Wall clock time and date at job start Mon Mar 30 2020 03:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50704 * 119.99518 * 2 1 4 4 N 1.46904 * 109.46759 * 125.00654 * 3 2 1 5 5 C 1.46956 * 110.99901 * 293.95056 * 4 3 2 6 6 H 1.09008 * 109.50836 * 63.21053 * 5 4 3 7 7 C 1.53005 * 109.48936 * 303.15955 * 5 4 3 8 8 C 1.53047 * 109.36680 * 183.18988 * 5 4 3 9 9 N 1.46953 * 109.36497 * 301.59896 * 8 5 4 10 10 C 1.46956 * 110.88107 * 59.32178 * 9 8 5 11 11 C 1.46953 * 111.00345 * 57.75020 * 4 3 2 12 12 H 1.09001 * 109.49100 * 296.78280 * 11 4 3 13 13 C 1.50704 * 109.48838 * 56.84731 * 11 4 3 14 14 H 1.07999 * 119.99796 * 359.88370 * 13 11 4 15 15 C 1.37873 * 120.00193 * 179.89511 * 13 11 4 16 16 N 1.31522 * 119.99894 * 359.97438 * 15 13 11 17 17 Si 1.86795 * 120.00274 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47669 * 89.99612 * 17 15 13 19 19 H 1.48504 * 109.47242 * 209.99857 * 17 15 13 20 20 H 1.48500 * 109.47016 * 329.99326 * 17 15 13 21 21 H 1.08000 * 120.00013 * 179.97438 * 1 2 3 22 22 H 1.08003 * 120.00251 * 359.97438 * 1 2 3 23 23 H 1.07994 * 120.00484 * 180.02562 * 2 1 3 24 24 H 1.08996 * 109.47577 * 5.00320 * 3 2 1 25 25 H 1.09002 * 109.47430 * 244.99930 * 3 2 1 26 26 H 1.08993 * 109.46951 * 300.10679 * 7 5 4 27 27 H 1.08995 * 109.46977 * 60.10948 * 7 5 4 28 28 H 1.09000 * 109.46839 * 180.10655 * 7 5 4 29 29 H 1.09002 * 109.49280 * 181.63307 * 8 5 4 30 30 H 1.09001 * 109.50536 * 61.57959 * 8 5 4 31 31 H 1.00899 * 111.00150 * 183.18465 * 9 8 5 32 32 H 1.09002 * 109.48908 * 60.64267 * 10 9 8 33 33 H 1.09002 * 109.49369 * 180.71395 * 10 9 8 34 34 H 0.97001 * 119.99802 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0633 1.3052 0.0000 4 7 2.9962 1.3320 1.1345 5 6 2.2709 1.3470 2.4125 6 1 1.6963 0.4264 2.5158 7 6 1.3225 2.5472 2.4471 8 6 3.2735 1.4550 3.5638 9 7 4.2072 0.3218 3.5048 10 6 4.9326 0.3068 2.2268 11 6 3.9300 0.1988 1.0755 12 1 3.3746 -0.7350 1.1633 13 6 4.6683 0.2235 -0.2381 14 1 4.4632 1.0018 -0.9582 15 6 5.6053 -0.7476 -0.5207 16 7 5.8552 -1.6953 0.3564 17 14 6.5209 -0.7165 -2.1485 18 1 7.7614 0.0868 -2.0036 19 1 6.8731 -2.1037 -2.5449 20 1 5.6562 -0.1083 -3.1913 21 1 -0.5400 -0.9353 -0.0004 22 1 -0.5401 0.9353 0.0004 23 1 1.8500 -0.9352 -0.0004 24 1 1.3584 2.1317 0.0896 25 1 2.6212 1.4028 -0.9314 26 1 1.8972 3.4674 2.3431 27 1 0.6087 2.4699 1.6271 28 1 0.7861 2.5591 3.3959 29 1 2.7396 1.4372 4.5139 30 1 3.8289 2.3889 3.4763 31 1 4.8480 0.3403 4.2840 32 1 5.5068 1.2276 2.1238 33 1 5.6082 -0.5482 2.2021 34 1 6.5142 -2.3787 0.1574 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218966107.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:00 Heat of formation + Delta-G solvation = 11.945095 kcal Electronic energy + Delta-G solvation = -14846.392946 eV Core-core repulsion = 12585.909477 eV Total energy + Delta-G solvation = -2260.483469 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.33358 -36.29753 -35.26103 -33.42200 -32.49308 -28.72111 -27.15126 -26.86453 -23.81197 -22.56168 -21.30561 -19.57605 -18.35330 -17.30375 -16.82183 -16.13232 -15.77712 -15.73392 -15.14550 -14.67722 -14.33468 -14.02861 -13.47719 -13.04041 -12.94936 -12.78119 -12.58787 -12.48317 -12.31394 -11.99009 -11.96369 -11.75433 -11.15043 -10.93137 -10.55224 -10.14933 -9.28895 -8.85549 -8.11662 -6.23544 1.41031 1.41746 1.44565 1.51957 2.41284 3.14104 3.40633 3.56387 4.02802 4.22776 4.28698 4.41665 4.43832 4.63635 4.69712 4.79211 4.85164 4.96777 5.00907 5.08403 5.14747 5.22263 5.36520 5.51611 5.66768 5.72459 5.78922 5.89757 6.09459 6.29872 6.40585 6.69434 6.81957 6.92793 7.45708 8.94053 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.029686 B = 0.012568 C = 0.009970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.966422 B = 2227.413657 C = 2807.880093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.186 4.186 3 C 0.089 3.911 4 N -0.534 5.534 5 C 0.076 3.924 6 H 0.020 0.980 7 C -0.133 4.133 8 C 0.067 3.933 9 N -0.704 5.704 10 C 0.078 3.922 11 C 0.232 3.768 12 H -0.029 1.029 13 C -0.519 4.519 14 H 0.058 0.942 15 C 0.014 3.986 16 N -0.918 5.918 17 Si 0.958 3.042 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.269 1.269 21 H 0.099 0.901 22 H 0.117 0.883 23 H 0.072 0.928 24 H 0.093 0.907 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.028 0.972 31 H 0.339 0.661 32 H -0.003 1.003 33 H 0.076 0.924 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.774 6.389 3.163 10.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.206 4.206 3 C -0.038 4.038 4 N -0.258 5.258 5 C -0.033 4.033 6 H 0.038 0.962 7 C -0.191 4.191 8 C -0.062 4.062 9 N -0.335 5.335 10 C -0.051 4.051 11 C 0.124 3.876 12 H -0.011 1.011 13 C -0.557 4.557 14 H 0.076 0.924 15 C -0.185 4.185 16 N -0.557 5.557 17 Si 0.784 3.216 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.193 1.193 21 H 0.118 0.882 22 H 0.135 0.865 23 H 0.090 0.910 24 H 0.111 0.889 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.111 0.889 30 H 0.046 0.954 31 H 0.157 0.843 32 H 0.015 0.985 33 H 0.094 0.906 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.844 6.234 2.963 10.448 hybrid contribution 1.110 -0.626 -0.657 1.433 sum -6.735 5.607 2.306 9.062 Atomic orbital electron populations 1.23877 0.94587 1.02570 1.00759 1.23576 0.97121 0.99790 1.00103 1.21288 0.93817 0.93849 0.94884 1.62491 1.17031 1.44695 1.01604 1.21696 0.94081 0.97739 0.89770 0.96231 1.21795 0.98138 0.96527 1.02629 1.22056 0.94353 0.91413 0.98426 1.60613 1.22878 1.45096 1.04924 1.21957 0.96465 0.98473 0.88250 1.18932 0.89117 0.86302 0.93234 1.01120 1.21394 1.21604 1.10870 1.01872 0.92352 1.25704 0.97691 0.94953 1.00173 1.70025 1.34534 1.14966 1.36208 0.85557 0.78907 0.77120 0.80065 1.20131 1.21033 1.19338 0.88229 0.86498 0.91022 0.88932 0.91692 0.92063 0.91846 0.90421 0.88869 0.95381 0.84335 0.98461 0.90561 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.40 14.32 67.79 0.97 -4.43 16 2 C -0.19 -7.21 7.78 25.66 0.20 -7.01 16 3 C 0.09 3.49 5.14 85.56 0.44 3.93 16 4 N -0.53 -23.26 4.54 -854.26 -3.88 -27.14 16 5 C 0.08 2.80 2.28 44.92 0.10 2.90 16 6 H 0.02 0.80 7.39 -2.38 -0.02 0.79 16 7 C -0.13 -3.61 8.87 71.98 0.64 -2.97 16 8 C 0.07 2.36 6.00 86.31 0.52 2.88 16 9 N -0.70 -29.26 6.90 -513.43 -3.54 -32.81 16 10 C 0.08 3.94 5.75 86.31 0.50 4.44 16 11 C 0.23 12.09 1.51 44.18 0.07 12.16 16 12 H -0.03 -1.71 6.50 -2.39 -0.02 -1.73 16 13 C -0.52 -28.85 7.96 25.60 0.20 -28.65 16 14 H 0.06 3.23 6.45 -2.91 -0.02 3.21 16 15 C 0.01 0.77 5.30 84.65 0.45 1.22 16 16 N -0.92 -53.42 11.34 21.45 0.24 -53.18 16 17 Si 0.96 44.10 29.54 68.60 2.03 46.13 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 19 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 H 0.10 2.73 8.06 -2.91 -0.02 2.70 16 22 H 0.12 2.85 7.84 -2.91 -0.02 2.83 16 23 H 0.07 3.38 6.80 -2.91 -0.02 3.36 16 24 H 0.09 2.98 5.57 -2.39 -0.01 2.97 16 25 H 0.06 2.81 6.36 -2.39 -0.02 2.79 16 26 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.06 1.61 6.23 -2.39 -0.01 1.60 16 28 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 30 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.34 12.21 8.90 -89.69 -0.80 11.41 16 32 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 33 H 0.08 4.29 6.12 -2.39 -0.01 4.27 16 34 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -62.27 263.82 -0.79 -63.06 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 0.28 Total: 19.47 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: 4.09 Total: -15.54 kcal Atomic # 7 Polarization: -105.95 SS G_CDS: -7.18 Total: -113.13 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -62.27 -0.79 -63.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218966107.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.009 kcal (2) G-P(sol) polarization free energy of solvation -62.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds