Wall clock time and date at job start Mon Mar 30 2020 03:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50694 * 120.00262 * 2 1 4 4 N 1.46908 * 109.47111 * 124.99881 * 3 2 1 5 5 C 1.46950 * 110.99607 * 66.04685 * 4 3 2 6 6 C 1.53049 * 109.36290 * 176.81060 * 5 4 3 7 7 H 1.09001 * 109.49047 * 298.40990 * 6 5 4 8 8 C 1.50702 * 109.48918 * 178.36926 * 6 5 4 9 9 H 1.08002 * 120.00299 * 0.05008 * 8 6 5 10 10 C 1.37884 * 119.99942 * 179.76566 * 8 6 5 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 6 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 6 13 13 H 1.48496 * 109.47341 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.46983 * 120.00379 * 12 10 8 15 15 H 1.48503 * 109.47491 * 240.00192 * 12 10 8 16 16 N 1.46956 * 109.38155 * 58.39664 * 6 5 4 17 17 C 1.46958 * 110.87657 * 300.71007 * 16 6 5 18 18 C 1.46951 * 110.99977 * 302.25093 * 4 3 2 19 19 H 1.09004 * 109.49153 * 63.22017 * 18 4 3 20 20 C 1.53001 * 109.49033 * 303.17572 * 18 4 3 21 21 H 1.08003 * 120.00133 * 359.97438 * 1 2 3 22 22 H 1.08000 * 120.00219 * 179.97438 * 1 2 3 23 23 H 1.08000 * 119.99688 * 180.02562 * 2 1 3 24 24 H 1.09004 * 109.46716 * 5.00349 * 3 2 1 25 25 H 1.09001 * 109.47629 * 245.00237 * 3 2 1 26 26 H 1.09004 * 109.49016 * 56.84918 * 5 4 3 27 27 H 1.08999 * 109.51640 * 296.79386 * 5 4 3 28 28 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 29 29 H 1.00895 * 111.00493 * 64.55256 * 16 6 5 30 30 H 1.09003 * 109.47255 * 299.32099 * 17 16 6 31 31 H 1.08997 * 109.50956 * 179.28026 * 17 16 6 32 32 H 1.09005 * 109.47001 * 60.00088 * 20 18 4 33 33 H 1.09005 * 109.47173 * 180.02562 * 20 18 4 34 34 H 1.08997 * 109.47372 * 300.00033 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9963 1.3318 1.1346 5 6 4.0497 0.3199 0.9742 6 6 5.0430 0.4333 2.1331 7 1 5.5108 1.4176 2.1161 8 6 6.1024 -0.6293 1.9930 9 1 6.0713 -1.3165 1.1604 10 6 7.1148 -0.7205 2.9247 11 7 7.1526 0.1162 3.9386 12 14 8.4322 -2.0327 2.7469 13 1 8.1649 -2.8410 1.5302 14 1 9.7632 -1.3849 2.6278 15 1 8.4164 -2.9152 3.9412 16 7 4.3307 0.2507 3.4055 17 6 3.2769 1.2623 3.5656 18 6 2.2837 1.1490 2.4067 19 1 1.8162 0.1644 2.4234 20 6 1.2077 2.2274 2.5486 21 1 -0.5400 0.9353 0.0004 22 1 -0.5400 -0.9353 -0.0004 23 1 1.8499 -0.9353 -0.0004 24 1 1.3585 2.1316 0.0896 25 1 2.6213 1.4026 -0.9314 26 1 4.5711 0.4840 0.0311 27 1 3.6027 -0.6742 0.9743 28 1 7.8646 0.0518 4.5943 29 1 3.9507 -0.6813 3.4767 30 1 3.7243 2.2563 3.5652 31 1 2.7555 1.0987 4.5087 32 1 0.5017 2.1472 1.7220 33 1 0.6796 2.0918 3.4925 34 1 1.6755 3.2118 2.5327 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218965554.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:14 Heat of formation + Delta-G solvation = 9.280716 kcal Electronic energy + Delta-G solvation = -14569.464709 eV Core-core repulsion = 12308.865704 eV Total energy + Delta-G solvation = -2260.599005 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.48631 -36.58412 -34.70057 -33.01442 -32.92317 -29.15888 -27.29369 -25.79336 -24.34213 -22.36842 -21.66069 -19.94593 -18.58084 -17.06395 -16.33733 -16.07220 -15.96146 -15.63128 -15.30549 -14.68592 -14.25754 -13.96142 -13.51936 -13.09243 -12.86329 -12.75723 -12.65715 -12.46621 -12.41764 -12.10659 -11.90388 -11.80797 -11.55429 -10.90769 -10.53456 -10.34302 -9.23692 -8.53677 -7.97410 -6.20011 1.32091 1.43190 1.44989 1.55679 2.46476 3.10388 3.23875 3.90011 3.97035 4.13772 4.15874 4.27755 4.41900 4.48023 4.57738 4.70388 4.74760 4.85027 4.93588 4.97831 5.06914 5.10457 5.17569 5.37783 5.53371 5.65616 5.73409 5.76628 6.12205 6.24554 6.35078 6.64338 7.09988 7.12259 7.52981 9.06341 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.045647 B = 0.008877 C = 0.007931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.250306 B = 3153.448958 C = 3529.629385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.202 4.202 3 C 0.077 3.923 4 N -0.536 5.536 5 C 0.046 3.954 6 C 0.230 3.770 7 H 0.001 0.999 8 C -0.556 4.556 9 H 0.051 0.949 10 C 0.035 3.965 11 N -0.880 5.880 12 Si 0.951 3.049 13 H -0.269 1.269 14 H -0.282 1.282 15 H -0.281 1.281 16 N -0.669 5.669 17 C 0.065 3.935 18 C 0.052 3.948 19 H 0.029 0.971 20 C -0.133 4.133 21 H 0.113 0.887 22 H 0.104 0.896 23 H 0.087 0.913 24 H 0.096 0.904 25 H 0.075 0.925 26 H 0.058 0.942 27 H 0.018 0.982 28 H 0.255 0.745 29 H 0.316 0.684 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.703 1.305 -4.896 13.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.222 4.222 3 C -0.050 4.050 4 N -0.260 5.260 5 C -0.084 4.084 6 C 0.122 3.878 7 H 0.019 0.981 8 C -0.595 4.595 9 H 0.069 0.931 10 C -0.169 4.169 11 N -0.516 5.516 12 Si 0.777 3.223 13 H -0.193 1.193 14 H -0.207 1.207 15 H -0.207 1.207 16 N -0.296 5.296 17 C -0.066 4.066 18 C -0.058 4.058 19 H 0.047 0.953 20 C -0.190 4.190 21 H 0.131 0.869 22 H 0.122 0.878 23 H 0.105 0.895 24 H 0.114 0.886 25 H 0.094 0.906 26 H 0.076 0.924 27 H 0.036 0.964 28 H 0.064 0.936 29 H 0.133 0.867 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.875 2.209 -4.328 12.831 hybrid contribution 0.043 -1.845 -0.635 1.951 sum -11.833 0.365 -4.963 12.837 Atomic orbital electron populations 1.23971 0.94971 1.02826 0.98774 1.23555 0.97396 0.99330 1.01915 1.21503 0.94685 0.94948 0.93879 1.62440 1.12418 1.48763 1.02360 1.22685 0.93254 0.91688 1.00734 1.18878 0.90066 0.95280 0.83590 0.98107 1.21310 1.10360 1.17442 1.10407 0.93114 1.25706 0.99160 0.97360 0.94692 1.70265 1.31957 1.36891 1.12472 0.85647 0.79217 0.79497 0.77948 1.19328 1.20746 1.20719 1.60836 1.26174 1.04563 1.38045 1.22140 0.91377 0.96770 0.96283 1.22362 0.94876 0.97943 0.90623 0.95268 1.21769 0.96994 0.97894 1.02393 0.86889 0.87776 0.89496 0.88609 0.90648 0.92368 0.96412 0.93551 0.86729 0.93283 0.90709 0.91506 0.91039 0.92419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.51 13.90 67.78 0.94 -2.56 16 2 C -0.20 -5.39 7.57 25.65 0.19 -5.19 16 3 C 0.08 2.20 5.30 85.55 0.45 2.65 16 4 N -0.54 -19.43 4.73 -875.03 -4.14 -23.58 16 5 C 0.05 1.99 4.55 86.31 0.39 2.38 16 6 C 0.23 11.98 2.45 44.18 0.11 12.09 16 7 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 8 C -0.56 -31.24 8.68 25.60 0.22 -31.02 16 9 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 10 C 0.03 1.96 5.39 84.66 0.46 2.41 16 11 N -0.88 -52.59 12.78 21.45 0.27 -52.31 16 12 Si 0.95 44.18 29.54 68.60 2.03 46.21 16 13 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 14 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 15 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 16 N -0.67 -32.71 5.88 -495.01 -2.91 -35.63 16 17 C 0.06 2.59 6.00 86.31 0.52 3.11 16 18 C 0.05 1.75 2.16 44.92 0.10 1.85 16 19 H 0.03 1.02 7.15 -2.38 -0.02 1.00 16 20 C -0.13 -3.40 8.86 71.98 0.64 -2.76 16 21 H 0.11 1.96 7.68 -2.91 -0.02 1.93 16 22 H 0.10 1.93 8.06 -2.91 -0.02 1.91 16 23 H 0.09 2.64 7.02 -2.91 -0.02 2.62 16 24 H 0.10 2.34 6.03 -2.38 -0.01 2.32 16 25 H 0.08 2.15 8.10 -2.39 -0.02 2.13 16 26 H 0.06 2.52 8.11 -2.38 -0.02 2.50 16 27 H 0.02 0.77 6.78 -2.39 -0.02 0.75 16 28 H 0.26 14.50 8.31 -92.70 -0.77 13.73 16 29 H 0.32 15.21 8.79 -89.70 -0.79 14.43 16 30 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 32 H 0.07 1.48 5.80 -2.38 -0.01 1.47 16 33 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 34 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -62.13 269.39 -0.46 -62.58 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.28 Total: 19.77 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: 4.02 Total: -17.04 kcal Atomic # 7 Polarization: -104.74 SS G_CDS: -6.78 Total: -111.52 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -62.13 -0.46 -62.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218965554.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.862 kcal (2) G-P(sol) polarization free energy of solvation -62.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds