Wall clock time and date at job start Mon Mar 30 2020 03:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99903 * 2 1 4 4 N 1.46898 * 109.47056 * 124.99765 * 3 2 1 5 5 C 1.46951 * 111.00084 * 302.25105 * 4 3 2 6 6 C 1.53055 * 109.36409 * 183.18690 * 5 4 3 7 7 H 1.08994 * 109.48989 * 181.62732 * 6 5 4 8 8 C 1.53006 * 109.50537 * 61.57396 * 6 5 4 9 9 N 1.46955 * 109.36515 * 301.59971 * 6 5 4 10 10 C 1.46959 * 110.88332 * 59.31585 * 9 6 5 11 11 H 1.09002 * 109.50256 * 60.66076 * 10 9 6 12 12 C 1.50696 * 109.49117 * 180.71517 * 10 9 6 13 13 H 1.07994 * 120.00419 * 119.89208 * 12 10 9 14 14 C 1.37878 * 119.99878 * 299.89164 * 12 10 9 15 15 N 1.31521 * 120.00022 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 120.00125 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47103 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47503 * 120.00259 * 16 14 12 19 19 H 1.48504 * 109.46934 * 240.00143 * 16 14 12 20 20 C 1.46962 * 110.99774 * 66.04834 * 4 3 2 21 21 H 1.08000 * 119.99390 * 179.97438 * 1 2 3 22 22 H 1.07999 * 120.00108 * 0.02562 * 1 2 3 23 23 H 1.07995 * 120.00080 * 179.72973 * 2 1 3 24 24 H 1.09000 * 109.46979 * 245.00349 * 3 2 1 25 25 H 1.08997 * 109.47064 * 5.00286 * 3 2 1 26 26 H 1.09004 * 109.48930 * 303.14933 * 5 4 3 27 27 H 1.08998 * 109.49106 * 63.21967 * 5 4 3 28 28 H 1.09004 * 109.46980 * 300.09769 * 8 6 5 29 29 H 1.09000 * 109.47159 * 60.09813 * 8 6 5 30 30 H 1.09004 * 109.47130 * 180.10086 * 8 6 5 31 31 H 1.00905 * 111.00177 * 183.18835 * 9 6 5 32 32 H 0.96998 * 119.99827 * 179.97438 * 15 14 12 33 33 H 1.08996 * 109.48686 * 296.77965 * 20 4 3 34 34 H 1.09007 * 109.49016 * 56.82052 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 2.2837 1.1491 2.4066 6 6 3.2769 1.2626 3.5656 7 1 2.7556 1.0986 4.5086 8 6 3.9049 2.6578 3.5654 9 7 4.3305 0.2507 3.4052 10 6 5.0431 0.4335 2.1330 11 1 5.5108 1.4179 2.1161 12 6 6.1025 -0.6290 1.9930 13 1 6.0711 -1.3166 1.1609 14 6 7.1121 -0.7232 2.9273 15 7 7.1502 0.1139 3.9410 16 14 8.4258 -2.0397 2.7534 17 1 8.1583 -2.8483 1.5368 18 1 9.7592 -1.3964 2.6375 19 1 8.4040 -2.9216 3.9480 20 6 4.0498 0.3201 0.9742 21 1 -0.5399 -0.9354 -0.0004 22 1 -0.5400 0.9353 -0.0004 23 1 1.8500 -0.9352 0.0044 24 1 2.6213 1.4026 -0.9314 25 1 1.3586 2.1316 0.0896 26 1 1.5173 1.9177 2.5080 27 1 1.8162 0.1646 2.4234 28 1 4.4255 2.8218 2.6219 29 1 3.1233 3.4081 3.6844 30 1 4.6135 2.7374 4.3899 31 1 4.9712 0.2692 4.1845 32 1 7.8603 0.0474 4.5985 33 1 3.6024 -0.6739 0.9746 34 1 4.5709 0.4839 0.0308 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218965781.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:30 Heat of formation + Delta-G solvation = 6.966448 kcal Electronic energy + Delta-G solvation = -14623.020851 eV Core-core repulsion = 12362.321492 eV Total energy + Delta-G solvation = -2260.699359 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.30598 -36.78439 -34.82457 -33.26735 -32.07395 -28.38742 -27.62932 -27.01939 -23.78942 -23.09528 -20.93539 -19.19592 -18.69762 -17.23125 -16.35813 -16.10500 -15.72315 -15.54563 -15.40584 -14.58822 -14.41410 -14.04724 -13.66649 -13.21656 -12.90127 -12.80018 -12.52069 -12.45744 -12.27499 -12.09333 -12.08491 -11.53871 -11.20641 -10.99455 -10.62044 -10.29234 -9.15137 -8.68416 -8.15663 -6.25909 1.37210 1.41247 1.43508 1.54687 2.42896 3.10985 3.23322 3.98665 4.01236 4.17706 4.22876 4.36935 4.45677 4.56988 4.67605 4.73540 4.84051 4.88292 4.91388 5.01039 5.09462 5.17916 5.24704 5.42236 5.60887 5.70074 5.79261 5.83828 6.06647 6.29106 6.36901 6.66997 7.02909 7.16830 7.45376 8.93407 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.038362 B = 0.009645 C = 0.008300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.717371 B = 2902.352976 C = 3372.568208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.202 4.202 3 C 0.080 3.920 4 N -0.538 5.538 5 C 0.078 3.922 6 C 0.069 3.931 7 H 0.076 0.924 8 C -0.155 4.155 9 N -0.690 5.690 10 C 0.220 3.780 11 H -0.025 1.025 12 C -0.531 4.531 13 H 0.053 0.947 14 C 0.022 3.978 15 N -0.920 5.920 16 Si 0.961 3.039 17 H -0.270 1.270 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.081 3.919 21 H 0.102 0.898 22 H 0.113 0.887 23 H 0.087 0.913 24 H 0.079 0.921 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.028 0.972 28 H 0.044 0.956 29 H 0.068 0.932 30 H 0.028 0.972 31 H 0.347 0.653 32 H 0.264 0.736 33 H 0.020 0.980 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.584 2.354 -4.242 11.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.222 4.222 3 C -0.047 4.047 4 N -0.261 5.261 5 C -0.050 4.050 6 C -0.042 4.042 7 H 0.094 0.906 8 C -0.214 4.214 9 N -0.325 5.325 10 C 0.111 3.889 11 H -0.007 1.007 12 C -0.570 4.570 13 H 0.071 0.929 14 C -0.177 4.177 15 N -0.561 5.561 16 Si 0.787 3.213 17 H -0.194 1.194 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.047 4.047 21 H 0.121 0.879 22 H 0.132 0.868 23 H 0.105 0.895 24 H 0.098 0.902 25 H 0.113 0.887 26 H 0.107 0.893 27 H 0.046 0.954 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.047 0.953 31 H 0.168 0.832 32 H 0.074 0.926 33 H 0.038 0.962 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.667 2.394 -4.331 11.759 hybrid contribution 1.219 -0.766 0.326 1.476 sum -9.448 1.628 -4.005 10.390 Atomic orbital electron populations 1.23971 0.95024 1.02801 0.99004 1.23597 0.97394 0.99489 1.01693 1.21463 0.94470 0.94768 0.94041 1.62442 1.12521 1.48604 1.02549 1.22009 0.94976 0.99561 0.88493 1.21766 0.94179 0.90579 0.97674 0.90578 1.22176 1.00347 0.98386 1.00494 1.61111 1.16979 1.47398 1.06992 1.18906 0.89710 0.93561 0.86683 1.00715 1.21500 1.09206 1.16622 1.09693 0.92910 1.25708 0.99517 0.97684 0.94809 1.69808 1.34444 1.38047 1.13772 0.85464 0.78672 0.79136 0.78007 1.19442 1.20605 1.20634 1.22017 0.92289 0.91981 0.98400 0.87927 0.86838 0.89479 0.90227 0.88749 0.89250 0.95369 0.93666 0.91344 0.95277 0.83152 0.92642 0.96219 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.69 14.32 67.78 0.97 -2.72 16 2 C -0.20 -5.52 7.59 25.64 0.19 -5.33 16 3 C 0.08 2.27 5.84 85.56 0.50 2.77 16 4 N -0.54 -19.62 4.23 -900.28 -3.81 -23.43 16 5 C 0.08 2.71 4.65 86.31 0.40 3.12 16 6 C 0.07 2.75 3.69 44.93 0.17 2.92 16 7 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 8 C -0.15 -6.05 8.83 71.98 0.64 -5.41 16 9 N -0.69 -34.10 6.32 -472.88 -2.99 -37.09 16 10 C 0.22 11.41 2.17 44.17 0.10 11.51 16 11 H -0.02 -1.43 6.35 -2.39 -0.02 -1.44 16 12 C -0.53 -29.90 8.76 25.60 0.22 -29.68 16 13 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 14 C 0.02 1.22 5.35 84.65 0.45 1.68 16 15 N -0.92 -52.54 11.50 21.45 0.25 -52.29 16 16 Si 0.96 44.04 29.54 68.60 2.03 46.07 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 20 C 0.08 3.58 4.56 86.31 0.39 3.97 16 21 H 0.10 2.00 8.06 -2.91 -0.02 1.98 16 22 H 0.11 2.03 7.84 -2.91 -0.02 2.00 16 23 H 0.09 2.74 7.01 -2.91 -0.02 2.72 16 24 H 0.08 2.21 8.10 -2.39 -0.02 2.19 16 25 H 0.09 2.25 7.79 -2.39 -0.02 2.23 16 26 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 27 H 0.03 1.03 7.15 -2.39 -0.02 1.01 16 28 H 0.04 1.98 5.95 -2.39 -0.01 1.96 16 29 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.35 18.78 6.71 -89.69 -0.60 18.18 16 32 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 33 H 0.02 0.90 6.77 -2.39 -0.02 0.88 16 34 H 0.06 2.51 8.11 -2.38 -0.02 2.49 16 Total: -1.00 -59.67 267.13 -0.03 -59.70 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 0.46 Total: 24.20 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: 4.03 Total: -17.17 kcal Atomic # 7 Polarization: -106.25 SS G_CDS: -6.56 Total: -112.80 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -59.67 -0.03 -59.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218965781.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.670 kcal (2) G-P(sol) polarization free energy of solvation -59.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds