Wall clock time and date at job start Mon Mar 30 2020 03:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.49392 * 2 1 4 4 C 1.53049 * 109.50851 * 239.94209 * 2 1 3 5 5 N 1.46962 * 109.36644 * 181.62299 * 4 2 1 6 6 C 1.46956 * 110.87937 * 59.32238 * 5 4 2 7 7 C 1.53049 * 109.36251 * 300.67994 * 6 5 4 8 8 H 1.09002 * 109.49286 * 298.43633 * 7 6 5 9 9 C 1.50699 * 109.49005 * 178.36970 * 7 6 5 10 10 H 1.08003 * 120.00332 * 240.10736 * 9 7 6 11 11 C 1.37878 * 120.00093 * 60.10937 * 9 7 6 12 12 N 1.31513 * 119.99619 * 359.97438 * 11 9 7 13 13 Si 1.86799 * 120.00155 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47301 * 359.97438 * 13 11 9 15 15 H 1.48506 * 109.47178 * 119.99881 * 13 11 9 16 16 H 1.48502 * 109.46868 * 239.99516 * 13 11 9 17 17 N 1.46956 * 109.48614 * 120.04327 * 2 1 3 18 18 C 1.46900 * 111.00068 * 303.17226 * 17 2 1 19 19 C 1.53008 * 117.51332 * 86.75459 * 18 17 2 20 20 C 1.53004 * 117.49908 * 155.38173 * 18 17 2 21 21 H 1.08999 * 109.47489 * 306.31072 * 1 2 3 22 22 H 1.09008 * 109.47012 * 66.31032 * 1 2 3 23 23 H 1.08997 * 109.47214 * 186.30256 * 1 2 3 24 24 H 1.09002 * 109.49286 * 301.58914 * 4 2 1 25 25 H 1.08996 * 109.48784 * 61.65590 * 4 2 1 26 26 H 1.00899 * 110.99736 * 295.45445 * 5 4 2 27 27 H 1.08994 * 109.49292 * 60.64512 * 6 5 4 28 28 H 1.08996 * 109.49080 * 180.69320 * 6 5 4 29 29 H 0.97001 * 120.00123 * 179.97438 * 12 11 9 30 30 H 1.08997 * 115.55331 * 301.06136 * 18 17 2 31 31 H 1.09000 * 117.49368 * 214.97316 * 19 18 17 32 32 H 1.09000 * 117.49676 * 359.97438 * 19 18 17 33 33 H 1.08996 * 117.49957 * 359.97438 * 20 18 17 34 34 H 1.09000 * 117.49977 * 145.00460 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0411 -0.7226 -1.2486 5 7 3.5102 -0.7548 -1.2260 6 6 4.0004 -1.4484 -0.0267 7 6 3.4893 -0.7259 1.2219 8 1 3.8752 0.2935 1.2358 9 6 3.9571 -1.4578 2.4533 10 1 3.2357 -1.8592 3.1498 11 6 5.3061 -1.6152 2.6909 12 7 6.1845 -1.1269 1.8427 13 14 5.8860 -2.5232 4.2170 14 1 4.7090 -2.9716 5.0034 15 1 6.6919 -3.7038 3.8142 16 1 6.7185 -1.6154 5.0466 17 7 2.0202 -0.6936 1.1993 18 6 1.4884 -0.0737 2.4203 19 6 0.1253 -0.5553 2.9215 20 6 1.3988 -0.9460 3.6741 21 1 -0.3634 0.6085 0.8281 22 1 -0.3633 0.4129 -0.9411 23 1 -0.3633 -1.0214 0.1128 24 1 1.6552 -1.7419 -1.2625 25 1 1.7027 -0.1931 -2.1392 26 1 3.8932 0.1766 -1.2870 27 1 3.6367 -2.4759 -0.0266 28 1 5.0903 -1.4485 -0.0266 29 1 7.1336 -1.2373 2.0100 30 1 1.7311 0.9801 2.5566 31 1 -0.5286 0.1818 3.3875 32 1 -0.3772 -1.3319 2.3449 33 1 1.7341 -1.9799 3.5929 34 1 1.5827 -0.4661 4.6353 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218965956.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:48 Heat of formation + Delta-G solvation = 20.601203 kcal Electronic energy + Delta-G solvation = -14932.516672 eV Core-core repulsion = 12672.408560 eV Total energy + Delta-G solvation = -2260.108112 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.48746 -37.34665 -35.25230 -33.56228 -32.42245 -28.38162 -27.18450 -24.87923 -23.12774 -22.53113 -21.89042 -20.83676 -18.43792 -17.14161 -16.62931 -16.06646 -15.89602 -15.67747 -15.29842 -14.62261 -14.21056 -13.62169 -13.38891 -13.16581 -12.88471 -12.69686 -12.52858 -12.40856 -12.18929 -11.88132 -11.79762 -11.69701 -11.25954 -10.94683 -10.65529 -10.48465 -9.19627 -8.93402 -8.10525 -6.17870 1.39916 1.42641 1.53371 2.42470 3.03741 3.14532 3.19315 3.63499 4.08257 4.17468 4.23541 4.28537 4.41768 4.50966 4.64338 4.75689 4.80857 4.86846 4.97593 5.01444 5.10351 5.16694 5.20621 5.29083 5.40335 5.47248 5.70631 5.82095 6.04210 6.29440 6.44958 6.58070 6.75203 6.97676 7.49566 8.96821 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.030547 B = 0.013569 C = 0.009872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.393030 B = 2063.013864 C = 2835.694536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.041 3.959 3 H 0.011 0.989 4 C 0.069 3.931 5 N -0.697 5.697 6 C 0.080 3.920 7 C 0.198 3.802 8 H -0.049 1.049 9 C -0.519 4.519 10 H 0.085 0.915 11 C 0.009 3.991 12 N -0.925 5.925 13 Si 0.955 3.045 14 H -0.263 1.263 15 H -0.283 1.283 16 H -0.286 1.286 17 N -0.505 5.505 18 C 0.008 3.992 19 C -0.143 4.143 20 C -0.162 4.162 21 H 0.057 0.943 22 H 0.075 0.925 23 H 0.060 0.940 24 H 0.068 0.932 25 H 0.096 0.904 26 H 0.330 0.670 27 H 0.040 0.960 28 H 0.077 0.923 29 H 0.259 0.741 30 H 0.053 0.947 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.666 1.932 -1.174 10.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.069 4.069 3 H 0.029 0.971 4 C -0.061 4.061 5 N -0.324 5.324 6 C -0.050 4.050 7 C 0.089 3.911 8 H -0.031 1.031 9 C -0.557 4.557 10 H 0.102 0.898 11 C -0.189 4.189 12 N -0.566 5.566 13 Si 0.782 3.218 14 H -0.187 1.187 15 H -0.209 1.209 16 H -0.212 1.212 17 N -0.230 5.230 18 C -0.101 4.101 19 C -0.180 4.180 20 C -0.199 4.199 21 H 0.076 0.924 22 H 0.093 0.907 23 H 0.079 0.921 24 H 0.087 0.913 25 H 0.114 0.886 26 H 0.146 0.854 27 H 0.058 0.942 28 H 0.095 0.905 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.129 0.871 32 H 0.117 0.883 33 H 0.104 0.896 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.592 0.878 -1.655 10.757 hybrid contribution 1.221 1.237 1.507 2.300 sum -9.372 2.114 -0.148 9.609 Atomic orbital electron populations 1.21732 0.92025 1.02380 1.02248 1.22447 0.97804 0.94306 0.92325 0.97134 1.22185 0.87344 1.00773 0.95804 1.60899 1.08130 1.22454 1.40898 1.21931 1.00592 0.95967 0.86483 1.19642 0.82903 0.92452 0.96072 1.03138 1.21915 0.92100 1.34603 1.07110 0.89768 1.25726 0.97099 0.96674 0.99395 1.70014 1.01563 1.47463 1.37519 0.85531 0.78316 0.78180 0.79800 1.18749 1.20920 1.21188 1.62065 1.09577 1.51195 1.00189 1.21958 1.01379 0.94281 0.92524 1.23130 0.89502 1.03228 1.02141 1.22945 1.01508 1.00496 0.94933 0.92361 0.90654 0.92065 0.91329 0.88596 0.85395 0.94186 0.90526 0.93178 0.92951 0.87072 0.88318 0.89623 0.88992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.38 8.09 71.98 0.58 -2.80 16 2 C 0.04 1.47 2.56 44.92 0.11 1.58 16 3 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 4 C 0.07 2.37 6.00 86.31 0.52 2.89 16 5 N -0.70 -28.75 6.91 -513.44 -3.55 -32.30 16 6 C 0.08 3.99 5.76 86.31 0.50 4.49 16 7 C 0.20 10.12 1.94 44.17 0.09 10.20 16 8 H -0.05 -2.86 8.14 -2.39 -0.02 -2.88 16 9 C -0.52 -28.17 7.88 25.60 0.20 -27.97 16 10 H 0.08 4.43 3.96 -2.91 -0.01 4.42 16 11 C 0.01 0.50 5.30 84.66 0.45 0.95 16 12 N -0.92 -53.54 11.34 21.45 0.24 -53.30 16 13 Si 0.96 43.86 29.54 68.60 2.03 45.89 16 14 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 15 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 16 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 17 N -0.50 -21.45 4.46 -824.82 -3.68 -25.13 16 18 C 0.01 0.30 4.02 44.92 0.18 0.48 16 19 C -0.14 -4.23 8.44 30.60 0.26 -3.97 16 20 C -0.16 -5.90 8.63 30.60 0.26 -5.64 16 21 H 0.06 1.51 6.42 -2.39 -0.02 1.50 16 22 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 23 H 0.06 1.65 7.74 -2.39 -0.02 1.63 16 24 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 25 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 26 H 0.33 13.35 8.89 -89.69 -0.80 12.55 16 27 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.08 4.28 6.13 -2.39 -0.01 4.27 16 29 H 0.26 14.35 8.31 -92.71 -0.77 13.57 16 30 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 32 H 0.10 2.84 7.51 -2.39 -0.02 2.83 16 33 H 0.09 3.52 6.29 -2.39 -0.02 3.50 16 34 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 Total: -1.00 -60.09 260.72 -1.52 -61.61 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.29 Total: 23.02 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: 3.15 Total: -19.79 kcal Atomic # 7 Polarization: -103.74 SS G_CDS: -6.98 Total: -110.72 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -60.09 -1.52 -61.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218965956.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.210 kcal (2) G-P(sol) polarization free energy of solvation -60.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds