Wall clock time and date at job start Mon Mar 30 2020 03:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.51330 * 2 1 4 4 C 1.53052 * 109.49028 * 120.05950 * 2 1 3 5 5 N 1.46959 * 109.36640 * 61.56340 * 4 2 1 6 6 C 1.46956 * 110.87918 * 59.32070 * 5 4 2 7 7 C 1.53045 * 109.36580 * 300.68226 * 6 5 4 8 8 H 1.09003 * 109.49130 * 298.40875 * 7 6 5 9 9 C 1.50707 * 109.48943 * 178.36834 * 7 6 5 10 10 H 1.08000 * 119.99591 * 268.69738 * 9 7 6 11 11 C 1.37871 * 119.99806 * 88.68966 * 9 7 6 12 12 N 1.31513 * 120.00378 * 353.60964 * 11 9 7 13 13 Si 1.86800 * 119.99888 * 173.33031 * 11 9 7 14 14 H 1.48506 * 109.47172 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47131 * 119.99883 * 13 11 9 16 16 H 1.48502 * 109.47222 * 240.00356 * 13 11 9 17 17 N 1.46958 * 109.48995 * 239.94701 * 2 1 3 18 18 C 1.46903 * 111.00072 * 63.22254 * 17 2 1 19 19 C 1.53000 * 117.49976 * 119.94754 * 18 17 2 20 20 C 1.52997 * 117.49619 * 51.28588 * 18 17 2 21 21 H 1.08998 * 109.46772 * 299.94481 * 1 2 3 22 22 H 1.09004 * 109.46712 * 59.94305 * 1 2 3 23 23 H 1.09001 * 109.46971 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.48725 * 301.59849 * 4 2 1 25 25 H 1.08993 * 109.49142 * 181.53338 * 4 2 1 26 26 H 1.00901 * 110.99704 * 295.45474 * 5 4 2 27 27 H 1.09002 * 109.48436 * 180.71134 * 6 5 4 28 28 H 1.08998 * 109.48382 * 60.65011 * 6 5 4 29 29 H 0.96999 * 120.00161 * 354.26771 * 12 11 9 30 30 H 1.09003 * 115.54538 * 265.62179 * 18 17 2 31 31 H 1.08998 * 117.49649 * 0.02562 * 19 18 17 32 32 H 1.09001 * 117.49632 * 145.02226 * 19 18 17 33 33 H 1.08999 * 117.49735 * 214.97875 * 20 18 17 34 34 H 1.08996 * 117.50073 * 0.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0406 -0.7227 1.2488 5 7 1.5809 -2.1183 1.2264 6 6 2.0711 -2.8121 0.0272 7 6 1.5605 -2.0894 -1.2215 8 1 0.4709 -2.1135 -1.2357 9 6 2.0945 -2.7750 -2.4528 10 1 3.0265 -2.4494 -2.8908 11 6 1.3933 -3.8179 -3.0200 12 7 0.3266 -4.2972 -2.4184 13 14 1.9540 -4.5449 -4.6468 14 1 3.1678 -3.8297 -5.1165 15 1 2.2683 -5.9846 -4.4635 16 1 0.8721 -4.3986 -5.6535 17 7 2.0203 -0.6938 -1.1991 18 6 1.6135 0.0142 -2.4203 19 6 2.7217 0.5207 -3.3457 20 6 1.9155 1.5118 -2.5024 21 1 -0.3633 0.5130 0.8905 22 1 -0.3633 0.5147 -0.8895 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6544 -0.2269 2.1393 25 1 3.1302 -0.6990 1.2627 26 1 0.5750 -2.1687 1.2874 27 1 1.7071 -3.8395 0.0272 28 1 3.1611 -2.8121 0.0273 29 1 0.0806 -3.9747 -1.5373 30 1 0.6929 -0.3398 -2.8843 31 1 3.7525 0.3282 -3.0486 32 1 2.5299 0.5003 -4.4185 33 1 1.1938 2.1431 -3.0209 34 1 2.4164 1.9717 -1.6506 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218965987.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:51 Heat of formation + Delta-G solvation = 31.810663 kcal Electronic energy + Delta-G solvation = -15023.296852 eV Core-core repulsion = 12763.674819 eV Total energy + Delta-G solvation = -2259.622033 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.24549 -35.96572 -33.47835 -31.95938 -30.31366 -26.77144 -25.09780 -23.70731 -22.08782 -21.25740 -20.38238 -18.36347 -17.07950 -15.71632 -14.73669 -14.54658 -14.49015 -13.76960 -13.64052 -13.51892 -12.50339 -12.33908 -12.05329 -11.43457 -11.18953 -11.02411 -10.88145 -10.81299 -10.66381 -10.54121 -10.13690 -10.06106 -9.76368 -9.31909 -8.78872 -8.54418 -7.63310 -7.22413 -6.38778 -4.09394 3.42952 3.44922 3.60279 4.43170 4.48884 4.60935 5.02138 5.31626 5.48134 5.50361 5.52471 5.55701 5.72704 5.91947 5.94682 6.05591 6.10622 6.23560 6.32242 6.40709 6.42539 6.58246 6.59172 6.69688 6.74490 6.85160 7.29732 7.54496 7.86242 7.97146 8.07830 8.36023 8.60029 8.85058 9.60988 10.97545 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.028346 B = 0.013911 C = 0.010564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.570241 B = 2012.353253 C = 2650.000096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.040 3.960 3 H 0.071 0.929 4 C 0.069 3.931 5 N -0.697 5.697 6 C 0.067 3.933 7 C 0.169 3.831 8 H 0.010 0.990 9 C -0.574 4.574 10 H 0.058 0.942 11 C 0.020 3.980 12 N -0.914 5.914 13 Si 1.070 2.930 14 H -0.288 1.288 15 H -0.288 1.288 16 H -0.288 1.288 17 N -0.497 5.497 18 C 0.057 3.943 19 C -0.160 4.160 20 C -0.201 4.201 21 H 0.049 0.951 22 H 0.053 0.947 23 H 0.057 0.943 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.329 0.671 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.268 0.732 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.266 8.344 2.689 8.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.070 4.070 3 H 0.089 0.911 4 C -0.061 4.061 5 N -0.325 5.325 6 C -0.062 4.062 7 C 0.061 3.939 8 H 0.028 0.972 9 C -0.614 4.614 10 H 0.076 0.924 11 C -0.184 4.184 12 N -0.550 5.550 13 Si 0.899 3.101 14 H -0.214 1.214 15 H -0.215 1.215 16 H -0.215 1.215 17 N -0.221 5.221 18 C -0.052 4.052 19 C -0.198 4.198 20 C -0.239 4.239 21 H 0.068 0.932 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.146 0.854 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.914 6.969 1.975 7.492 hybrid contribution -1.099 1.550 0.342 1.930 sum 0.815 8.519 2.317 8.866 Atomic orbital electron populations 1.22429 0.98407 1.02012 1.01169 1.22438 0.92576 0.98624 0.93386 0.91067 1.21993 1.00627 0.88679 0.94842 1.60901 1.15777 1.13553 1.42315 1.22377 1.00183 0.97202 0.86449 1.20143 0.94056 0.83789 0.95868 0.97227 1.21841 1.10057 1.17763 1.11692 0.92379 1.25801 0.94120 0.94730 1.03747 1.70759 1.25152 1.43068 1.16020 0.83529 0.75507 0.75949 0.75118 1.21370 1.21490 1.21460 1.62249 1.58221 1.03183 0.98465 1.21926 0.97517 0.91288 0.94448 1.22880 0.97881 1.02585 0.96410 1.23111 1.04522 0.93039 1.03203 0.93188 0.92782 0.92393 0.91720 0.90958 0.85428 0.91283 0.91617 0.92128 0.89992 0.88950 0.89747 0.89891 0.89352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.08 8.31 37.16 0.31 -2.77 16 2 C 0.04 0.72 2.76 -67.65 -0.19 0.53 16 3 H 0.07 1.18 6.54 -51.93 -0.34 0.84 16 4 C 0.07 1.19 6.21 -3.76 -0.02 1.16 16 5 N -0.70 -13.37 6.83 -113.64 -0.78 -14.14 16 6 C 0.07 1.52 5.91 -3.77 -0.02 1.50 16 7 C 0.17 4.06 1.13 -68.81 -0.08 3.98 16 8 H 0.01 0.27 5.17 -51.93 -0.27 0.00 16 9 C -0.57 -15.47 7.56 -34.44 -0.26 -15.73 16 10 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16 11 C 0.02 0.56 5.45 -17.82 -0.10 0.46 16 12 N -0.91 -26.64 13.55 55.43 0.75 -25.89 16 13 Si 1.07 24.99 29.91 -169.99 -5.08 19.90 16 14 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 16 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 17 N -0.50 -10.48 4.63 -212.06 -0.98 -11.46 16 18 C 0.06 1.16 3.21 -67.71 -0.22 0.94 16 19 C -0.16 -2.90 10.46 -26.69 -0.28 -3.18 16 20 C -0.20 -3.27 9.71 -26.69 -0.26 -3.53 16 21 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.05 0.93 7.30 -51.93 -0.38 0.55 16 23 H 0.06 1.09 5.10 -51.93 -0.26 0.83 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.33 6.11 7.27 -39.29 -0.29 5.82 16 27 H 0.07 1.68 7.70 -51.93 -0.40 1.28 16 28 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 29 H 0.27 7.75 6.39 -40.82 -0.26 7.49 16 30 H 0.08 1.85 8.04 -51.93 -0.42 1.43 16 31 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 32 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.09 1.38 6.96 -51.93 -0.36 1.02 16 LS Contribution 262.23 15.07 3.95 3.95 Total: -1.00 -28.04 262.23 -8.40 -36.43 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -5.14 Total: 7.84 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: -1.11 Total: -16.64 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: -1.01 Total: -51.50 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.08 Total: 19.90 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.04 -8.40 -36.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218965987.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.245 kcal (2) G-P(sol) polarization free energy of solvation -28.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds