Wall clock time and date at job start Mon Mar 30 2020 03:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99903 * 2 1 4 4 N 1.46898 * 109.47056 * 124.99765 * 3 2 1 5 5 C 1.46951 * 111.00084 * 302.25105 * 4 3 2 6 6 C 1.53055 * 109.36409 * 183.18690 * 5 4 3 7 7 H 1.08994 * 109.48989 * 181.62732 * 6 5 4 8 8 C 1.53006 * 109.50537 * 61.57396 * 6 5 4 9 9 N 1.46955 * 109.36515 * 301.59971 * 6 5 4 10 10 C 1.46959 * 110.88332 * 59.31585 * 9 6 5 11 11 H 1.09002 * 109.50256 * 60.66076 * 10 9 6 12 12 C 1.50696 * 109.49117 * 180.71517 * 10 9 6 13 13 H 1.07994 * 120.00419 * 119.89208 * 12 10 9 14 14 C 1.37878 * 119.99878 * 299.89164 * 12 10 9 15 15 N 1.31521 * 120.00022 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 120.00125 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47103 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47503 * 120.00259 * 16 14 12 19 19 H 1.48504 * 109.46934 * 240.00143 * 16 14 12 20 20 C 1.46962 * 110.99774 * 66.04834 * 4 3 2 21 21 H 1.08000 * 119.99390 * 179.97438 * 1 2 3 22 22 H 1.07999 * 120.00108 * 0.02562 * 1 2 3 23 23 H 1.07995 * 120.00080 * 179.72973 * 2 1 3 24 24 H 1.09000 * 109.46979 * 245.00349 * 3 2 1 25 25 H 1.08997 * 109.47064 * 5.00286 * 3 2 1 26 26 H 1.09004 * 109.48930 * 303.14933 * 5 4 3 27 27 H 1.08998 * 109.49106 * 63.21967 * 5 4 3 28 28 H 1.09004 * 109.46980 * 300.09769 * 8 6 5 29 29 H 1.09000 * 109.47159 * 60.09813 * 8 6 5 30 30 H 1.09004 * 109.47130 * 180.10086 * 8 6 5 31 31 H 1.00905 * 111.00177 * 183.18835 * 9 6 5 32 32 H 0.96998 * 119.99827 * 179.97438 * 15 14 12 33 33 H 1.08996 * 109.48686 * 296.77965 * 20 4 3 34 34 H 1.09007 * 109.49016 * 56.82052 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 2.2837 1.1491 2.4066 6 6 3.2769 1.2626 3.5656 7 1 2.7556 1.0986 4.5086 8 6 3.9049 2.6578 3.5654 9 7 4.3305 0.2507 3.4052 10 6 5.0431 0.4335 2.1330 11 1 5.5108 1.4179 2.1161 12 6 6.1025 -0.6290 1.9930 13 1 6.0711 -1.3166 1.1609 14 6 7.1121 -0.7232 2.9273 15 7 7.1502 0.1139 3.9410 16 14 8.4258 -2.0397 2.7534 17 1 8.1583 -2.8483 1.5368 18 1 9.7592 -1.3964 2.6375 19 1 8.4040 -2.9216 3.9480 20 6 4.0498 0.3201 0.9742 21 1 -0.5399 -0.9354 -0.0004 22 1 -0.5400 0.9353 -0.0004 23 1 1.8500 -0.9352 0.0044 24 1 2.6213 1.4026 -0.9314 25 1 1.3586 2.1316 0.0896 26 1 1.5173 1.9177 2.5080 27 1 1.8162 0.1646 2.4234 28 1 4.4255 2.8218 2.6219 29 1 3.1233 3.4081 3.6844 30 1 4.6135 2.7374 4.3899 31 1 4.9712 0.2692 4.1845 32 1 7.8603 0.0474 4.5985 33 1 3.6024 -0.6739 0.9746 34 1 4.5709 0.4839 0.0308 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218965781.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:30 Heat of formation + Delta-G solvation = 25.973764 kcal Electronic energy + Delta-G solvation = -14622.196632 eV Core-core repulsion = 12362.321492 eV Total energy + Delta-G solvation = -2259.875140 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.71876 -35.28883 -32.91020 -31.90446 -30.21328 -26.66833 -26.21693 -25.12753 -22.31376 -21.27387 -19.73022 -17.56130 -16.75401 -15.50345 -14.79941 -14.49636 -14.16721 -13.93836 -13.70564 -13.16072 -12.88157 -12.20726 -12.09946 -11.69236 -11.20621 -11.08726 -11.00731 -10.77705 -10.64883 -10.58557 -10.35113 -9.72192 -9.47884 -9.18070 -9.04579 -8.55527 -7.65437 -6.78403 -6.07684 -4.09984 2.42767 3.29547 3.37649 3.41650 4.40112 4.69377 5.12329 5.17866 5.34055 5.60812 5.69338 5.79306 5.95759 6.03773 6.11933 6.18447 6.22409 6.38154 6.48089 6.60422 6.67574 6.77660 6.80768 6.87741 6.97664 7.14410 7.55064 7.72798 7.75675 7.94103 8.24415 8.70230 9.02390 9.16578 9.57444 11.02702 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.038362 B = 0.009645 C = 0.008300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.717371 B = 2902.352976 C = 3372.568208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.175 4.175 3 C 0.077 3.923 4 N -0.532 5.532 5 C 0.071 3.929 6 C 0.078 3.922 7 H 0.061 0.939 8 C -0.168 4.168 9 N -0.680 5.680 10 C 0.217 3.783 11 H 0.011 0.989 12 C -0.505 4.505 13 H 0.059 0.941 14 C 0.067 3.933 15 N -0.899 5.899 16 Si 0.898 3.102 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.284 1.284 20 C 0.066 3.934 21 H 0.091 0.909 22 H 0.093 0.907 23 H 0.108 0.892 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.035 0.965 28 H 0.068 0.932 29 H 0.035 0.965 30 H 0.045 0.955 31 H 0.363 0.637 32 H 0.263 0.737 33 H 0.030 0.970 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.972 2.191 -3.857 10.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.195 4.195 3 C -0.051 4.051 4 N -0.254 5.254 5 C -0.058 4.058 6 C -0.034 4.034 7 H 0.079 0.921 8 C -0.227 4.227 9 N -0.317 5.317 10 C 0.109 3.891 11 H 0.029 0.971 12 C -0.544 4.544 13 H 0.077 0.923 14 C -0.134 4.134 15 N -0.539 5.539 16 Si 0.726 3.274 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.061 4.061 21 H 0.109 0.891 22 H 0.111 0.889 23 H 0.126 0.874 24 H 0.096 0.904 25 H 0.089 0.911 26 H 0.076 0.924 27 H 0.053 0.947 28 H 0.087 0.913 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.187 0.813 32 H 0.072 0.928 33 H 0.049 0.951 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.029 2.224 -3.927 10.094 hybrid contribution 0.806 -0.753 0.206 1.122 sum -8.223 1.470 -3.721 9.145 Atomic orbital electron populations 1.23731 0.95882 1.01248 1.02736 1.23822 0.96654 1.00753 0.98253 1.21408 0.94687 0.93503 0.95482 1.62500 1.11861 1.50040 1.01029 1.22046 0.95310 0.98840 0.89584 1.21547 0.94773 0.91319 0.95761 0.92123 1.22341 1.00087 0.97743 1.02554 1.61159 1.16985 1.45459 1.08113 1.19061 0.89055 0.96163 0.84860 0.97144 1.21170 1.07772 1.15963 1.09543 0.92320 1.24967 0.97581 0.95763 0.95135 1.69695 1.33912 1.36927 1.13357 0.86453 0.81264 0.81676 0.78027 1.19832 1.21129 1.21012 1.22359 0.92008 0.91595 1.00172 0.89094 0.88892 0.87375 0.90389 0.91124 0.92368 0.94695 0.91266 0.94606 0.93617 0.81320 0.92751 0.95140 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.49 14.32 29.01 0.42 -2.08 16 2 C -0.18 -2.56 7.59 -36.03 -0.27 -2.84 16 3 C 0.08 1.18 5.84 -4.98 -0.03 1.15 16 4 N -0.53 -9.98 4.23 -235.91 -1.00 -10.98 16 5 C 0.07 1.30 4.65 -3.77 -0.02 1.29 16 6 C 0.08 1.58 3.69 -67.65 -0.25 1.33 16 7 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 8 C -0.17 -3.33 8.83 37.16 0.33 -3.01 16 9 N -0.68 -16.54 6.32 -100.82 -0.64 -17.17 16 10 C 0.22 5.47 2.17 -68.81 -0.15 5.32 16 11 H 0.01 0.31 6.35 -51.93 -0.33 -0.02 16 12 C -0.51 -13.86 8.76 -34.44 -0.30 -14.17 16 13 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 14 C 0.07 1.83 5.35 -17.82 -0.10 1.74 16 15 N -0.90 -25.14 11.50 55.43 0.64 -24.50 16 16 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 C 0.07 1.43 4.56 -3.77 -0.02 1.42 16 21 H 0.09 1.04 8.06 -52.49 -0.42 0.62 16 22 H 0.09 1.05 7.84 -52.49 -0.41 0.64 16 23 H 0.11 1.72 7.01 -52.49 -0.37 1.35 16 24 H 0.08 1.14 8.10 -51.93 -0.42 0.72 16 25 H 0.07 0.98 7.79 -51.93 -0.40 0.57 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.03 0.67 7.15 -51.93 -0.37 0.30 16 28 H 0.07 1.51 5.95 -51.93 -0.31 1.20 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.36 9.56 6.71 -39.29 -0.26 9.30 16 32 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.03 0.68 6.77 -51.93 -0.35 0.33 16 34 H 0.06 1.28 8.11 -51.92 -0.42 0.86 16 LS Contribution 267.13 15.07 4.03 4.03 Total: -1.00 -27.47 267.13 -7.69 -35.16 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -5.31 Total: 7.09 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: -0.39 Total: -9.83 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: -1.00 Total: -52.66 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -27.47 -7.69 -35.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218965781.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.139 kcal (2) G-P(sol) polarization free energy of solvation -27.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds