Wall clock time and date at job start Mon Mar 30 2020 03:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.49245 * 2 1 4 4 C 1.53052 * 109.48770 * 239.93736 * 2 1 3 5 5 N 1.46957 * 109.36394 * 298.43179 * 4 2 1 6 6 C 1.46957 * 110.87784 * 300.68100 * 5 4 2 7 7 H 1.09001 * 109.48919 * 299.34883 * 6 5 4 8 8 C 1.50704 * 109.50367 * 179.29771 * 6 5 4 9 9 H 1.08003 * 119.99995 * 240.04889 * 8 6 5 10 10 C 1.37877 * 120.00083 * 60.05383 * 8 6 5 11 11 N 1.31514 * 119.99976 * 0.02562 * 10 8 6 12 12 Si 1.86802 * 120.00003 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47028 * 90.00261 * 12 10 8 14 14 H 1.48501 * 109.47128 * 210.00086 * 12 10 8 15 15 H 1.48498 * 109.46946 * 329.99927 * 12 10 8 16 16 C 1.53052 * 109.36733 * 59.32100 * 6 5 4 17 17 N 1.46952 * 109.49227 * 120.04555 * 2 1 3 18 18 C 1.46902 * 111.00130 * 296.77672 * 17 2 1 19 19 C 1.52998 * 117.50244 * 261.29974 * 18 17 2 20 20 C 1.52996 * 60.00013 * 252.50827 * 19 18 17 21 21 H 1.09004 * 109.46740 * 299.00676 * 1 2 3 22 22 H 1.09002 * 109.46862 * 59.00760 * 1 2 3 23 23 H 1.09000 * 109.47184 * 179.00949 * 1 2 3 24 24 H 1.08999 * 109.49270 * 58.40101 * 4 2 1 25 25 H 1.09003 * 109.49197 * 178.44461 * 4 2 1 26 26 H 1.00900 * 110.99994 * 176.81250 * 5 4 2 27 27 H 0.97004 * 119.99986 * 179.97438 * 11 10 8 28 28 H 1.09004 * 109.48905 * 61.56149 * 16 6 5 29 29 H 1.08999 * 109.49079 * 181.60710 * 16 6 5 30 30 H 1.09007 * 115.54737 * 47.00491 * 18 17 2 31 31 H 1.09007 * 117.49511 * 359.97438 * 19 18 17 32 32 H 1.09000 * 117.50108 * 145.01778 * 19 18 17 33 33 H 1.09002 * 117.49406 * 252.50998 * 20 19 18 34 34 H 1.08999 * 117.50369 * 107.48481 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7228 -1.2487 5 7 1.5808 -2.1184 -1.2261 6 6 2.0712 -2.8120 -0.0269 7 1 3.1612 -2.8120 -0.0270 8 6 1.5684 -4.2327 -0.0264 9 1 0.9474 -4.5854 0.7838 10 6 1.9012 -5.0821 -1.0601 11 7 2.6578 -4.6527 -2.0464 12 14 1.2785 -6.8433 -1.0591 13 1 -0.0298 -6.9062 -1.7588 14 1 2.2565 -7.7145 -1.7590 15 1 1.1140 -7.3093 0.3412 16 6 1.5606 -2.0892 1.2219 17 7 2.0203 -0.6936 1.1991 18 6 1.6136 0.0145 2.4203 19 6 2.6421 0.9366 3.0781 20 6 2.2825 -0.3987 3.7327 21 1 -0.3633 0.4984 0.8988 22 1 -0.3633 0.5292 -0.8810 23 1 -0.3633 -1.0275 -0.0178 24 1 1.6544 -0.2271 -2.1394 25 1 3.1303 -0.6987 -1.2629 26 1 1.8603 -2.6048 -2.0648 27 1 2.8922 -5.2505 -2.7736 28 1 0.4709 -2.1129 1.2358 29 1 1.9465 -2.5851 2.1125 30 1 0.5670 0.3165 2.4621 31 1 3.6208 1.0174 2.6051 32 1 2.2724 1.8455 3.5528 33 1 1.6762 -0.3683 4.6380 34 1 3.0244 -1.1961 3.6901 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218965298.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:54 Heat of formation + Delta-G solvation = 14.369367 kcal Electronic energy + Delta-G solvation = -14650.075083 eV Core-core repulsion = 12389.696738 eV Total energy + Delta-G solvation = -2260.378345 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.47341 -37.47622 -35.21471 -33.09597 -32.40043 -28.90828 -26.51722 -25.76233 -23.59392 -22.60132 -21.72152 -19.37660 -18.61909 -17.63871 -16.75271 -16.29598 -15.78401 -15.20543 -15.14166 -14.86994 -14.35488 -13.76041 -13.54337 -13.38515 -12.82409 -12.73912 -12.64960 -12.34795 -12.31181 -12.00754 -11.74198 -11.33722 -11.24383 -11.07202 -10.78243 -10.63197 -9.17268 -8.76075 -8.18002 -6.29312 1.42669 1.43674 1.53828 2.41605 2.91796 3.00613 3.08790 3.95802 4.01522 4.10317 4.16029 4.30690 4.40893 4.45729 4.51154 4.73435 4.78975 4.81547 4.87143 4.90917 4.95949 5.05895 5.16619 5.20071 5.36191 5.39564 5.59076 5.76273 6.03330 6.29525 6.40476 6.62452 6.96328 7.10006 7.42538 8.91532 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.041210 B = 0.009377 C = 0.008401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.278124 B = 2985.417528 C = 3332.280063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.092 3.908 3 H 0.092 0.908 4 C 0.058 3.942 5 N -0.684 5.684 6 C 0.222 3.778 7 H -0.045 1.045 8 C -0.529 4.529 9 H 0.056 0.944 10 C 0.021 3.979 11 N -0.924 5.924 12 Si 0.965 3.035 13 H -0.275 1.275 14 H -0.283 1.283 15 H -0.269 1.269 16 C 0.088 3.912 17 N -0.522 5.522 18 C -0.017 4.017 19 C -0.147 4.147 20 C -0.170 4.170 21 H 0.059 0.941 22 H 0.066 0.934 23 H 0.046 0.954 24 H 0.078 0.922 25 H 0.001 0.999 26 H 0.347 0.653 27 H 0.266 0.734 28 H 0.027 0.973 29 H 0.054 0.946 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.646 9.664 6.506 11.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.016 4.016 3 H 0.110 0.890 4 C -0.073 4.073 5 N -0.319 5.319 6 C 0.114 3.886 7 H -0.027 1.027 8 C -0.568 4.568 9 H 0.074 0.926 10 C -0.178 4.178 11 N -0.564 5.564 12 Si 0.790 3.210 13 H -0.201 1.201 14 H -0.208 1.208 15 H -0.193 1.193 16 C -0.040 4.040 17 N -0.246 5.246 18 C -0.126 4.126 19 C -0.185 4.185 20 C -0.208 4.208 21 H 0.078 0.922 22 H 0.085 0.915 23 H 0.065 0.935 24 H 0.096 0.904 25 H 0.019 0.981 26 H 0.168 0.832 27 H 0.075 0.925 28 H 0.045 0.955 29 H 0.073 0.927 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.648 9.756 6.605 12.075 hybrid contribution 0.089 -1.288 -0.594 1.421 sum -2.559 8.468 6.011 10.695 Atomic orbital electron populations 1.22169 0.96398 1.01867 1.01697 1.21666 0.93969 0.97005 0.88992 0.89033 1.22023 0.95747 0.91873 0.97642 1.60959 1.62351 1.01251 1.07356 1.18896 0.90668 0.91645 0.87430 1.02724 1.21422 1.32014 0.96011 1.07371 0.92595 1.25763 0.94397 1.02755 0.94933 1.69802 1.37630 1.37666 1.11324 0.85456 0.78030 0.79202 0.78276 1.20074 1.20844 1.19339 1.21918 0.96857 0.87397 0.97796 1.62152 1.59069 1.01889 1.01465 1.22539 0.96314 1.03858 0.89843 1.23042 0.99417 0.94076 1.01958 1.23013 1.03427 0.98997 0.95345 0.92230 0.91510 0.93476 0.90369 0.98058 0.83206 0.92529 0.95521 0.92723 0.88990 0.89415 0.86350 0.86804 0.90179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.32 8.45 71.98 0.61 -4.71 16 2 C 0.09 3.27 2.97 44.92 0.13 3.40 16 3 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 4 C 0.06 2.38 6.15 86.31 0.53 2.91 16 5 N -0.68 -34.08 5.83 -494.99 -2.89 -36.96 16 6 C 0.22 11.82 2.55 44.18 0.11 11.93 16 7 H -0.04 -2.73 8.14 -2.39 -0.02 -2.75 16 8 C -0.53 -29.94 8.76 25.60 0.22 -29.71 16 9 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 10 C 0.02 1.15 5.35 84.65 0.45 1.60 16 11 N -0.92 -53.23 11.49 21.45 0.25 -52.98 16 12 Si 0.96 43.98 29.54 68.60 2.03 46.01 16 13 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 14 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 15 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 16 C 0.09 3.95 4.40 86.31 0.38 4.33 16 17 N -0.52 -19.80 4.78 -845.41 -4.04 -23.84 16 18 C -0.02 -0.51 4.74 44.91 0.21 -0.30 16 19 C -0.15 -3.55 10.46 30.59 0.32 -3.23 16 20 C -0.17 -4.49 9.92 30.59 0.30 -4.19 16 21 H 0.06 1.69 6.32 -2.38 -0.02 1.67 16 22 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 23 H 0.05 1.85 5.97 -2.39 -0.01 1.84 16 24 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 25 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 26 H 0.35 18.91 6.72 -89.69 -0.60 18.30 16 27 H 0.27 14.49 8.31 -92.70 -0.77 13.72 16 28 H 0.03 1.22 6.37 -2.38 -0.02 1.20 16 29 H 0.05 2.45 7.64 -2.39 -0.02 2.43 16 30 H 0.09 2.58 6.34 -2.38 -0.02 2.57 16 31 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 32 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.08 2.41 8.05 -2.39 -0.02 2.39 16 Total: -1.00 -60.64 265.30 -0.90 -61.54 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: 0.47 Total: 24.19 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: 3.28 Total: -17.96 kcal Atomic # 7 Polarization: -107.10 SS G_CDS: -6.68 Total: -113.79 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -60.64 -0.90 -61.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218965298.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.913 kcal (2) G-P(sol) polarization free energy of solvation -60.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds