Wall clock time and date at job start Mon Mar 30 2020 03:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99903 * 2 1 4 4 N 1.46898 * 109.47056 * 124.99765 * 3 2 1 5 5 C 1.46951 * 111.00084 * 302.25105 * 4 3 2 6 6 C 1.53055 * 109.36409 * 183.18690 * 5 4 3 7 7 H 1.09005 * 109.48971 * 61.56456 * 6 5 4 8 8 C 1.52997 * 109.50856 * 181.61841 * 6 5 4 9 9 N 1.46955 * 109.36515 * 301.59971 * 6 5 4 10 10 C 1.46959 * 110.88332 * 59.31585 * 9 6 5 11 11 H 1.09002 * 109.50256 * 60.66076 * 10 9 6 12 12 C 1.50696 * 109.49117 * 180.71517 * 10 9 6 13 13 H 1.07994 * 120.00419 * 119.89208 * 12 10 9 14 14 C 1.37878 * 119.99878 * 299.89164 * 12 10 9 15 15 N 1.31521 * 120.00022 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 120.00125 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47103 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47503 * 120.00259 * 16 14 12 19 19 H 1.48504 * 109.46934 * 240.00143 * 16 14 12 20 20 C 1.46962 * 110.99774 * 66.04834 * 4 3 2 21 21 H 1.08000 * 119.99390 * 179.97438 * 1 2 3 22 22 H 1.07999 * 120.00108 * 0.02562 * 1 2 3 23 23 H 1.07995 * 120.00080 * 179.72973 * 2 1 3 24 24 H 1.09000 * 109.46979 * 245.00349 * 3 2 1 25 25 H 1.08997 * 109.47064 * 5.00286 * 3 2 1 26 26 H 1.09004 * 109.48930 * 303.14933 * 5 4 3 27 27 H 1.08998 * 109.49106 * 63.21967 * 5 4 3 28 28 H 1.08999 * 109.47189 * 179.90700 * 8 6 5 29 29 H 1.09003 * 109.46980 * 299.90250 * 8 6 5 30 30 H 1.09000 * 109.47000 * 59.90182 * 8 6 5 31 31 H 1.00905 * 111.00177 * 183.18835 * 9 6 5 32 32 H 0.96998 * 119.99827 * 179.97438 * 15 14 12 33 33 H 1.08996 * 109.48686 * 296.77965 * 20 4 3 34 34 H 1.09004 * 109.48565 * 56.84293 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 2.2837 1.1491 2.4066 6 6 3.2769 1.2626 3.5656 7 1 3.7243 2.2566 3.5651 8 6 2.5455 1.0326 4.8896 9 7 4.3305 0.2507 3.4052 10 6 5.0431 0.4335 2.1330 11 1 5.5108 1.4179 2.1161 12 6 6.1025 -0.6290 1.9930 13 1 6.0711 -1.3166 1.1609 14 6 7.1121 -0.7232 2.9273 15 7 7.1502 0.1139 3.9410 16 14 8.4258 -2.0397 2.7534 17 1 8.1583 -2.8483 1.5368 18 1 9.7592 -1.3964 2.6375 19 1 8.4040 -2.9216 3.9480 20 6 4.0498 0.3201 0.9742 21 1 -0.5399 -0.9354 -0.0004 22 1 -0.5400 0.9353 -0.0004 23 1 1.8500 -0.9352 0.0044 24 1 2.6213 1.4026 -0.9314 25 1 1.3586 2.1316 0.0896 26 1 1.5173 1.9177 2.5080 27 1 1.8162 0.1646 2.4234 28 1 3.2537 1.1119 5.7144 29 1 1.7642 1.7833 5.0082 30 1 2.0977 0.0389 4.8895 31 1 4.9712 0.2692 4.1845 32 1 7.8603 0.0474 4.5985 33 1 3.6024 -0.6739 0.9746 34 1 4.5711 0.4842 0.0310 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218965745.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:27 Heat of formation + Delta-G solvation = 2.388118 kcal Electronic energy + Delta-G solvation = -14488.042945 eV Core-core repulsion = 12227.145054 eV Total energy + Delta-G solvation = -2260.897891 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.16570 -36.73903 -34.94849 -33.47443 -32.27939 -28.44186 -27.66680 -27.02095 -23.70541 -22.51808 -21.13100 -19.83507 -18.53070 -17.17428 -16.41796 -16.38015 -15.73652 -15.65550 -15.27929 -14.79059 -14.50872 -13.70784 -13.51637 -13.33749 -12.95414 -12.82446 -12.67155 -12.37824 -12.29354 -12.19609 -12.07955 -11.62276 -11.30632 -11.01552 -10.65367 -10.30559 -9.20658 -8.77574 -8.18286 -6.29613 1.36130 1.41243 1.43030 1.54874 2.41605 3.07736 3.18792 3.89258 3.98323 4.17192 4.18222 4.34188 4.44070 4.52779 4.61788 4.70955 4.80717 4.87131 4.89571 4.90989 5.07607 5.20019 5.26255 5.31037 5.50453 5.69054 5.76384 5.78121 6.01816 6.24956 6.33084 6.63407 6.98492 7.12579 7.42386 8.91500 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.035268 B = 0.009546 C = 0.008140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.730459 B = 2932.442911 C = 3439.180827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.203 4.203 3 C 0.080 3.920 4 N -0.550 5.550 5 C 0.079 3.921 6 C 0.069 3.931 7 H 0.006 0.994 8 C -0.128 4.128 9 N -0.686 5.686 10 C 0.219 3.781 11 H -0.042 1.042 12 C -0.529 4.529 13 H 0.056 0.944 14 C 0.020 3.980 15 N -0.924 5.924 16 Si 0.966 3.034 17 H -0.268 1.268 18 H -0.280 1.280 19 H -0.279 1.279 20 C 0.083 3.917 21 H 0.104 0.896 22 H 0.113 0.887 23 H 0.088 0.912 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.033 0.967 28 H 0.045 0.955 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.347 0.653 32 H 0.265 0.735 33 H 0.024 0.976 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.233 1.346 -3.566 11.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.223 4.223 3 C -0.047 4.047 4 N -0.272 5.272 5 C -0.049 4.049 6 C -0.042 4.042 7 H 0.024 0.976 8 C -0.186 4.186 9 N -0.322 5.322 10 C 0.111 3.889 11 H -0.024 1.024 12 C -0.568 4.568 13 H 0.074 0.926 14 C -0.179 4.179 15 N -0.564 5.564 16 Si 0.791 3.209 17 H -0.192 1.192 18 H -0.206 1.206 19 H -0.205 1.205 20 C -0.045 4.045 21 H 0.122 0.878 22 H 0.132 0.868 23 H 0.106 0.894 24 H 0.098 0.902 25 H 0.112 0.888 26 H 0.106 0.894 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.169 0.831 32 H 0.075 0.925 33 H 0.042 0.958 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.322 1.399 -3.660 11.980 hybrid contribution 1.273 -0.632 0.272 1.447 sum -10.048 0.767 -3.388 10.632 Atomic orbital electron populations 1.23980 0.94970 1.02866 0.98807 1.23581 0.97423 0.99392 1.01863 1.21455 0.94411 0.94927 0.93880 1.62441 1.12875 1.49001 1.02895 1.22039 0.94972 0.99835 0.88085 1.21643 0.93740 0.92922 0.95874 0.97590 1.21658 0.99874 1.02253 0.94841 1.61038 1.16564 1.47803 1.06770 1.18917 0.89952 0.92984 0.87090 1.02443 1.21457 1.09040 1.16478 1.09836 0.92553 1.25771 0.99631 0.97780 0.94704 1.69815 1.34560 1.38181 1.13868 0.85399 0.78436 0.78935 0.78135 1.19245 1.20553 1.20497 1.21996 0.92136 0.92089 0.98280 0.87773 0.86844 0.89364 0.90159 0.88769 0.89405 0.94865 0.93608 0.90153 0.92351 0.83146 0.92533 0.95797 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.65 14.32 67.78 0.97 -2.68 16 2 C -0.20 -5.59 7.59 25.64 0.19 -5.39 16 3 C 0.08 2.34 5.84 85.56 0.50 2.84 16 4 N -0.55 -20.84 4.92 -900.29 -4.43 -25.27 16 5 C 0.08 2.83 4.51 86.31 0.39 3.22 16 6 C 0.07 2.85 3.19 44.92 0.14 2.99 16 7 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 8 C -0.13 -4.26 9.47 71.98 0.68 -3.57 16 9 N -0.69 -34.53 6.17 -472.88 -2.92 -37.45 16 10 C 0.22 11.73 2.55 44.17 0.11 11.84 16 11 H -0.04 -2.56 8.14 -2.39 -0.02 -2.58 16 12 C -0.53 -30.07 8.76 25.60 0.22 -29.84 16 13 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 14 C 0.02 1.13 5.35 84.65 0.45 1.58 16 15 N -0.92 -53.42 11.50 21.45 0.25 -53.17 16 16 Si 0.97 44.13 29.54 68.60 2.03 46.15 16 17 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 20 C 0.08 3.73 4.56 86.31 0.39 4.13 16 21 H 0.10 2.01 8.06 -2.91 -0.02 1.99 16 22 H 0.11 2.03 7.84 -2.91 -0.02 2.01 16 23 H 0.09 2.78 7.01 -2.91 -0.02 2.76 16 24 H 0.08 2.27 8.10 -2.39 -0.02 2.25 16 25 H 0.09 2.31 7.79 -2.39 -0.02 2.29 16 26 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 27 H 0.03 1.23 7.15 -2.39 -0.02 1.21 16 28 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.35 19.07 6.65 -89.69 -0.60 18.47 16 32 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 33 H 0.02 1.10 6.77 -2.39 -0.02 1.08 16 34 H 0.06 2.63 8.11 -2.38 -0.02 2.61 16 Total: -1.00 -61.51 271.96 -0.55 -62.07 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: 0.46 Total: 22.56 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 4.06 Total: -14.88 kcal Atomic # 7 Polarization: -108.79 SS G_CDS: -7.10 Total: -115.89 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -61.51 -0.55 -62.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218965745.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.457 kcal (2) G-P(sol) polarization free energy of solvation -61.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds