Wall clock time and date at job start Mon Mar 30 2020 03:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.49301 * 2 1 4 4 C 1.53044 * 109.50819 * 239.94113 * 2 1 3 5 5 N 1.46964 * 109.36663 * 181.62310 * 4 2 1 6 6 C 1.46899 * 111.00041 * 183.19239 * 5 4 2 7 7 C 1.53004 * 117.49790 * 243.61963 * 6 5 4 8 8 C 1.52997 * 59.99906 * 252.51123 * 7 6 5 9 9 C 1.46952 * 110.87911 * 59.32266 * 5 4 2 10 10 C 1.53052 * 109.36452 * 300.67995 * 9 5 4 11 11 H 1.09002 * 109.48943 * 298.43584 * 10 9 5 12 12 C 1.50696 * 109.50824 * 178.38031 * 10 9 5 13 13 H 1.08005 * 119.99819 * 0.05216 * 12 10 9 14 14 C 1.37879 * 120.00436 * 180.02562 * 12 10 9 15 15 N 1.31516 * 119.99746 * 0.02562 * 14 12 10 16 16 Si 1.86795 * 120.00168 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47507 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47215 * 120.00166 * 16 14 12 19 19 H 1.48499 * 109.47236 * 239.99926 * 16 14 12 20 20 N 1.46954 * 109.36482 * 58.40334 * 10 9 5 21 21 H 1.09000 * 109.47445 * 299.96256 * 1 2 3 22 22 H 1.08997 * 109.47029 * 59.95719 * 1 2 3 23 23 H 1.08996 * 109.47712 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.49053 * 301.59072 * 4 2 1 25 25 H 1.09003 * 109.49210 * 61.63532 * 4 2 1 26 26 H 1.09005 * 115.55122 * 29.32866 * 6 5 4 27 27 H 1.08997 * 117.49605 * 0.02562 * 7 6 5 28 28 H 1.08999 * 117.49810 * 145.02013 * 7 6 5 29 29 H 1.08998 * 117.49470 * 252.50609 * 8 7 6 30 30 H 1.08997 * 117.51461 * 107.48586 * 8 7 6 31 31 H 1.08999 * 109.48996 * 180.71630 * 9 5 4 32 32 H 1.08996 * 109.48784 * 60.64625 * 9 5 4 33 33 H 0.96996 * 120.00124 * 180.02562 * 15 14 12 34 34 H 1.00900 * 110.99890 * 176.81235 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0410 -0.7226 -1.2486 5 7 3.5101 -0.7548 -1.2259 6 6 4.0420 -1.3747 -2.4469 7 6 4.8274 -2.6786 -2.2928 8 6 5.5606 -1.3796 -2.6328 9 6 4.0003 -1.4484 -0.0267 10 6 3.4892 -0.7258 1.2220 11 1 3.8752 0.2935 1.2358 12 6 3.9571 -1.4574 2.4536 13 1 4.5597 -2.3484 2.3562 14 6 3.6164 -0.9890 3.7048 15 7 2.8826 0.0960 3.8235 16 14 4.1957 -1.8962 5.2315 17 1 5.0000 -3.0781 4.8296 18 1 5.0300 -0.9888 6.0598 19 1 3.0184 -2.3425 6.0187 20 7 2.0202 -0.6936 1.1993 21 1 -0.3634 0.5132 0.8903 22 1 -0.3633 0.5145 -0.8896 23 1 -0.3634 -1.0276 -0.0005 24 1 1.6551 -1.7419 -1.2624 25 1 1.7023 -0.1934 -2.1393 26 1 3.4261 -1.2601 -3.3390 27 1 4.9491 -3.0767 -1.2854 28 1 4.7282 -3.4224 -3.0834 29 1 5.9438 -1.2687 -3.6472 30 1 6.1651 -0.9226 -1.8494 31 1 5.0903 -1.4481 -0.0264 32 1 3.6366 -2.4759 -0.0267 33 1 2.6432 0.4258 4.7037 34 1 1.6549 -0.2678 2.0380 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218965650.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:14 Heat of formation + Delta-G solvation = 11.845767 kcal Electronic energy + Delta-G solvation = -14565.287753 eV Core-core repulsion = 12304.799977 eV Total energy + Delta-G solvation = -2260.487776 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.45591 -37.68071 -35.12665 -33.43059 -32.40107 -28.43870 -27.18058 -25.66964 -23.33889 -22.81214 -21.19467 -20.16551 -18.59160 -17.52770 -16.57476 -16.47381 -15.76641 -15.74137 -14.89002 -14.82966 -14.50929 -13.74606 -13.35038 -13.06277 -12.95987 -12.77994 -12.54202 -12.40493 -12.32563 -12.10565 -11.81784 -11.72144 -11.31882 -11.05475 -11.03189 -10.66407 -9.05204 -8.80003 -8.19926 -6.31436 1.40474 1.42174 1.54148 2.40020 2.77985 3.06127 3.19542 3.86935 3.90365 4.06538 4.12695 4.18356 4.37199 4.41879 4.50810 4.58351 4.76656 4.80330 4.83168 4.87127 4.93496 5.08921 5.18777 5.24374 5.28010 5.30841 5.47691 5.74400 5.98246 6.21732 6.31958 6.60913 6.95618 7.10351 7.40564 8.89956 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.029562 B = 0.010825 C = 0.008373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.922167 B = 2585.931110 C = 3343.099527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.069 3.931 3 H 0.007 0.993 4 C 0.076 3.924 5 N -0.528 5.528 6 C 0.008 3.992 7 C -0.217 4.217 8 C -0.166 4.166 9 C 0.089 3.911 10 C 0.219 3.781 11 H -0.044 1.044 12 C -0.530 4.530 13 H 0.055 0.945 14 C 0.021 3.979 15 N -0.923 5.923 16 Si 0.966 3.034 17 H -0.268 1.268 18 H -0.280 1.280 19 H -0.278 1.278 20 N -0.686 5.686 21 H 0.045 0.955 22 H 0.081 0.919 23 H 0.059 0.941 24 H 0.033 0.967 25 H 0.095 0.905 26 H 0.137 0.863 27 H 0.079 0.921 28 H 0.114 0.886 29 H 0.123 0.877 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.024 0.976 33 H 0.266 0.734 34 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.967 -2.473 -10.888 11.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.041 4.041 3 H 0.025 0.975 4 C -0.051 4.051 5 N -0.250 5.250 6 C -0.101 4.101 7 C -0.256 4.256 8 C -0.204 4.204 9 C -0.039 4.039 10 C 0.110 3.890 11 H -0.026 1.026 12 C -0.569 4.569 13 H 0.074 0.926 14 C -0.178 4.178 15 N -0.563 5.563 16 Si 0.791 3.209 17 H -0.193 1.193 18 H -0.206 1.206 19 H -0.204 1.204 20 N -0.322 5.322 21 H 0.064 0.936 22 H 0.100 0.900 23 H 0.078 0.922 24 H 0.051 0.949 25 H 0.113 0.887 26 H 0.155 0.845 27 H 0.097 0.903 28 H 0.133 0.867 29 H 0.141 0.859 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.043 0.957 33 H 0.075 0.925 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.952 -2.483 -11.015 11.332 hybrid contribution 0.322 -0.026 1.425 1.461 sum -0.630 -2.509 -9.590 9.933 Atomic orbital electron populations 1.21654 0.92768 1.02205 1.01952 1.21639 0.96108 0.94285 0.92103 0.97549 1.22131 0.86326 0.98984 0.97701 1.62020 1.09232 1.52278 1.01451 1.22855 0.94900 0.98046 0.94273 1.23514 1.06743 0.92357 1.03024 1.23073 0.94013 1.00055 1.03253 1.22018 0.97922 0.94886 0.89112 1.18926 0.85697 0.92193 0.92145 1.02624 1.21426 1.32355 1.11609 0.91484 0.92628 1.25770 0.94658 0.95374 1.02038 1.69808 1.38543 1.23355 1.24615 0.85390 0.78049 0.78589 0.78832 1.19250 1.20567 1.20376 1.61048 1.10087 1.56386 1.04663 0.93600 0.90005 0.92188 0.94859 0.88679 0.84524 0.90272 0.86740 0.85893 0.90572 0.92497 0.95744 0.92479 0.83034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.16 9.46 71.98 0.68 -3.48 16 2 C 0.07 2.85 3.19 44.92 0.14 2.99 16 3 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 4 C 0.08 2.73 4.85 86.31 0.42 3.15 16 5 N -0.53 -20.35 4.92 -870.47 -4.28 -24.63 16 6 C 0.01 0.25 6.12 44.92 0.27 0.52 16 7 C -0.22 -6.07 9.50 30.59 0.29 -5.78 16 8 C -0.17 -4.48 9.99 30.59 0.31 -4.17 16 9 C 0.09 4.01 3.47 86.31 0.30 4.31 16 10 C 0.22 11.79 2.55 44.17 0.11 11.90 16 11 H -0.04 -2.69 8.14 -2.39 -0.02 -2.71 16 12 C -0.53 -30.20 8.76 25.60 0.22 -29.98 16 13 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 14 C 0.02 1.17 5.35 84.65 0.45 1.62 16 15 N -0.92 -53.31 11.49 21.45 0.25 -53.07 16 16 Si 0.97 44.15 29.54 68.60 2.03 46.18 16 17 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 N -0.69 -34.50 6.17 -472.90 -2.92 -37.41 16 21 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 22 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 23 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.10 2.76 8.12 -2.39 -0.02 2.74 16 26 H 0.14 3.32 8.03 -2.38 -0.02 3.30 16 27 H 0.08 2.61 5.89 -2.39 -0.01 2.60 16 28 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.08 2.37 7.58 -2.39 -0.02 2.35 16 31 H 0.06 2.58 6.69 -2.39 -0.02 2.56 16 32 H 0.02 1.14 7.20 -2.39 -0.02 1.12 16 33 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 34 H 0.35 19.07 6.65 -89.69 -0.60 18.48 16 Total: -1.00 -62.10 268.03 -1.25 -63.35 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 0.47 Total: 24.50 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: 3.20 Total: -18.92 kcal Atomic # 7 Polarization: -108.16 SS G_CDS: -6.95 Total: -115.11 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -62.10 -1.25 -63.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218965650.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.199 kcal (2) G-P(sol) polarization free energy of solvation -62.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds