Wall clock time and date at job start Mon Mar 30 2020 03:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.48536 * 2 1 4 4 C 1.53049 * 109.48808 * 120.04259 * 2 1 3 5 5 N 1.46956 * 109.37889 * 178.35646 * 4 2 1 6 6 C 1.46957 * 110.88202 * 300.71439 * 5 4 2 7 7 H 1.08997 * 109.47347 * 299.31758 * 6 5 4 8 8 C 1.50697 * 109.50519 * 179.27656 * 6 5 4 9 9 H 1.08008 * 120.00257 * 240.07572 * 8 6 5 10 10 C 1.37882 * 120.00580 * 60.07919 * 8 6 5 11 11 N 1.31520 * 119.99225 * 359.97438 * 10 8 6 12 12 Si 1.86788 * 120.00649 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47132 * 59.99740 * 12 10 8 14 14 H 1.48500 * 109.47731 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47240 * 300.00127 * 12 10 8 16 16 C 1.53046 * 109.38065 * 59.28891 * 6 5 4 17 17 N 1.46955 * 109.36741 * 301.60834 * 16 6 5 18 18 C 1.46896 * 111.00423 * 183.19025 * 17 16 6 19 19 C 1.52994 * 117.49993 * 119.82379 * 18 17 16 20 20 C 1.52997 * 117.49735 * 51.19940 * 18 17 16 21 21 H 1.09006 * 109.46757 * 299.95672 * 1 2 3 22 22 H 1.08997 * 109.46842 * 59.95157 * 1 2 3 23 23 H 1.09000 * 109.46825 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.49200 * 298.33797 * 4 2 1 25 25 H 1.09002 * 109.48985 * 58.38216 * 4 2 1 26 26 H 1.00901 * 110.99721 * 64.56588 * 5 4 2 27 27 H 0.96996 * 119.99719 * 179.97438 * 11 10 8 28 28 H 1.09002 * 109.48847 * 181.64070 * 16 6 5 29 29 H 1.09003 * 109.49229 * 61.57671 * 16 6 5 30 30 H 1.09002 * 115.54683 * 265.52889 * 18 17 16 31 31 H 1.09001 * 117.50167 * 359.97438 * 19 18 17 32 32 H 1.08998 * 117.50021 * 145.02479 * 19 18 17 33 33 H 1.09005 * 117.49475 * 214.98146 * 20 18 17 34 34 H 1.08994 * 117.50152 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7223 1.2490 5 7 3.5097 -0.7554 1.2268 6 6 3.9999 -1.4490 0.0276 7 1 3.6361 -2.4765 0.0277 8 6 5.5069 -1.4494 0.0273 9 1 6.0470 -0.9814 -0.7825 10 6 6.1965 -2.0474 1.0608 11 7 5.5388 -2.6169 2.0472 12 14 8.0643 -2.0485 1.0602 13 1 8.5602 -0.6487 1.0606 14 1 8.5595 -2.7489 2.2725 15 1 8.5585 -2.7483 -0.1528 16 6 3.4893 -0.7266 -1.2213 17 7 2.0203 -0.6940 -1.1990 18 6 1.4888 -0.0743 -2.4202 19 6 0.5729 -0.9245 -3.3028 20 6 1.9975 -0.6066 -3.7614 21 1 -0.3633 0.5132 0.8904 22 1 -0.3633 0.5146 -0.8895 23 1 -0.3633 -1.0277 -0.0005 24 1 1.7022 -0.1926 2.1394 25 1 1.6541 -1.7414 1.2632 26 1 3.8933 0.1758 1.2879 27 1 6.0238 -3.0379 2.7741 28 1 3.8278 -1.2564 -2.1118 29 1 3.8755 0.2926 -1.2354 30 1 1.2735 0.9920 -2.3509 31 1 0.3650 -1.9439 -2.9775 32 1 -0.2454 -0.4177 -3.8143 33 1 2.1164 0.1095 -4.5746 34 1 2.7268 -1.4162 -3.7376 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218965337.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:58 Heat of formation + Delta-G solvation = 34.981058 kcal Electronic energy + Delta-G solvation = -14557.298050 eV Core-core repulsion = 12297.813496 eV Total energy + Delta-G solvation = -2259.484555 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.96817 -36.04920 -33.32213 -31.35142 -31.08782 -27.25505 -24.29033 -23.88129 -22.14517 -20.94691 -20.22204 -19.20673 -16.69375 -15.76272 -14.78975 -14.61799 -14.27897 -13.81324 -13.49100 -13.01059 -12.69747 -12.13140 -11.96882 -11.56122 -11.44424 -11.27240 -10.86699 -10.75370 -10.70054 -10.41093 -10.25148 -10.12393 -9.85689 -9.51262 -8.91541 -8.37947 -7.74382 -6.75667 -5.84846 -3.99903 3.36568 3.41682 3.43540 4.06410 4.25857 4.52137 5.17736 5.23289 5.28817 5.39523 5.45326 5.60354 5.75674 5.83966 5.85615 5.98256 6.05808 6.18637 6.26883 6.30794 6.38872 6.46475 6.47330 6.51829 6.86800 6.89161 7.42170 7.73612 7.78876 7.95305 8.26497 8.63188 8.96951 9.15394 9.68668 11.19582 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.041225 B = 0.009300 C = 0.007953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.028534 B = 3010.050740 C = 3519.849178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.047 3.953 3 H 0.028 0.972 4 C 0.065 3.935 5 N -0.649 5.649 6 C 0.227 3.773 7 H 0.045 0.955 8 C -0.541 4.541 9 H 0.052 0.948 10 C 0.084 3.916 11 N -0.846 5.846 12 Si 0.884 3.116 13 H -0.279 1.279 14 H -0.288 1.288 15 H -0.278 1.278 16 C 0.033 3.967 17 N -0.504 5.504 18 C 0.013 3.987 19 C -0.168 4.168 20 C -0.181 4.181 21 H 0.052 0.948 22 H 0.047 0.953 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.317 0.683 27 H 0.256 0.744 28 H 0.067 0.933 29 H 0.017 0.983 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.370 4.887 -6.057 11.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.064 4.064 3 H 0.045 0.955 4 C -0.066 4.066 5 N -0.276 5.276 6 C 0.119 3.881 7 H 0.063 0.937 8 C -0.580 4.580 9 H 0.071 0.929 10 C -0.123 4.123 11 N -0.480 5.480 12 Si 0.712 3.288 13 H -0.204 1.204 14 H -0.213 1.213 15 H -0.204 1.204 16 C -0.096 4.096 17 N -0.229 5.229 18 C -0.097 4.097 19 C -0.206 4.206 20 C -0.219 4.219 21 H 0.071 0.929 22 H 0.066 0.934 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.134 0.866 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.036 0.964 30 H 0.097 0.903 31 H 0.116 0.884 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.458 3.713 -5.408 10.704 hybrid contribution 1.097 1.610 -0.788 2.101 sum -7.361 5.322 -6.196 10.996 Atomic orbital electron populations 1.21766 0.95145 1.02054 1.00513 1.22535 0.95142 0.95502 0.93209 0.95451 1.22139 0.91822 0.99724 0.92928 1.61071 1.02072 1.21039 1.43385 1.19164 0.93997 0.93670 0.81250 0.93680 1.20874 0.90179 1.38995 1.07949 0.92939 1.24946 0.97464 0.94548 0.95349 1.70107 1.34580 1.34038 1.09277 0.86829 0.86655 0.78076 0.77263 1.20435 1.21347 1.20398 1.23111 0.84101 0.99070 1.03327 1.62055 1.10144 1.51340 0.99333 1.22377 1.03695 0.94996 0.88607 1.23024 0.92815 1.01694 1.03059 1.23058 0.98057 1.03875 0.96895 0.92884 0.93425 0.92080 0.92421 0.91314 0.86622 0.93373 0.91486 0.96433 0.90251 0.88433 0.89596 0.89364 0.88182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.03 37.16 0.34 -1.65 16 2 C 0.05 0.83 2.49 -67.65 -0.17 0.66 16 3 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 4 C 0.07 1.30 6.00 -3.77 -0.02 1.28 16 5 N -0.65 -15.53 5.88 -107.82 -0.63 -16.17 16 6 C 0.23 5.74 2.45 -68.81 -0.17 5.57 16 7 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 8 C -0.54 -14.87 8.69 -34.44 -0.30 -15.17 16 9 H 0.05 1.42 7.74 -52.48 -0.41 1.02 16 10 C 0.08 2.34 5.39 -17.82 -0.10 2.25 16 11 N -0.85 -24.69 12.77 55.43 0.71 -23.98 16 12 Si 0.88 21.27 29.54 -169.99 -5.02 16.25 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 C 0.03 0.70 4.62 -3.77 -0.02 0.68 16 17 N -0.50 -9.47 4.69 -218.57 -1.02 -10.49 16 18 C 0.01 0.20 3.97 -67.72 -0.27 -0.07 16 19 C -0.17 -2.29 10.46 -26.73 -0.28 -2.57 16 20 C -0.18 -2.60 9.71 -26.73 -0.26 -2.86 16 21 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.05 0.65 7.00 -51.93 -0.36 0.28 16 23 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 26 H 0.32 7.49 8.79 -39.29 -0.35 7.14 16 27 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.07 1.44 6.54 -51.93 -0.34 1.10 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 1.22 7.87 -51.93 -0.41 0.81 16 31 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.10 1.56 6.96 -51.93 -0.36 1.20 16 LS Contribution 271.64 15.07 4.09 4.09 Total: -1.00 -28.51 271.64 -8.71 -37.22 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -5.59 Total: 4.96 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -1.24 Total: -11.88 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: -0.95 Total: -50.64 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.51 -8.71 -37.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218965337.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.202 kcal (2) G-P(sol) polarization free energy of solvation -28.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds