 0.931 23 H 0.097 0.903 24 H 0.074 0.926 25 H 0.037 0.963 26 H 0.186 0.814 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.712 8.595 5.646 10.425 hybrid contribution -0.252 -0.992 -0.296 1.066 sum -1.964 7.602 5.350 9.501 Atomic orbital electron populations 1.22296 0.97579 1.03462 0.99852 1.21621 0.93088 0.96500 0.90533 0.91575 1.21861 0.96647 0.93496 0.95019 1.60980 1.62559 0.99754 1.08674 1.19027 0.93496 0.91153 0.85149 0.98003 1.21112 1.31618 0.94532 1.07089 0.92296 1.24973 0.94360 0.98723 0.95383 1.69681 1.37034 1.36374 1.10943 0.86491 0.78568 0.84168 0.78101 1.20610 1.21315 1.19949 1.22298 0.97697 0.85552 1.00106 1.62234 1.58592 1.03006 0.99550 1.22413 0.95030 1.02134 0.90653 1.22974 1.00760 0.93391 1.03654 1.22942 1.03840 0.98899 0.95254 0.94302 0.93125 0.90286 0.92553 0.96271 0.81377 0.92662 0.94892 0.92144 0.90057 0.88556 0.89505 0.89297 0.88347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.01 8.45 37.16 0.31 -2.70 16 2 C 0.09 1.69 2.97 -67.66 -0.20 1.49 16 3 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 4 C 0.06 1.25 6.15 -3.77 -0.02 1.23 16 5 N -0.68 -16.58 5.83 -107.81 -0.63 -17.21 16 6 C 0.22 5.64 2.55 -68.80 -0.18 5.47 16 7 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 8 C -0.50 -13.89 8.76 -34.44 -0.30 -14.19 16 9 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 10 C 0.07 1.84 5.35 -17.82 -0.10 1.75 16 11 N -0.90 -25.34 11.49 55.43 0.64 -24.70 16 12 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 16 C 0.07 1.56 4.40 -3.77 -0.02 1.54 16 17 N -0.51 -9.85 4.78 -218.57 -1.04 -10.90 16 18 C 0.01 0.11 4.74 -67.71 -0.32 -0.21 16 19 C -0.17 -2.32 10.46 -26.73 -0.28 -2.60 16 20 C -0.17 -2.45 9.92 -26.73 -0.27 -2.72 16 21 H 0.04 0.61 6.32 -51.93 -0.33 0.28 16 22 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.08 1.59 5.97 -51.93 -0.31 1.28 16 24 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.36 9.56 6.72 -39.29 -0.26 9.30 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.03 0.74 6.37 -51.93 -0.33 0.41 16 29 H 0.06 1.32 7.64 -51.93 -0.40 0.92 16 30 H 0.08 1.28 6.34 -51.93 -0.33 0.95 16 31 H 0.10 1.38 8.14 -51.92 -0.42 0.95 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.10 1.52 8.05 -51.93 -0.42 1.10 16 LS Contribution 265.30 15.07 4.00 4.00 Total: -1.00 -27.64 265.30 -8.72 -36.37 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -5.30 Total: 7.16 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: -1.36 Total: -10.95 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: -1.04 Total: -52.81 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -27.64 -8.72 -36.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218965298.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.875 kcal (2) G-P(sol) polarization free energy of solvation -27.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds