Wall clock time and date at job start Mon Mar 30 2020 03:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.49301 * 2 1 4 4 C 1.53044 * 109.50819 * 239.94113 * 2 1 3 5 5 N 1.46964 * 109.36663 * 181.62310 * 4 2 1 6 6 C 1.46899 * 111.00041 * 183.19239 * 5 4 2 7 7 C 1.53004 * 117.49790 * 243.61963 * 6 5 4 8 8 C 1.52997 * 59.99906 * 252.51123 * 7 6 5 9 9 C 1.46952 * 110.87911 * 59.32266 * 5 4 2 10 10 C 1.53052 * 109.36452 * 300.67995 * 9 5 4 11 11 H 1.09002 * 109.48943 * 298.43584 * 10 9 5 12 12 C 1.50696 * 109.50824 * 178.38031 * 10 9 5 13 13 H 1.08005 * 119.99819 * 0.05216 * 12 10 9 14 14 C 1.37879 * 120.00436 * 180.02562 * 12 10 9 15 15 N 1.31516 * 119.99746 * 0.02562 * 14 12 10 16 16 Si 1.86795 * 120.00168 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47507 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47215 * 120.00166 * 16 14 12 19 19 H 1.48499 * 109.47236 * 239.99926 * 16 14 12 20 20 N 1.46954 * 109.36482 * 58.40334 * 10 9 5 21 21 H 1.09000 * 109.47445 * 299.96256 * 1 2 3 22 22 H 1.08997 * 109.47029 * 59.95719 * 1 2 3 23 23 H 1.08996 * 109.47712 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.49053 * 301.59072 * 4 2 1 25 25 H 1.09003 * 109.49210 * 61.63532 * 4 2 1 26 26 H 1.09005 * 115.55122 * 29.32866 * 6 5 4 27 27 H 1.08997 * 117.49605 * 0.02562 * 7 6 5 28 28 H 1.08999 * 117.49810 * 145.02013 * 7 6 5 29 29 H 1.08998 * 117.49470 * 252.50609 * 8 7 6 30 30 H 1.08997 * 117.51461 * 107.48586 * 8 7 6 31 31 H 1.08999 * 109.48996 * 180.71630 * 9 5 4 32 32 H 1.08996 * 109.48784 * 60.64625 * 9 5 4 33 33 H 0.96996 * 120.00124 * 180.02562 * 15 14 12 34 34 H 1.00900 * 110.99890 * 176.81235 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0410 -0.7226 -1.2486 5 7 3.5101 -0.7548 -1.2259 6 6 4.0420 -1.3747 -2.4469 7 6 4.8274 -2.6786 -2.2928 8 6 5.5606 -1.3796 -2.6328 9 6 4.0003 -1.4484 -0.0267 10 6 3.4892 -0.7258 1.2220 11 1 3.8752 0.2935 1.2358 12 6 3.9571 -1.4574 2.4536 13 1 4.5597 -2.3484 2.3562 14 6 3.6164 -0.9890 3.7048 15 7 2.8826 0.0960 3.8235 16 14 4.1957 -1.8962 5.2315 17 1 5.0000 -3.0781 4.8296 18 1 5.0300 -0.9888 6.0598 19 1 3.0184 -2.3425 6.0187 20 7 2.0202 -0.6936 1.1993 21 1 -0.3634 0.5132 0.8903 22 1 -0.3633 0.5145 -0.8896 23 1 -0.3634 -1.0276 -0.0005 24 1 1.6551 -1.7419 -1.2624 25 1 1.7023 -0.1934 -2.1393 26 1 3.4261 -1.2601 -3.3390 27 1 4.9491 -3.0767 -1.2854 28 1 4.7282 -3.4224 -3.0834 29 1 5.9438 -1.2687 -3.6472 30 1 6.1651 -0.9226 -1.8494 31 1 5.0903 -1.4481 -0.0264 32 1 3.6366 -2.4759 -0.0267 33 1 2.6432 0.4258 4.7037 34 1 1.6549 -0.2678 2.0380 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218965650.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:14 Heat of formation + Delta-G solvation = 31.622321 kcal Electronic energy + Delta-G solvation = -14564.430177 eV Core-core repulsion = 12304.799977 eV Total energy + Delta-G solvation = -2259.630200 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.91436 -36.15825 -33.17599 -31.90360 -30.48769 -26.71879 -25.29055 -24.10415 -22.10351 -21.06867 -19.74271 -18.45575 -16.65694 -15.84126 -15.07907 -14.59763 -14.17945 -13.94516 -13.44875 -13.15417 -12.69916 -12.17760 -11.63794 -11.56729 -11.45937 -11.09175 -10.95331 -10.76805 -10.61387 -10.41898 -10.28403 -10.26984 -9.71904 -9.40454 -9.07716 -8.57665 -7.54258 -6.83807 -6.09742 -4.12470 3.28760 3.36740 3.40916 4.07934 4.38539 4.54415 5.12977 5.20035 5.24551 5.38150 5.60806 5.67201 5.82517 5.90629 5.95391 6.08651 6.14065 6.19687 6.31961 6.36456 6.45152 6.47103 6.66597 6.70920 6.88159 6.96733 7.45839 7.70737 7.73404 7.91061 8.21009 8.67306 8.99620 9.14267 9.55347 11.00977 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.029562 B = 0.010825 C = 0.008373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.922167 B = 2585.931110 C = 3343.099527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.077 3.923 3 H 0.029 0.971 4 C 0.072 3.928 5 N -0.512 5.512 6 C 0.024 3.976 7 C -0.222 4.222 8 C -0.175 4.175 9 C 0.068 3.932 10 C 0.219 3.781 11 H 0.003 0.997 12 C -0.504 4.504 13 H 0.060 0.940 14 C 0.067 3.933 15 N -0.899 5.899 16 Si 0.899 3.101 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.283 1.283 20 N -0.681 5.681 21 H 0.052 0.948 22 H 0.046 0.954 23 H 0.056 0.944 24 H 0.034 0.966 25 H 0.061 0.939 26 H 0.108 0.892 27 H 0.103 0.897 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.062 0.938 32 H 0.034 0.966 33 H 0.263 0.737 34 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.675 -1.682 -9.409 9.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.034 4.034 3 H 0.046 0.954 4 C -0.056 4.056 5 N -0.234 5.234 6 C -0.085 4.085 7 C -0.261 4.261 8 C -0.213 4.213 9 C -0.059 4.059 10 C 0.111 3.889 11 H 0.021 0.979 12 C -0.543 4.543 13 H 0.078 0.922 14 C -0.134 4.134 15 N -0.539 5.539 16 Si 0.727 3.273 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.210 1.210 20 N -0.319 5.319 21 H 0.071 0.929 22 H 0.065 0.935 23 H 0.075 0.925 24 H 0.053 0.947 25 H 0.079 0.921 26 H 0.126 0.874 27 H 0.121 0.879 28 H 0.104 0.896 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.081 0.919 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -0.662 -1.686 -9.507 9.678 hybrid contribution 0.226 -0.321 1.007 1.080 sum -0.436 -2.007 -8.500 8.745 Atomic orbital electron populations 1.21728 0.95726 1.01577 1.00568 1.21415 0.93661 0.95609 0.92741 0.95354 1.22112 0.86891 0.98984 0.97635 1.62074 1.08467 1.51822 1.01057 1.22622 0.93655 0.97137 0.95134 1.23530 1.07317 0.91950 1.03335 1.23002 0.95282 1.00929 1.02100 1.22425 0.98498 0.95955 0.89045 1.19039 0.84715 0.94560 0.90604 0.97909 1.21129 1.31694 1.11388 0.90110 0.92225 1.24976 0.94670 0.94653 0.99149 1.69690 1.38044 1.22348 1.23867 0.86427 0.78419 0.79735 0.82701 1.19773 1.21105 1.20953 1.61048 1.11172 1.55859 1.03817 0.92860 0.93484 0.92519 0.94726 0.92102 0.87381 0.87876 0.89553 0.89164 0.88576 0.91940 0.94780 0.92687 0.81238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.46 37.15 0.35 -2.00 16 2 C 0.08 1.58 3.19 -67.66 -0.22 1.37 16 3 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 4 C 0.07 1.34 4.85 -3.77 -0.02 1.33 16 5 N -0.51 -10.06 4.92 -226.49 -1.11 -11.17 16 6 C 0.02 0.40 6.12 -67.71 -0.41 -0.02 16 7 C -0.22 -3.34 9.50 -26.73 -0.25 -3.59 16 8 C -0.18 -2.56 9.99 -26.73 -0.27 -2.82 16 9 C 0.07 1.51 3.47 -3.77 -0.01 1.49 16 10 C 0.22 5.66 2.55 -68.81 -0.18 5.48 16 11 H 0.00 0.10 8.14 -51.93 -0.42 -0.33 16 12 C -0.50 -13.93 8.76 -34.44 -0.30 -14.23 16 13 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 14 C 0.07 1.84 5.35 -17.82 -0.10 1.75 16 15 N -0.90 -25.33 11.49 55.43 0.64 -24.69 16 16 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 N -0.68 -16.66 6.17 -100.83 -0.62 -17.29 16 21 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 26 H 0.11 1.54 8.03 -51.93 -0.42 1.12 16 27 H 0.10 1.73 5.89 -51.93 -0.31 1.42 16 28 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.10 1.52 7.58 -51.93 -0.39 1.13 16 31 H 0.06 1.36 6.69 -51.93 -0.35 1.02 16 32 H 0.03 0.78 7.20 -51.93 -0.37 0.41 16 33 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.36 9.61 6.65 -39.29 -0.26 9.35 16 LS Contribution 268.03 15.07 4.04 4.04 Total: -1.00 -28.04 268.03 -8.93 -36.97 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -5.44 Total: 7.13 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -1.40 Total: -11.24 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: -1.10 Total: -53.15 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.04 -8.93 -36.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218965650.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.589 kcal (2) G-P(sol) polarization free energy of solvation -28.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds