Wall clock time and date at job start Mon Mar 30 2020 03:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.48536 * 2 1 4 4 C 1.53049 * 109.48808 * 120.04259 * 2 1 3 5 5 N 1.46956 * 109.37889 * 178.35646 * 4 2 1 6 6 C 1.46957 * 110.88202 * 300.71439 * 5 4 2 7 7 H 1.08997 * 109.47347 * 299.31758 * 6 5 4 8 8 C 1.50697 * 109.50519 * 179.27656 * 6 5 4 9 9 H 1.08008 * 120.00257 * 240.07572 * 8 6 5 10 10 C 1.37882 * 120.00580 * 60.07919 * 8 6 5 11 11 N 1.31520 * 119.99225 * 359.97438 * 10 8 6 12 12 Si 1.86788 * 120.00649 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47132 * 59.99740 * 12 10 8 14 14 H 1.48500 * 109.47731 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47240 * 300.00127 * 12 10 8 16 16 C 1.53046 * 109.38065 * 59.28891 * 6 5 4 17 17 N 1.46955 * 109.36741 * 301.60834 * 16 6 5 18 18 C 1.46896 * 111.00423 * 183.19025 * 17 16 6 19 19 C 1.52994 * 117.49993 * 119.82379 * 18 17 16 20 20 C 1.52997 * 117.49735 * 51.19940 * 18 17 16 21 21 H 1.09006 * 109.46757 * 299.95672 * 1 2 3 22 22 H 1.08997 * 109.46842 * 59.95157 * 1 2 3 23 23 H 1.09000 * 109.46825 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.49200 * 298.33797 * 4 2 1 25 25 H 1.09002 * 109.48985 * 58.38216 * 4 2 1 26 26 H 1.00901 * 110.99721 * 64.56588 * 5 4 2 27 27 H 0.96996 * 119.99719 * 179.97438 * 11 10 8 28 28 H 1.09002 * 109.48847 * 181.64070 * 16 6 5 29 29 H 1.09003 * 109.49229 * 61.57671 * 16 6 5 30 30 H 1.09002 * 115.54683 * 265.52889 * 18 17 16 31 31 H 1.09001 * 117.50167 * 359.97438 * 19 18 17 32 32 H 1.08998 * 117.50021 * 145.02479 * 19 18 17 33 33 H 1.09005 * 117.49475 * 214.98146 * 20 18 17 34 34 H 1.08994 * 117.50152 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7223 1.2490 5 7 3.5097 -0.7554 1.2268 6 6 3.9999 -1.4490 0.0276 7 1 3.6361 -2.4765 0.0277 8 6 5.5069 -1.4494 0.0273 9 1 6.0470 -0.9814 -0.7825 10 6 6.1965 -2.0474 1.0608 11 7 5.5388 -2.6169 2.0472 12 14 8.0643 -2.0485 1.0602 13 1 8.5602 -0.6487 1.0606 14 1 8.5595 -2.7489 2.2725 15 1 8.5585 -2.7483 -0.1528 16 6 3.4893 -0.7266 -1.2213 17 7 2.0203 -0.6940 -1.1990 18 6 1.4888 -0.0743 -2.4202 19 6 0.5729 -0.9245 -3.3028 20 6 1.9975 -0.6066 -3.7614 21 1 -0.3633 0.5132 0.8904 22 1 -0.3633 0.5146 -0.8895 23 1 -0.3633 -1.0277 -0.0005 24 1 1.7022 -0.1926 2.1394 25 1 1.6541 -1.7414 1.2632 26 1 3.8933 0.1758 1.2879 27 1 6.0238 -3.0379 2.7741 28 1 3.8278 -1.2564 -2.1118 29 1 3.8755 0.2926 -1.2354 30 1 1.2735 0.9920 -2.3509 31 1 0.3650 -1.9439 -2.9775 32 1 -0.2454 -0.4177 -3.8143 33 1 2.1164 0.1095 -4.5746 34 1 2.7268 -1.4162 -3.7376 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218965337.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:58 Heat of formation + Delta-G solvation = 14.898342 kcal Electronic energy + Delta-G solvation = -14558.168902 eV Core-core repulsion = 12297.813496 eV Total energy + Delta-G solvation = -2260.355407 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.47434 -37.48403 -35.13349 -33.20429 -32.67433 -28.97595 -26.09242 -25.54561 -23.34830 -22.41955 -21.80709 -20.79739 -18.62854 -17.26090 -16.50455 -16.11485 -15.91888 -15.48479 -15.23889 -14.57513 -14.19049 -13.86162 -13.44156 -13.13742 -12.79109 -12.69895 -12.61553 -12.45974 -12.28253 -12.09254 -11.84373 -11.59677 -11.35034 -11.15733 -10.82148 -10.52548 -9.21927 -8.56699 -7.97650 -6.20503 1.44783 1.45833 1.53371 2.45654 2.81855 2.98941 3.23093 3.89796 4.01053 4.05639 4.07284 4.23099 4.35561 4.41564 4.49405 4.57426 4.73597 4.77005 4.84820 4.94673 4.99909 5.04711 5.13138 5.18454 5.33324 5.36070 5.51263 5.73403 6.10310 6.24856 6.36019 6.62758 7.08644 7.10594 7.52379 9.05863 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.041225 B = 0.009300 C = 0.007953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.028534 B = 3010.050740 C = 3519.849178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.051 3.949 3 H 0.027 0.973 4 C 0.067 3.933 5 N -0.669 5.669 6 C 0.232 3.768 7 H -0.001 1.001 8 C -0.558 4.558 9 H 0.051 0.949 10 C 0.035 3.965 11 N -0.880 5.880 12 Si 0.952 3.048 13 H -0.272 1.272 14 H -0.285 1.285 15 H -0.273 1.273 16 C 0.051 3.949 17 N -0.516 5.516 18 C -0.008 4.008 19 C -0.147 4.147 20 C -0.181 4.181 21 H 0.072 0.928 22 H 0.063 0.937 23 H 0.054 0.946 24 H 0.078 0.922 25 H 0.048 0.952 26 H 0.317 0.683 27 H 0.256 0.744 28 H 0.061 0.939 29 H 0.011 0.989 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.176 6.149 -7.044 13.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.059 4.059 3 H 0.045 0.955 4 C -0.064 4.064 5 N -0.297 5.297 6 C 0.123 3.877 7 H 0.017 0.983 8 C -0.597 4.597 9 H 0.069 0.931 10 C -0.169 4.169 11 N -0.515 5.515 12 Si 0.777 3.223 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.198 1.198 16 C -0.079 4.079 17 N -0.240 5.240 18 C -0.117 4.117 19 C -0.184 4.184 20 C -0.218 4.218 21 H 0.091 0.909 22 H 0.082 0.918 23 H 0.074 0.926 24 H 0.096 0.904 25 H 0.067 0.933 26 H 0.134 0.866 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.029 0.971 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.136 0.864 33 H 0.131 0.869 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.282 4.982 -6.413 12.333 hybrid contribution 1.293 1.200 -0.496 1.832 sum -7.989 6.182 -6.909 12.239 Atomic orbital electron populations 1.21679 0.92152 1.02256 1.02306 1.22453 0.97379 0.94609 0.91470 0.95479 1.22132 0.89513 0.99319 0.95392 1.60831 1.04684 1.20934 1.43207 1.18863 0.93152 0.91985 0.83676 0.98256 1.21237 0.91692 1.38871 1.07911 0.93084 1.25709 1.02100 0.94130 0.94951 1.70249 1.36352 1.34994 1.09921 0.85753 0.80953 0.78271 0.77312 1.19721 1.21069 1.19812 1.22689 0.86399 0.97799 1.00978 1.61999 1.08082 1.52728 1.01239 1.22498 1.05611 0.95878 0.87706 1.23070 0.93196 1.00883 1.01300 1.23109 0.98301 1.03706 0.96702 0.90872 0.91846 0.92641 0.90363 0.93304 0.86602 0.93515 0.92084 0.97054 0.88980 0.89551 0.86437 0.86917 0.90143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.32 9.03 71.98 0.65 -2.67 16 2 C 0.05 1.75 2.49 44.92 0.11 1.86 16 3 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 4 C 0.07 2.68 6.00 86.31 0.52 3.20 16 5 N -0.67 -32.78 5.88 -495.03 -2.91 -35.69 16 6 C 0.23 12.11 2.45 44.17 0.11 12.22 16 7 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 8 C -0.56 -31.40 8.69 25.60 0.22 -31.18 16 9 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 10 C 0.04 1.98 5.39 84.65 0.46 2.44 16 11 N -0.88 -52.57 12.77 21.45 0.27 -52.30 16 12 Si 0.95 44.13 29.54 68.60 2.03 46.15 16 13 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 14 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 15 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 16 C 0.05 2.22 4.62 86.31 0.40 2.61 16 17 N -0.52 -19.08 4.69 -845.44 -3.96 -23.04 16 18 C -0.01 -0.24 3.97 44.91 0.18 -0.07 16 19 C -0.15 -3.58 10.46 30.59 0.32 -3.26 16 20 C -0.18 -4.81 9.71 30.59 0.30 -4.51 16 21 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 22 H 0.06 1.49 7.00 -2.39 -0.02 1.48 16 23 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 25 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.32 15.24 8.79 -89.69 -0.79 14.45 16 27 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 28 H 0.06 2.68 6.54 -2.39 -0.02 2.67 16 29 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.09 2.52 7.87 -2.39 -0.02 2.50 16 31 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.11 2.44 8.14 -2.38 -0.02 2.42 16 34 H 0.08 2.47 6.96 -2.39 -0.02 2.45 16 Total: -1.00 -62.26 271.64 -1.03 -63.29 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.28 Total: 20.93 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: 3.26 Total: -19.35 kcal Atomic # 7 Polarization: -104.43 SS G_CDS: -6.60 Total: -111.02 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -62.26 -1.03 -63.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218965337.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.188 kcal (2) G-P(sol) polarization free energy of solvation -62.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds