Wall clock time and date at job start Mon Mar 30 2020 03:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.51330 * 2 1 4 4 C 1.53052 * 109.49028 * 120.05950 * 2 1 3 5 5 N 1.46959 * 109.36640 * 61.56340 * 4 2 1 6 6 C 1.46956 * 110.87918 * 59.32070 * 5 4 2 7 7 C 1.53045 * 109.36580 * 300.68226 * 6 5 4 8 8 H 1.09003 * 109.49130 * 298.40875 * 7 6 5 9 9 C 1.50707 * 109.48943 * 178.36834 * 7 6 5 10 10 H 1.08000 * 119.99591 * 268.69738 * 9 7 6 11 11 C 1.37871 * 119.99806 * 88.68966 * 9 7 6 12 12 N 1.31513 * 120.00378 * 353.60964 * 11 9 7 13 13 Si 1.86800 * 119.99888 * 173.33031 * 11 9 7 14 14 H 1.48506 * 109.47172 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47131 * 119.99883 * 13 11 9 16 16 H 1.48502 * 109.47222 * 240.00356 * 13 11 9 17 17 N 1.46958 * 109.48995 * 239.94701 * 2 1 3 18 18 C 1.46903 * 111.00072 * 63.22254 * 17 2 1 19 19 C 1.53000 * 117.49976 * 119.94754 * 18 17 2 20 20 C 1.52997 * 117.49619 * 51.28588 * 18 17 2 21 21 H 1.08998 * 109.46772 * 299.94481 * 1 2 3 22 22 H 1.09004 * 109.46712 * 59.94305 * 1 2 3 23 23 H 1.09001 * 109.46971 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.48725 * 301.59849 * 4 2 1 25 25 H 1.08993 * 109.49142 * 181.53338 * 4 2 1 26 26 H 1.00901 * 110.99704 * 295.45474 * 5 4 2 27 27 H 1.09002 * 109.48436 * 180.71134 * 6 5 4 28 28 H 1.08998 * 109.48382 * 60.65011 * 6 5 4 29 29 H 0.96999 * 120.00161 * 354.26771 * 12 11 9 30 30 H 1.09003 * 115.54538 * 265.62179 * 18 17 2 31 31 H 1.08998 * 117.49649 * 0.02562 * 19 18 17 32 32 H 1.09001 * 117.49632 * 145.02226 * 19 18 17 33 33 H 1.08999 * 117.49735 * 214.97875 * 20 18 17 34 34 H 1.08996 * 117.50073 * 0.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0406 -0.7227 1.2488 5 7 1.5809 -2.1183 1.2264 6 6 2.0711 -2.8121 0.0272 7 6 1.5605 -2.0894 -1.2215 8 1 0.4709 -2.1135 -1.2357 9 6 2.0945 -2.7750 -2.4528 10 1 3.0265 -2.4494 -2.8908 11 6 1.3933 -3.8179 -3.0200 12 7 0.3266 -4.2972 -2.4184 13 14 1.9540 -4.5449 -4.6468 14 1 3.1678 -3.8297 -5.1165 15 1 2.2683 -5.9846 -4.4635 16 1 0.8721 -4.3986 -5.6535 17 7 2.0203 -0.6938 -1.1991 18 6 1.6135 0.0142 -2.4203 19 6 2.7217 0.5207 -3.3457 20 6 1.9155 1.5118 -2.5024 21 1 -0.3633 0.5130 0.8905 22 1 -0.3633 0.5147 -0.8895 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6544 -0.2269 2.1393 25 1 3.1302 -0.6990 1.2627 26 1 0.5750 -2.1687 1.2874 27 1 1.7071 -3.8395 0.0272 28 1 3.1611 -2.8121 0.0273 29 1 0.0806 -3.9747 -1.5373 30 1 0.6929 -0.3398 -2.8843 31 1 3.7525 0.3282 -3.0486 32 1 2.5299 0.5003 -4.4185 33 1 1.1938 2.1431 -3.0209 34 1 2.4164 1.9717 -1.6506 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218965987.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:51 Heat of formation + Delta-G solvation = 11.667009 kcal Electronic energy + Delta-G solvation = -15024.170346 eV Core-core repulsion = 12763.674819 eV Total energy + Delta-G solvation = -2260.495528 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.84835 -37.47566 -35.45849 -33.51306 -32.10245 -28.31594 -26.97563 -25.40765 -23.70515 -22.83867 -21.96668 -20.00384 -18.97103 -17.37004 -16.44446 -16.17179 -16.01765 -15.66197 -15.23766 -15.03172 -14.10744 -13.86108 -13.81015 -13.17152 -12.82196 -12.68826 -12.62633 -12.34715 -12.29985 -12.05211 -11.95949 -11.70795 -11.26446 -10.90069 -10.72647 -10.59872 -9.32368 -8.91341 -8.57515 -6.28394 1.51262 1.58408 1.76048 2.54680 2.95389 3.03324 3.24580 3.45115 4.04743 4.07548 4.10995 4.14726 4.31064 4.39270 4.56178 4.61067 4.65490 4.70493 4.77615 4.87627 4.89305 4.99313 5.01687 5.12916 5.16096 5.33479 5.45303 5.79547 6.07378 6.15597 6.40199 6.49128 6.56361 6.79287 7.48571 8.78143 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.028346 B = 0.013911 C = 0.010564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.570241 B = 2012.353253 C = 2650.000096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.038 3.962 3 H 0.095 0.905 4 C 0.069 3.931 5 N -0.691 5.691 6 C 0.082 3.918 7 C 0.178 3.822 8 H -0.019 1.019 9 C -0.576 4.576 10 H 0.043 0.957 11 C -0.027 4.027 12 N -0.939 5.939 13 Si 1.112 2.888 14 H -0.274 1.274 15 H -0.282 1.282 16 H -0.283 1.283 17 N -0.503 5.503 18 C 0.024 3.976 19 C -0.165 4.165 20 C -0.158 4.158 21 H 0.082 0.918 22 H 0.047 0.953 23 H 0.030 0.970 24 H 0.102 0.898 25 H 0.068 0.932 26 H 0.334 0.666 27 H 0.042 0.958 28 H 0.053 0.947 29 H 0.257 0.743 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.790 10.314 3.089 10.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.072 4.072 3 H 0.113 0.887 4 C -0.061 4.061 5 N -0.319 5.319 6 C -0.048 4.048 7 C 0.069 3.931 8 H -0.001 1.001 9 C -0.615 4.615 10 H 0.062 0.938 11 C -0.226 4.226 12 N -0.577 5.577 13 Si 0.935 3.065 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.209 1.209 17 N -0.227 5.227 18 C -0.085 4.085 19 C -0.203 4.203 20 C -0.196 4.196 21 H 0.101 0.899 22 H 0.066 0.934 23 H 0.049 0.951 24 H 0.120 0.880 25 H 0.087 0.913 26 H 0.151 0.849 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.125 0.875 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.445 8.967 2.393 9.597 hybrid contribution -1.251 1.023 0.261 1.637 sum 1.193 9.990 2.654 10.405 Atomic orbital electron populations 1.22330 0.97746 1.00635 1.02433 1.22596 0.93111 0.99433 0.92071 0.88669 1.22143 1.00587 0.87292 0.96089 1.60850 1.16126 1.15084 1.39878 1.21988 0.99067 0.96196 0.87597 1.19887 0.92115 0.85847 0.95246 1.00108 1.22049 1.09275 1.17550 1.12644 0.93839 1.27026 0.93858 0.95304 1.06364 1.70863 1.26587 1.44291 1.16000 0.82987 0.75740 0.75751 0.72000 1.19906 1.20800 1.20917 1.62160 1.58331 1.02036 1.00201 1.21852 0.97188 0.94576 0.94905 1.22928 0.97032 1.03415 0.96902 1.23168 1.03156 0.90609 1.02642 0.89925 0.93430 0.95083 0.88007 0.91315 0.84905 0.93937 0.92817 0.93303 0.93372 0.89622 0.88999 0.87545 0.87759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.54 8.31 71.98 0.60 -4.95 16 2 C 0.04 1.25 2.76 44.92 0.12 1.37 16 3 H 0.10 2.76 6.54 -2.39 -0.02 2.74 16 4 C 0.07 2.18 6.21 86.31 0.54 2.71 16 5 N -0.69 -25.97 6.83 -513.45 -3.51 -29.47 16 6 C 0.08 3.79 5.91 86.31 0.51 4.30 16 7 C 0.18 8.74 1.13 44.17 0.05 8.79 16 8 H -0.02 -1.02 5.17 -2.39 -0.01 -1.03 16 9 C -0.58 -31.84 7.56 25.60 0.19 -31.65 16 10 H 0.04 2.48 7.82 -2.91 -0.02 2.46 16 11 C -0.03 -1.54 5.45 84.65 0.46 -1.07 16 12 N -0.94 -56.54 13.55 21.44 0.29 -56.25 16 13 Si 1.11 50.89 29.91 68.60 2.05 52.94 16 14 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 15 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 16 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 17 N -0.50 -20.96 4.63 -824.81 -3.82 -24.78 16 18 C 0.02 0.95 3.21 44.91 0.14 1.10 16 19 C -0.16 -5.75 10.46 30.62 0.32 -5.43 16 20 C -0.16 -4.66 9.71 30.62 0.30 -4.36 16 21 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 22 H 0.05 1.57 7.30 -2.39 -0.02 1.55 16 23 H 0.03 1.15 5.10 -2.39 -0.01 1.14 16 24 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 25 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.33 12.22 7.27 -89.69 -0.65 11.56 16 27 H 0.04 2.16 7.70 -2.39 -0.02 2.14 16 28 H 0.05 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.26 15.57 6.39 -92.71 -0.59 14.98 16 30 H 0.05 2.23 8.04 -2.39 -0.02 2.22 16 31 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 32 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 33 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 34 H 0.10 2.78 6.96 -2.39 -0.02 2.76 16 Total: -1.00 -61.84 262.23 -1.14 -62.99 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 0.61 Total: 23.77 kcal Atomic # 6 Polarization: -32.42 SS G_CDS: 3.23 Total: -29.19 kcal Atomic # 7 Polarization: -103.47 SS G_CDS: -7.04 Total: -110.50 kcal Atomic # 14 Polarization: 50.89 SS G_CDS: 2.05 Total: 52.94 kcal Total: -61.84 -1.14 -62.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218965987.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.653 kcal (2) G-P(sol) polarization free energy of solvation -61.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds