Wall clock time and date at job start Mon Mar 30 2020 03:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.49392 * 2 1 4 4 C 1.53049 * 109.50851 * 239.94209 * 2 1 3 5 5 N 1.46962 * 109.36644 * 181.62299 * 4 2 1 6 6 C 1.46956 * 110.87937 * 59.32238 * 5 4 2 7 7 C 1.53049 * 109.36251 * 300.67994 * 6 5 4 8 8 H 1.09002 * 109.49286 * 298.43633 * 7 6 5 9 9 C 1.50699 * 109.49005 * 178.36970 * 7 6 5 10 10 H 1.08003 * 120.00332 * 240.10736 * 9 7 6 11 11 C 1.37878 * 120.00093 * 60.10937 * 9 7 6 12 12 N 1.31513 * 119.99619 * 359.97438 * 11 9 7 13 13 Si 1.86799 * 120.00155 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47301 * 359.97438 * 13 11 9 15 15 H 1.48506 * 109.47178 * 119.99881 * 13 11 9 16 16 H 1.48502 * 109.46868 * 239.99516 * 13 11 9 17 17 N 1.46956 * 109.48614 * 120.04327 * 2 1 3 18 18 C 1.46900 * 111.00068 * 303.17226 * 17 2 1 19 19 C 1.53008 * 117.51332 * 86.75459 * 18 17 2 20 20 C 1.53004 * 117.49908 * 155.38173 * 18 17 2 21 21 H 1.08999 * 109.47489 * 306.31072 * 1 2 3 22 22 H 1.09008 * 109.47012 * 66.31032 * 1 2 3 23 23 H 1.08997 * 109.47214 * 186.30256 * 1 2 3 24 24 H 1.09002 * 109.49286 * 301.58914 * 4 2 1 25 25 H 1.08996 * 109.48784 * 61.65590 * 4 2 1 26 26 H 1.00899 * 110.99736 * 295.45445 * 5 4 2 27 27 H 1.08994 * 109.49292 * 60.64512 * 6 5 4 28 28 H 1.08996 * 109.49080 * 180.69320 * 6 5 4 29 29 H 0.97001 * 120.00123 * 179.97438 * 12 11 9 30 30 H 1.08997 * 115.55331 * 301.06136 * 18 17 2 31 31 H 1.09000 * 117.49368 * 214.97316 * 19 18 17 32 32 H 1.09000 * 117.49676 * 359.97438 * 19 18 17 33 33 H 1.08996 * 117.49957 * 359.97438 * 20 18 17 34 34 H 1.09000 * 117.49977 * 145.00460 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0411 -0.7226 -1.2486 5 7 3.5102 -0.7548 -1.2260 6 6 4.0004 -1.4484 -0.0267 7 6 3.4893 -0.7259 1.2219 8 1 3.8752 0.2935 1.2358 9 6 3.9571 -1.4578 2.4533 10 1 3.2357 -1.8592 3.1498 11 6 5.3061 -1.6152 2.6909 12 7 6.1845 -1.1269 1.8427 13 14 5.8860 -2.5232 4.2170 14 1 4.7090 -2.9716 5.0034 15 1 6.6919 -3.7038 3.8142 16 1 6.7185 -1.6154 5.0466 17 7 2.0202 -0.6936 1.1993 18 6 1.4884 -0.0737 2.4203 19 6 0.1253 -0.5553 2.9215 20 6 1.3988 -0.9460 3.6741 21 1 -0.3634 0.6085 0.8281 22 1 -0.3633 0.4129 -0.9411 23 1 -0.3633 -1.0214 0.1128 24 1 1.6552 -1.7419 -1.2625 25 1 1.7027 -0.1931 -2.1392 26 1 3.8932 0.1766 -1.2870 27 1 3.6367 -2.4759 -0.0266 28 1 5.0903 -1.4485 -0.0266 29 1 7.1336 -1.2373 2.0100 30 1 1.7311 0.9801 2.5566 31 1 -0.5286 0.1818 3.3875 32 1 -0.3772 -1.3319 2.3449 33 1 1.7341 -1.9799 3.5929 34 1 1.5827 -0.4661 4.6353 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218965956.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:48 Heat of formation + Delta-G solvation = 40.165552 kcal Electronic energy + Delta-G solvation = -14931.668298 eV Core-core repulsion = 12672.408560 eV Total energy + Delta-G solvation = -2259.259738 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.85113 -35.78898 -33.34397 -31.94494 -30.64649 -26.68970 -25.41246 -23.15615 -21.66190 -20.85473 -20.24665 -19.18078 -16.50236 -15.40626 -14.82510 -14.52044 -14.30556 -13.94742 -13.60456 -12.89511 -12.57858 -12.01190 -11.73246 -11.58843 -11.35412 -10.98073 -10.95040 -10.74562 -10.53348 -10.31555 -10.02088 -9.89762 -9.53085 -9.22131 -8.97940 -8.49417 -7.46584 -7.19383 -6.03728 -4.04920 3.28559 3.36943 3.40316 4.38342 4.56823 4.68340 5.22370 5.32441 5.49931 5.64741 5.68392 5.71314 5.82958 5.99488 6.01971 6.15285 6.28453 6.33394 6.42349 6.50675 6.66456 6.69288 6.80314 6.89890 6.97007 7.23959 7.67309 7.79522 7.93724 8.10253 8.18765 8.37600 8.59527 9.02113 9.59039 11.04379 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.030547 B = 0.013569 C = 0.009872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.393030 B = 2063.013864 C = 2835.694536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.045 3.955 3 H 0.024 0.976 4 C 0.068 3.932 5 N -0.699 5.699 6 C 0.065 3.935 7 C 0.190 3.810 8 H -0.005 1.005 9 C -0.506 4.506 10 H 0.080 0.920 11 C 0.058 3.942 12 N -0.897 5.897 13 Si 0.895 3.105 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.286 1.286 17 N -0.501 5.501 18 C 0.037 3.963 19 C -0.188 4.188 20 C -0.149 4.149 21 H 0.052 0.948 22 H 0.046 0.954 23 H 0.059 0.941 24 H 0.071 0.929 25 H 0.061 0.939 26 H 0.327 0.673 27 H 0.055 0.945 28 H 0.107 0.893 29 H 0.260 0.740 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.510 1.981 -1.354 8.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.065 4.065 3 H 0.041 0.959 4 C -0.062 4.062 5 N -0.325 5.325 6 C -0.064 4.064 7 C 0.082 3.918 8 H 0.012 0.988 9 C -0.545 4.545 10 H 0.098 0.902 11 C -0.143 4.143 12 N -0.536 5.536 13 Si 0.723 3.277 14 H -0.197 1.197 15 H -0.211 1.211 16 H -0.213 1.213 17 N -0.227 5.227 18 C -0.072 4.072 19 C -0.226 4.226 20 C -0.186 4.186 21 H 0.072 0.928 22 H 0.065 0.935 23 H 0.078 0.922 24 H 0.090 0.910 25 H 0.079 0.921 26 H 0.143 0.857 27 H 0.073 0.927 28 H 0.125 0.875 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.126 0.874 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.405 0.923 -1.830 8.651 hybrid contribution 0.586 1.178 1.601 2.072 sum -7.819 2.102 -0.230 8.100 Atomic orbital electron populations 1.21816 0.95289 1.01956 1.00422 1.22308 0.95251 0.95431 0.93535 0.95852 1.22053 0.89378 1.00390 0.94406 1.60974 1.06069 1.22457 1.43030 1.22343 1.02452 0.96523 0.85097 1.19892 0.80364 0.95211 0.96289 0.98762 1.21539 0.91755 1.34863 1.06348 0.90191 1.24963 0.96824 0.95806 0.96733 1.69872 1.01489 1.46296 1.35979 0.86478 0.78721 0.79461 0.83001 1.19708 1.21058 1.21277 1.62078 1.12090 1.50201 0.98323 1.21870 0.97956 0.94809 0.92602 1.23100 0.91029 1.03606 1.04846 1.22986 0.99047 1.01900 0.94649 0.92846 0.93454 0.92196 0.91023 0.92094 0.85711 0.92690 0.87482 0.93014 0.91737 0.90276 0.89013 0.87438 0.90023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 8.09 37.16 0.30 -1.77 16 2 C 0.05 0.84 2.56 -67.66 -0.17 0.67 16 3 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 4 C 0.07 1.24 6.00 -3.76 -0.02 1.22 16 5 N -0.70 -14.39 6.91 -113.64 -0.79 -15.18 16 6 C 0.06 1.56 5.76 -3.77 -0.02 1.54 16 7 C 0.19 4.72 1.94 -68.81 -0.13 4.58 16 8 H -0.01 -0.14 8.14 -51.93 -0.42 -0.57 16 9 C -0.51 -13.46 7.88 -34.44 -0.27 -13.73 16 10 H 0.08 2.08 3.96 -52.48 -0.21 1.88 16 11 C 0.06 1.56 5.30 -17.82 -0.09 1.46 16 12 N -0.90 -25.15 11.34 55.43 0.63 -24.52 16 13 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 14 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 17 N -0.50 -10.71 4.46 -212.06 -0.95 -11.66 16 18 C 0.04 0.73 4.02 -67.71 -0.27 0.46 16 19 C -0.19 -3.09 8.44 -26.72 -0.23 -3.31 16 20 C -0.15 -2.81 8.63 -26.73 -0.23 -3.04 16 21 H 0.05 0.79 6.42 -51.93 -0.33 0.46 16 22 H 0.05 0.62 8.14 -51.92 -0.42 0.19 16 23 H 0.06 0.92 7.74 -51.93 -0.40 0.52 16 24 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.33 6.55 8.89 -39.29 -0.35 6.20 16 27 H 0.05 1.39 8.14 -51.93 -0.42 0.96 16 28 H 0.11 2.86 6.13 -51.93 -0.32 2.55 16 29 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 31 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.09 1.50 7.51 -51.93 -0.39 1.11 16 33 H 0.11 2.23 6.29 -51.93 -0.33 1.91 16 34 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 260.72 15.07 3.93 3.93 Total: -1.00 -27.29 260.72 -8.61 -35.90 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -5.27 Total: 7.36 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -1.14 Total: -11.93 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -1.10 Total: -51.36 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -27.29 -8.61 -35.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218965956.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.064 kcal (2) G-P(sol) polarization free energy of solvation -27.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds