Wall clock time and date at job start Mon Mar 30 2020 03:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50694 * 120.00262 * 2 1 4 4 N 1.46908 * 109.47111 * 124.99881 * 3 2 1 5 5 C 1.46950 * 110.99607 * 66.04685 * 4 3 2 6 6 C 1.53049 * 109.36290 * 176.81060 * 5 4 3 7 7 H 1.09001 * 109.49047 * 298.40990 * 6 5 4 8 8 C 1.50702 * 109.48918 * 178.36926 * 6 5 4 9 9 H 1.08002 * 120.00299 * 0.05008 * 8 6 5 10 10 C 1.37884 * 119.99942 * 179.76566 * 8 6 5 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 6 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 6 13 13 H 1.48496 * 109.47341 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.46983 * 120.00379 * 12 10 8 15 15 H 1.48503 * 109.47491 * 240.00192 * 12 10 8 16 16 N 1.46956 * 109.38155 * 58.39664 * 6 5 4 17 17 C 1.46958 * 110.87657 * 300.71007 * 16 6 5 18 18 C 1.46951 * 110.99977 * 302.25093 * 4 3 2 19 19 H 1.09004 * 109.49153 * 63.22017 * 18 4 3 20 20 C 1.53001 * 109.49033 * 303.17572 * 18 4 3 21 21 H 1.08003 * 120.00133 * 359.97438 * 1 2 3 22 22 H 1.08000 * 120.00219 * 179.97438 * 1 2 3 23 23 H 1.08000 * 119.99688 * 180.02562 * 2 1 3 24 24 H 1.09004 * 109.46716 * 5.00349 * 3 2 1 25 25 H 1.09001 * 109.47629 * 245.00237 * 3 2 1 26 26 H 1.09004 * 109.49016 * 56.84918 * 5 4 3 27 27 H 1.08999 * 109.51640 * 296.79386 * 5 4 3 28 28 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 29 29 H 1.00895 * 111.00493 * 64.55256 * 16 6 5 30 30 H 1.09003 * 109.47255 * 299.32099 * 17 16 6 31 31 H 1.08997 * 109.50956 * 179.28026 * 17 16 6 32 32 H 1.09005 * 109.47001 * 60.00088 * 20 18 4 33 33 H 1.09005 * 109.47173 * 180.02562 * 20 18 4 34 34 H 1.08997 * 109.47372 * 300.00033 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9963 1.3318 1.1346 5 6 4.0497 0.3199 0.9742 6 6 5.0430 0.4333 2.1331 7 1 5.5108 1.4176 2.1161 8 6 6.1024 -0.6293 1.9930 9 1 6.0713 -1.3165 1.1604 10 6 7.1148 -0.7205 2.9247 11 7 7.1526 0.1162 3.9386 12 14 8.4322 -2.0327 2.7469 13 1 8.1649 -2.8410 1.5302 14 1 9.7632 -1.3849 2.6278 15 1 8.4164 -2.9152 3.9412 16 7 4.3307 0.2507 3.4055 17 6 3.2769 1.2623 3.5656 18 6 2.2837 1.1490 2.4067 19 1 1.8162 0.1644 2.4234 20 6 1.2077 2.2274 2.5486 21 1 -0.5400 0.9353 0.0004 22 1 -0.5400 -0.9353 -0.0004 23 1 1.8499 -0.9353 -0.0004 24 1 1.3585 2.1316 0.0896 25 1 2.6213 1.4026 -0.9314 26 1 4.5711 0.4840 0.0311 27 1 3.6027 -0.6742 0.9743 28 1 7.8646 0.0518 4.5943 29 1 3.9507 -0.6813 3.4767 30 1 3.7243 2.2563 3.5652 31 1 2.7555 1.0987 4.5087 32 1 0.5017 2.1472 1.7220 33 1 0.6796 2.0918 3.4925 34 1 1.6755 3.2118 2.5327 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218965554.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:14 Heat of formation + Delta-G solvation = 29.790717 kcal Electronic energy + Delta-G solvation = -14568.575329 eV Core-core repulsion = 12308.865704 eV Total energy + Delta-G solvation = -2259.709625 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.96912 -35.02580 -32.97252 -31.51647 -31.24210 -27.47802 -25.83592 -23.99682 -22.80903 -20.73495 -20.21993 -18.55579 -16.59096 -15.58537 -14.69743 -14.57910 -14.32772 -14.06426 -13.70932 -13.15386 -12.82213 -12.19009 -12.00597 -11.60467 -11.52607 -11.31527 -11.03535 -10.88458 -10.75175 -10.48373 -10.39909 -10.07878 -9.64294 -9.26505 -8.89404 -8.38744 -7.77080 -6.74009 -5.85072 -3.99956 2.35686 3.34205 3.42547 3.45333 4.42677 4.58540 5.04193 5.26051 5.30213 5.47008 5.51689 5.61270 5.79950 5.88913 5.99510 6.03536 6.11685 6.26516 6.30075 6.36985 6.47048 6.49763 6.68610 6.82015 6.86344 6.90860 7.43159 7.68884 7.79243 7.95454 8.26767 8.64017 8.97568 9.16137 9.68784 11.19375 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.045647 B = 0.008877 C = 0.007931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.250306 B = 3153.448958 C = 3529.629385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.176 4.176 3 C 0.074 3.926 4 N -0.524 5.524 5 C 0.028 3.972 6 C 0.226 3.774 7 H 0.046 0.954 8 C -0.540 4.540 9 H 0.053 0.947 10 C 0.084 3.916 11 N -0.845 5.845 12 Si 0.883 3.117 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.285 1.285 16 N -0.649 5.649 17 C 0.064 3.936 18 C 0.044 3.956 19 H 0.032 0.968 20 C -0.141 4.141 21 H 0.093 0.907 22 H 0.091 0.909 23 H 0.106 0.894 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.021 0.979 28 H 0.255 0.745 29 H 0.317 0.683 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.892 1.597 -4.380 11.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.195 4.195 3 C -0.054 4.054 4 N -0.247 5.247 5 C -0.101 4.101 6 C 0.118 3.882 7 H 0.064 0.936 8 C -0.579 4.579 9 H 0.071 0.929 10 C -0.123 4.123 11 N -0.480 5.480 12 Si 0.711 3.289 13 H -0.200 1.200 14 H -0.211 1.211 15 H -0.211 1.211 16 N -0.275 5.275 17 C -0.067 4.067 18 C -0.066 4.066 19 H 0.050 0.950 20 C -0.199 4.199 21 H 0.112 0.888 22 H 0.109 0.891 23 H 0.124 0.876 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.039 0.961 28 H 0.065 0.935 29 H 0.133 0.867 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.044 2.498 -3.795 11.024 hybrid contribution -0.441 -1.976 -0.783 2.171 sum -10.485 0.521 -4.578 11.453 Atomic orbital electron populations 1.23729 0.95859 1.01250 1.02572 1.23792 0.96658 1.00675 0.98425 1.21478 0.94947 0.93590 0.95410 1.62508 1.11609 1.49979 1.00643 1.23109 0.93078 0.90934 1.02977 1.19168 0.89269 0.98420 0.81308 0.93631 1.20957 1.09280 1.17118 1.10539 0.92855 1.24951 0.97041 0.95317 0.95032 1.70130 1.31068 1.35170 1.11628 0.86720 0.82128 0.82208 0.77888 1.19974 1.21089 1.21099 1.61073 1.24233 1.03820 1.38388 1.22136 0.91575 0.99012 0.93985 1.22490 0.95097 0.96722 0.92321 0.95009 1.21830 0.97887 0.99574 1.00624 0.88833 0.89108 0.87635 0.90684 0.90510 0.91708 0.96114 0.93497 0.86684 0.91378 0.92576 0.93325 0.92843 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.42 13.90 29.02 0.40 -2.01 16 2 C -0.18 -2.53 7.57 -36.03 -0.27 -2.80 16 3 C 0.07 1.12 5.30 -4.97 -0.03 1.10 16 4 N -0.52 -9.66 4.73 -227.93 -1.08 -10.74 16 5 C 0.03 0.59 4.55 -3.77 -0.02 0.58 16 6 C 0.23 5.69 2.45 -68.81 -0.17 5.52 16 7 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 8 C -0.54 -14.80 8.68 -34.44 -0.30 -15.10 16 9 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 10 C 0.08 2.33 5.39 -17.82 -0.10 2.23 16 11 N -0.85 -24.68 12.78 55.43 0.71 -23.97 16 12 Si 0.88 21.23 29.54 -169.99 -5.02 16.21 16 13 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 N -0.65 -15.50 5.88 -107.81 -0.63 -16.14 16 17 C 0.06 1.28 6.00 -3.77 -0.02 1.26 16 18 C 0.04 0.78 2.16 -67.66 -0.15 0.63 16 19 H 0.03 0.58 7.15 -51.93 -0.37 0.21 16 20 C -0.14 -2.03 8.86 37.16 0.33 -1.70 16 21 H 0.09 1.04 7.68 -52.48 -0.40 0.64 16 22 H 0.09 1.02 8.06 -52.49 -0.42 0.60 16 23 H 0.11 1.64 7.02 -52.49 -0.37 1.27 16 24 H 0.07 1.04 6.03 -51.93 -0.31 0.73 16 25 H 0.08 1.14 8.10 -51.93 -0.42 0.72 16 26 H 0.06 1.37 8.11 -51.93 -0.42 0.95 16 27 H 0.02 0.44 6.78 -51.93 -0.35 0.09 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.32 7.48 8.79 -39.29 -0.35 7.13 16 30 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.64 5.80 -51.93 -0.30 0.34 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 269.39 15.07 4.06 4.06 Total: -1.00 -28.48 269.39 -7.66 -36.13 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -5.37 Total: 4.74 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -0.32 Total: -10.29 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: -1.00 Total: -50.85 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.48 -7.66 -36.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218965554.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.925 kcal (2) G-P(sol) polarization free energy of solvation -28.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds