Wall clock time and date at job start Mon Mar 30 2020 03:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99903 * 2 1 4 4 N 1.46898 * 109.47056 * 124.99765 * 3 2 1 5 5 C 1.46951 * 111.00084 * 302.25105 * 4 3 2 6 6 C 1.53055 * 109.36409 * 183.18690 * 5 4 3 7 7 H 1.09005 * 109.48971 * 61.56456 * 6 5 4 8 8 C 1.52997 * 109.50856 * 181.61841 * 6 5 4 9 9 N 1.46955 * 109.36515 * 301.59971 * 6 5 4 10 10 C 1.46959 * 110.88332 * 59.31585 * 9 6 5 11 11 H 1.09002 * 109.50256 * 60.66076 * 10 9 6 12 12 C 1.50696 * 109.49117 * 180.71517 * 10 9 6 13 13 H 1.07994 * 120.00419 * 119.89208 * 12 10 9 14 14 C 1.37878 * 119.99878 * 299.89164 * 12 10 9 15 15 N 1.31521 * 120.00022 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 120.00125 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47103 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47503 * 120.00259 * 16 14 12 19 19 H 1.48504 * 109.46934 * 240.00143 * 16 14 12 20 20 C 1.46962 * 110.99774 * 66.04834 * 4 3 2 21 21 H 1.08000 * 119.99390 * 179.97438 * 1 2 3 22 22 H 1.07999 * 120.00108 * 0.02562 * 1 2 3 23 23 H 1.07995 * 120.00080 * 179.72973 * 2 1 3 24 24 H 1.09000 * 109.46979 * 245.00349 * 3 2 1 25 25 H 1.08997 * 109.47064 * 5.00286 * 3 2 1 26 26 H 1.09004 * 109.48930 * 303.14933 * 5 4 3 27 27 H 1.08998 * 109.49106 * 63.21967 * 5 4 3 28 28 H 1.08999 * 109.47189 * 179.90700 * 8 6 5 29 29 H 1.09003 * 109.46980 * 299.90250 * 8 6 5 30 30 H 1.09000 * 109.47000 * 59.90182 * 8 6 5 31 31 H 1.00905 * 111.00177 * 183.18835 * 9 6 5 32 32 H 0.96998 * 119.99827 * 179.97438 * 15 14 12 33 33 H 1.08996 * 109.48686 * 296.77965 * 20 4 3 34 34 H 1.09004 * 109.48565 * 56.84293 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 2.2837 1.1491 2.4066 6 6 3.2769 1.2626 3.5656 7 1 3.7243 2.2566 3.5651 8 6 2.5455 1.0326 4.8896 9 7 4.3305 0.2507 3.4052 10 6 5.0431 0.4335 2.1330 11 1 5.5108 1.4179 2.1161 12 6 6.1025 -0.6290 1.9930 13 1 6.0711 -1.3166 1.1609 14 6 7.1121 -0.7232 2.9273 15 7 7.1502 0.1139 3.9410 16 14 8.4258 -2.0397 2.7534 17 1 8.1583 -2.8483 1.5368 18 1 9.7592 -1.3964 2.6375 19 1 8.4040 -2.9216 3.9480 20 6 4.0498 0.3201 0.9742 21 1 -0.5399 -0.9354 -0.0004 22 1 -0.5400 0.9353 -0.0004 23 1 1.8500 -0.9352 0.0044 24 1 2.6213 1.4026 -0.9314 25 1 1.3586 2.1316 0.0896 26 1 1.5173 1.9177 2.5080 27 1 1.8162 0.1646 2.4234 28 1 3.2537 1.1119 5.7144 29 1 1.7642 1.7833 5.0082 30 1 2.0977 0.0389 4.8895 31 1 4.9712 0.2692 4.1845 32 1 7.8603 0.0474 4.5985 33 1 3.6024 -0.6739 0.9746 34 1 4.5711 0.4842 0.0310 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218965745.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:27 Heat of formation + Delta-G solvation = 22.324807 kcal Electronic energy + Delta-G solvation = -14487.178425 eV Core-core repulsion = 12227.145054 eV Total energy + Delta-G solvation = -2260.033371 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.56609 -35.20739 -33.03967 -32.09705 -30.42191 -26.70617 -26.32392 -25.11367 -22.16676 -20.75547 -19.80993 -18.25076 -16.50022 -15.51362 -14.92717 -14.60960 -14.06185 -14.00341 -13.85165 -13.33070 -12.66258 -12.35418 -11.85686 -11.68160 -11.39308 -11.15311 -11.08073 -10.94721 -10.66457 -10.56220 -10.34669 -9.88715 -9.50459 -9.18706 -9.04075 -8.56481 -7.68446 -6.81263 -6.08509 -4.11195 2.42359 3.29332 3.37305 3.41405 4.39348 4.66810 5.11371 5.14789 5.33529 5.58804 5.64151 5.71721 5.93653 5.99734 6.08365 6.10953 6.18827 6.25406 6.41444 6.48020 6.68569 6.69269 6.78186 6.85899 6.92076 6.99810 7.48397 7.71693 7.74202 7.92612 8.23036 8.69436 9.01550 9.16373 9.56615 11.02153 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.035268 B = 0.009546 C = 0.008140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.730459 B = 2932.442911 C = 3439.180827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.175 4.175 3 C 0.078 3.922 4 N -0.537 5.537 5 C 0.071 3.929 6 C 0.077 3.923 7 H 0.027 0.973 8 C -0.138 4.138 9 N -0.680 5.680 10 C 0.219 3.781 11 H 0.003 0.997 12 C -0.504 4.504 13 H 0.060 0.940 14 C 0.067 3.933 15 N -0.900 5.900 16 Si 0.899 3.101 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.284 1.284 20 C 0.067 3.933 21 H 0.091 0.909 22 H 0.093 0.907 23 H 0.108 0.892 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.037 0.963 28 H 0.052 0.948 29 H 0.045 0.955 30 H 0.055 0.945 31 H 0.363 0.637 32 H 0.263 0.737 33 H 0.031 0.969 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.531 1.553 -3.253 10.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.195 4.195 3 C -0.050 4.050 4 N -0.259 5.259 5 C -0.057 4.057 6 C -0.034 4.034 7 H 0.045 0.955 8 C -0.196 4.196 9 N -0.319 5.319 10 C 0.111 3.889 11 H 0.021 0.979 12 C -0.543 4.543 13 H 0.078 0.922 14 C -0.135 4.135 15 N -0.540 5.540 16 Si 0.727 3.273 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.061 4.061 21 H 0.109 0.891 22 H 0.111 0.889 23 H 0.126 0.874 24 H 0.097 0.903 25 H 0.089 0.911 26 H 0.076 0.924 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.187 0.813 32 H 0.073 0.927 33 H 0.050 0.950 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.590 1.601 -3.330 10.277 hybrid contribution 0.821 -0.755 0.185 1.131 sum -8.768 0.847 -3.144 9.354 Atomic orbital electron populations 1.23732 0.95867 1.01266 1.02689 1.23818 0.96664 1.00732 0.98291 1.21402 0.94659 0.93543 0.95422 1.62499 1.12010 1.50237 1.01182 1.22077 0.95347 0.99020 0.89273 1.21420 0.94124 0.95109 0.92787 0.95473 1.21731 0.99588 1.01015 0.97273 1.61036 1.16593 1.46243 1.08001 1.19024 0.89048 0.95909 0.84920 0.97893 1.21146 1.07685 1.15909 1.09566 0.92224 1.24980 0.97604 0.95777 0.95108 1.69696 1.33951 1.36957 1.13385 0.86435 0.81214 0.81621 0.78050 1.19793 1.21101 1.20984 1.22349 0.91955 0.91594 1.00161 0.89066 0.88878 0.87356 0.90345 0.91102 0.92431 0.94522 0.92913 0.93547 0.92578 0.81318 0.92711 0.95037 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.50 14.32 29.01 0.42 -2.08 16 2 C -0.18 -2.59 7.59 -36.03 -0.27 -2.86 16 3 C 0.08 1.21 5.84 -4.98 -0.03 1.18 16 4 N -0.54 -10.37 4.92 -235.91 -1.16 -11.53 16 5 C 0.07 1.34 4.51 -3.77 -0.02 1.32 16 6 C 0.08 1.59 3.19 -67.66 -0.22 1.38 16 7 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 8 C -0.14 -2.39 9.47 37.16 0.35 -2.04 16 9 N -0.68 -16.71 6.17 -100.82 -0.62 -17.33 16 10 C 0.22 5.65 2.55 -68.81 -0.18 5.48 16 11 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 12 C -0.50 -13.92 8.76 -34.44 -0.30 -14.22 16 13 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 14 C 0.07 1.84 5.35 -17.82 -0.10 1.74 16 15 N -0.90 -25.40 11.50 55.43 0.64 -24.76 16 16 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 C 0.07 1.47 4.56 -3.77 -0.02 1.45 16 21 H 0.09 1.05 8.06 -52.49 -0.42 0.63 16 22 H 0.09 1.06 7.84 -52.49 -0.41 0.65 16 23 H 0.11 1.73 7.01 -52.49 -0.37 1.36 16 24 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 25 H 0.07 0.99 7.79 -51.93 -0.40 0.59 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.04 0.71 7.15 -51.93 -0.37 0.34 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.36 9.64 6.65 -39.29 -0.26 9.37 16 32 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.03 0.71 6.77 -51.93 -0.35 0.36 16 34 H 0.06 1.32 8.11 -51.93 -0.42 0.89 16 LS Contribution 271.96 15.07 4.10 4.10 Total: -1.00 -28.00 271.96 -7.94 -35.94 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -5.51 Total: 5.98 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -0.36 Total: -8.65 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: -1.15 Total: -53.62 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.00 -7.94 -35.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218965745.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.261 kcal (2) G-P(sol) polarization free energy of solvation -27.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds