Wall clock time and date at job start Mon Mar 30 2020 03:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50704 * 119.99518 * 2 1 4 4 N 1.46904 * 109.46759 * 125.00654 * 3 2 1 5 5 C 1.46956 * 110.99901 * 293.95056 * 4 3 2 6 6 H 1.09008 * 109.50836 * 63.21053 * 5 4 3 7 7 C 1.53005 * 109.48936 * 303.15955 * 5 4 3 8 8 C 1.53047 * 109.36680 * 183.18988 * 5 4 3 9 9 N 1.46953 * 109.36497 * 301.59896 * 8 5 4 10 10 C 1.46956 * 110.88107 * 59.32178 * 9 8 5 11 11 C 1.46953 * 111.00345 * 57.75020 * 4 3 2 12 12 H 1.09001 * 109.49100 * 296.78280 * 11 4 3 13 13 C 1.50704 * 109.48838 * 56.84731 * 11 4 3 14 14 H 1.07999 * 119.99796 * 359.88370 * 13 11 4 15 15 C 1.37873 * 120.00193 * 179.89511 * 13 11 4 16 16 N 1.31522 * 119.99894 * 359.97438 * 15 13 11 17 17 Si 1.86795 * 120.00274 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47669 * 89.99612 * 17 15 13 19 19 H 1.48504 * 109.47242 * 209.99857 * 17 15 13 20 20 H 1.48500 * 109.47016 * 329.99326 * 17 15 13 21 21 H 1.08000 * 120.00013 * 179.97438 * 1 2 3 22 22 H 1.08003 * 120.00251 * 359.97438 * 1 2 3 23 23 H 1.07994 * 120.00484 * 180.02562 * 2 1 3 24 24 H 1.08996 * 109.47577 * 5.00320 * 3 2 1 25 25 H 1.09002 * 109.47430 * 244.99930 * 3 2 1 26 26 H 1.08993 * 109.46951 * 300.10679 * 7 5 4 27 27 H 1.08995 * 109.46977 * 60.10948 * 7 5 4 28 28 H 1.09000 * 109.46839 * 180.10655 * 7 5 4 29 29 H 1.09002 * 109.49280 * 181.63307 * 8 5 4 30 30 H 1.09001 * 109.50536 * 61.57959 * 8 5 4 31 31 H 1.00899 * 111.00150 * 183.18465 * 9 8 5 32 32 H 1.09002 * 109.48908 * 60.64267 * 10 9 8 33 33 H 1.09002 * 109.49369 * 180.71395 * 10 9 8 34 34 H 0.97001 * 119.99802 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0633 1.3052 0.0000 4 7 2.9962 1.3320 1.1345 5 6 2.2709 1.3470 2.4125 6 1 1.6963 0.4264 2.5158 7 6 1.3225 2.5472 2.4471 8 6 3.2735 1.4550 3.5638 9 7 4.2072 0.3218 3.5048 10 6 4.9326 0.3068 2.2268 11 6 3.9300 0.1988 1.0755 12 1 3.3746 -0.7350 1.1633 13 6 4.6683 0.2235 -0.2381 14 1 4.4632 1.0018 -0.9582 15 6 5.6053 -0.7476 -0.5207 16 7 5.8552 -1.6953 0.3564 17 14 6.5209 -0.7165 -2.1485 18 1 7.7614 0.0868 -2.0036 19 1 6.8731 -2.1037 -2.5449 20 1 5.6562 -0.1083 -3.1913 21 1 -0.5400 -0.9353 -0.0004 22 1 -0.5401 0.9353 0.0004 23 1 1.8500 -0.9352 -0.0004 24 1 1.3584 2.1317 0.0896 25 1 2.6212 1.4028 -0.9314 26 1 1.8972 3.4674 2.3431 27 1 0.6087 2.4699 1.6271 28 1 0.7861 2.5591 3.3959 29 1 2.7396 1.4372 4.5139 30 1 3.8289 2.3889 3.4763 31 1 4.8480 0.3403 4.2840 32 1 5.5068 1.2276 2.1238 33 1 5.6082 -0.5482 2.2021 34 1 6.5142 -2.3787 0.1574 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218966107.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:00 Heat of formation + Delta-G solvation = 32.497931 kcal Electronic energy + Delta-G solvation = -14845.501708 eV Core-core repulsion = 12585.909477 eV Total energy + Delta-G solvation = -2259.592231 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.67368 -34.68912 -33.33110 -31.87625 -30.73622 -26.99914 -25.60608 -25.00693 -22.11796 -20.82245 -19.75268 -17.94141 -16.38772 -15.47545 -15.17038 -14.45976 -14.19209 -13.97383 -13.44557 -13.08082 -12.58231 -12.46818 -11.76220 -11.65872 -11.40418 -11.02762 -10.92582 -10.78923 -10.63724 -10.35031 -10.08369 -10.03974 -9.43781 -9.10239 -8.62339 -8.47629 -7.58274 -7.09868 -6.03875 -4.08725 2.87194 3.29488 3.36302 3.39390 4.38659 5.00499 5.07907 5.30358 5.48516 5.64619 5.76007 5.84849 5.90169 6.04786 6.11492 6.18485 6.34718 6.45343 6.54253 6.64171 6.74281 6.85625 6.99431 7.22685 7.27234 7.45583 7.63804 7.77396 7.92074 8.14692 8.22479 8.36891 8.63310 8.99267 9.56600 11.02655 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.029686 B = 0.012568 C = 0.009970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.966422 B = 2227.413657 C = 2807.880093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.151 4.151 3 C 0.085 3.915 4 N -0.526 5.526 5 C 0.080 3.920 6 H 0.039 0.961 7 C -0.143 4.143 8 C 0.069 3.931 9 N -0.698 5.698 10 C 0.065 3.935 11 C 0.221 3.779 12 H 0.013 0.987 13 C -0.506 4.506 14 H 0.064 0.936 15 C 0.061 3.939 16 N -0.890 5.890 17 Si 0.896 3.104 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 H 0.086 0.914 22 H 0.087 0.913 23 H 0.114 0.886 24 H 0.061 0.939 25 H 0.089 0.911 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.026 0.974 31 H 0.324 0.676 32 H 0.011 0.989 33 H 0.106 0.894 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.170 4.898 2.948 8.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.170 4.170 3 C -0.043 4.043 4 N -0.250 5.250 5 C -0.029 4.029 6 H 0.057 0.943 7 C -0.201 4.201 8 C -0.062 4.062 9 N -0.328 5.328 10 C -0.064 4.064 11 C 0.115 3.885 12 H 0.031 0.969 13 C -0.545 4.545 14 H 0.082 0.918 15 C -0.141 4.141 16 N -0.529 5.529 17 Si 0.724 3.276 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 H 0.104 0.896 22 H 0.105 0.895 23 H 0.132 0.868 24 H 0.079 0.921 25 H 0.107 0.893 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.044 0.956 31 H 0.140 0.860 32 H 0.030 0.970 33 H 0.124 0.876 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.225 4.727 2.735 8.281 hybrid contribution 0.720 -0.150 -0.636 0.972 sum -5.505 4.577 2.099 7.461 Atomic orbital electron populations 1.23613 0.95975 1.00537 1.05840 1.23935 0.96049 1.01718 0.95346 1.21326 0.93869 0.92541 0.96580 1.62531 1.16066 1.46870 0.99565 1.21532 0.93669 0.96668 0.91024 0.94267 1.21865 0.98880 0.98662 1.00717 1.21902 0.94822 0.92514 0.96915 1.60712 1.22634 1.43426 1.06024 1.22339 0.96958 1.00667 0.86387 1.19258 0.88842 0.86742 0.93662 0.96929 1.21139 1.21364 1.10984 1.00975 0.91821 1.24949 0.96865 0.95279 0.97016 1.69887 1.34019 1.14422 1.34591 0.86530 0.80114 0.77109 0.83862 1.20713 1.21314 1.19902 0.89600 0.89506 0.86793 0.92088 0.89268 0.92409 0.92609 0.93190 0.92274 0.95551 0.85981 0.97044 0.87575 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.61 14.32 29.02 0.42 -3.20 16 2 C -0.15 -2.92 7.78 -36.02 -0.28 -3.20 16 3 C 0.08 1.67 5.14 -4.97 -0.03 1.65 16 4 N -0.53 -11.44 4.54 -221.36 -1.01 -12.44 16 5 C 0.08 1.54 2.28 -67.65 -0.15 1.38 16 6 H 0.04 0.82 7.39 -51.92 -0.38 0.44 16 7 C -0.14 -2.21 8.87 37.16 0.33 -1.88 16 8 C 0.07 1.27 6.00 -3.77 -0.02 1.25 16 9 N -0.70 -14.53 6.90 -113.64 -0.78 -15.31 16 10 C 0.07 1.59 5.75 -3.76 -0.02 1.57 16 11 C 0.22 5.57 1.51 -68.80 -0.10 5.46 16 12 H 0.01 0.37 6.50 -51.93 -0.34 0.03 16 13 C -0.51 -13.58 7.96 -34.44 -0.27 -13.86 16 14 H 0.06 1.71 6.45 -52.49 -0.34 1.37 16 15 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 16 N -0.89 -24.97 11.34 55.43 0.63 -24.35 16 17 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 H 0.09 1.30 8.06 -52.49 -0.42 0.87 16 22 H 0.09 1.27 7.84 -52.48 -0.41 0.85 16 23 H 0.11 2.53 6.80 -52.49 -0.36 2.17 16 24 H 0.06 1.06 5.57 -51.93 -0.29 0.77 16 25 H 0.09 1.89 6.36 -51.93 -0.33 1.56 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.05 0.83 6.23 -51.93 -0.32 0.51 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.32 5.92 8.90 -39.29 -0.35 5.57 16 32 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.11 2.85 6.12 -51.93 -0.32 2.53 16 34 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 263.82 15.07 3.98 3.98 Total: -1.00 -27.78 263.82 -7.55 -35.33 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -5.11 Total: 6.00 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -0.23 Total: -9.27 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: -1.16 Total: -52.10 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -27.78 -7.55 -35.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218966107.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.829 kcal (2) G-P(sol) polarization free energy of solvation -27.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds