Wall clock time and date at job start Mon Mar 30 2020 03:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 120.00207 * 2 1 4 4 N 1.46910 * 109.47023 * 124.99923 * 3 2 1 5 5 C 1.46955 * 111.00018 * 293.80168 * 4 3 2 6 6 H 1.08998 * 109.49255 * 56.84303 * 5 4 3 7 7 C 1.53000 * 109.50569 * 296.78813 * 5 4 3 8 8 C 1.53051 * 109.36244 * 176.80768 * 5 4 3 9 9 N 1.46962 * 109.36207 * 58.40199 * 8 5 4 10 10 C 1.46954 * 110.88012 * 300.67999 * 9 8 5 11 11 C 1.46949 * 110.99732 * 169.99961 * 4 3 2 12 12 H 1.09003 * 109.50876 * 63.21467 * 11 4 3 13 13 C 1.50706 * 109.49214 * 303.15584 * 11 4 3 14 14 H 1.07999 * 119.99515 * 0.11687 * 13 11 4 15 15 C 1.37870 * 120.00176 * 180.11153 * 13 11 4 16 16 N 1.31520 * 119.99883 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 120.00043 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47216 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47389 * 119.99848 * 17 15 13 20 20 H 1.48501 * 109.47057 * 239.99829 * 17 15 13 21 21 H 1.07993 * 120.00725 * 180.02562 * 1 2 3 22 22 H 1.08004 * 119.99617 * 359.97438 * 1 2 3 23 23 H 1.08004 * 119.99617 * 180.02562 * 2 1 3 24 24 H 1.09004 * 109.47333 * 5.00829 * 3 2 1 25 25 H 1.08993 * 109.47186 * 244.99883 * 3 2 1 26 26 H 1.08996 * 109.46935 * 300.10053 * 7 5 4 27 27 H 1.09000 * 109.47265 * 60.09807 * 7 5 4 28 28 H 1.08996 * 109.46616 * 180.10252 * 7 5 4 29 29 H 1.08994 * 109.49131 * 298.43557 * 8 5 4 30 30 H 1.09001 * 109.50886 * 178.37370 * 8 5 4 31 31 H 1.00900 * 111.00006 * 176.81430 * 9 8 5 32 32 H 1.09004 * 109.48759 * 299.35168 * 10 9 8 33 33 H 1.08998 * 109.49067 * 179.28841 * 10 9 8 34 34 H 0.97004 * 119.99507 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9964 1.3319 1.1346 5 6 2.2710 1.3506 2.4125 6 1 1.6083 0.4870 2.4672 7 6 1.4453 2.6348 2.5124 8 6 3.2748 1.2979 3.5666 9 7 4.1915 2.4423 3.4678 10 6 4.9168 2.4235 2.1899 11 6 3.9130 2.4762 1.0357 12 1 3.3440 3.4042 1.0908 13 6 4.6520 2.4167 -0.2764 14 1 4.4588 1.6106 -0.9687 15 6 5.5745 3.3911 -0.5928 16 7 5.8100 4.3724 0.2506 17 14 6.4899 3.3177 -2.2195 18 1 6.0474 2.1235 -2.9831 19 1 6.2009 4.5437 -3.0060 20 1 7.9497 3.2272 -1.9624 21 1 -0.5401 -0.9352 0.0004 22 1 -0.5400 0.9354 0.0004 23 1 1.8500 -0.9354 -0.0004 24 1 1.3587 2.1317 0.0897 25 1 2.6213 1.4025 -0.9313 26 1 2.1082 3.4982 2.4568 27 1 0.7305 2.6721 1.6903 28 1 0.9089 2.6489 3.4611 29 1 3.8441 0.3701 3.5113 30 1 2.7407 1.3408 4.5159 31 1 4.8323 2.4606 4.2470 32 1 5.5049 1.5084 2.1189 33 1 5.5796 3.2871 2.1351 34 1 6.4588 5.0583 0.0277 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218966178.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:07 Heat of formation + Delta-G solvation = 33.430275 kcal Electronic energy + Delta-G solvation = -14812.573631 eV Core-core repulsion = 12553.021829 eV Total energy + Delta-G solvation = -2259.551802 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.74178 -34.70956 -33.21459 -31.99308 -30.40941 -27.16783 -25.53708 -24.95561 -22.23627 -21.47573 -19.11359 -17.65112 -16.80396 -15.56864 -14.94803 -14.47447 -13.93214 -13.67844 -13.43339 -13.32222 -13.05417 -12.25665 -12.01337 -11.58763 -11.14384 -11.04337 -10.96271 -10.69262 -10.58262 -10.32668 -10.09813 -10.01624 -9.43473 -9.12280 -8.71300 -8.47713 -7.56068 -7.06336 -6.04765 -4.09518 2.70815 3.27857 3.36178 3.40448 4.38455 5.01967 5.12145 5.33574 5.48248 5.57996 5.67836 5.89004 5.96199 6.13611 6.17906 6.31404 6.39551 6.45704 6.58926 6.69493 6.83073 6.90550 7.04505 7.06604 7.15844 7.43069 7.67134 7.76689 7.93060 8.15348 8.22583 8.37958 8.63657 8.98932 9.55804 11.01723 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.028326 B = 0.012539 C = 0.009495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.269738 B = 2232.530244 C = 2948.156487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.121 4.121 3 C 0.078 3.922 4 N -0.527 5.527 5 C 0.083 3.917 6 H 0.066 0.934 7 C -0.174 4.174 8 C 0.068 3.932 9 N -0.694 5.694 10 C 0.067 3.933 11 C 0.220 3.780 12 H 0.015 0.985 13 C -0.509 4.509 14 H 0.065 0.935 15 C 0.061 3.939 16 N -0.889 5.889 17 Si 0.896 3.104 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.284 1.284 21 H 0.089 0.911 22 H 0.090 0.910 23 H 0.106 0.894 24 H 0.031 0.969 25 H 0.096 0.904 26 H 0.075 0.925 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.025 0.975 30 H 0.059 0.941 31 H 0.324 0.676 32 H 0.011 0.989 33 H 0.106 0.894 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.944 -5.086 3.136 8.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.140 4.140 3 C -0.049 4.049 4 N -0.252 5.252 5 C -0.027 4.027 6 H 0.084 0.916 7 C -0.232 4.232 8 C -0.062 4.062 9 N -0.324 5.324 10 C -0.061 4.061 11 C 0.113 3.887 12 H 0.032 0.968 13 C -0.548 4.548 14 H 0.083 0.917 15 C -0.141 4.141 16 N -0.528 5.528 17 Si 0.724 3.276 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.210 1.210 21 H 0.107 0.893 22 H 0.108 0.892 23 H 0.124 0.876 24 H 0.049 0.951 25 H 0.114 0.886 26 H 0.094 0.906 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.043 0.957 30 H 0.078 0.922 31 H 0.139 0.861 32 H 0.029 0.971 33 H 0.124 0.876 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.011 -4.908 2.900 8.284 hybrid contribution 0.683 -0.040 -0.619 0.922 sum -5.328 -4.948 2.281 7.621 Atomic orbital electron populations 1.23682 0.96003 1.00930 1.05162 1.23168 0.95363 0.99552 0.95882 1.21227 0.94209 0.92496 0.96990 1.62403 1.17033 1.46377 0.99366 1.21620 0.93824 0.96267 0.90940 0.91571 1.22292 1.00070 1.01088 0.99785 1.21879 0.95029 0.92368 0.96938 1.60715 1.23364 1.42568 1.05762 1.22303 0.96735 1.00747 0.86338 1.19269 0.89100 0.86714 0.93603 0.96774 1.21216 1.22192 1.09459 1.01936 0.91716 1.24954 0.96823 0.95216 0.97111 1.69895 1.34650 1.12896 1.35364 0.86475 0.79569 0.77915 0.83679 1.19733 1.21078 1.21037 0.89255 0.89194 0.87621 0.95129 0.88600 0.90585 0.93809 0.93797 0.95679 0.92233 0.86067 0.97086 0.87608 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.18 14.32 29.01 0.42 -2.76 16 2 C -0.12 -2.02 8.58 -36.03 -0.31 -2.33 16 3 C 0.08 1.56 5.01 -4.97 -0.02 1.54 16 4 N -0.53 -11.48 4.46 -221.37 -0.99 -12.46 16 5 C 0.08 1.58 2.80 -67.66 -0.19 1.40 16 6 H 0.07 1.18 7.20 -51.93 -0.37 0.81 16 7 C -0.17 -3.23 8.38 37.16 0.31 -2.92 16 8 C 0.07 1.25 6.15 -3.76 -0.02 1.23 16 9 N -0.69 -14.09 6.22 -113.63 -0.71 -14.80 16 10 C 0.07 1.63 5.75 -3.77 -0.02 1.61 16 11 C 0.22 5.51 1.57 -68.81 -0.11 5.40 16 12 H 0.01 0.41 6.35 -51.93 -0.33 0.08 16 13 C -0.51 -13.73 7.80 -34.44 -0.27 -14.00 16 14 H 0.06 1.75 6.51 -52.49 -0.34 1.41 16 15 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 16 N -0.89 -24.90 11.34 55.43 0.63 -24.27 16 17 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H 0.09 1.11 8.06 -52.49 -0.42 0.69 16 22 H 0.09 1.28 7.84 -52.48 -0.41 0.87 16 23 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 24 H 0.03 0.62 5.76 -51.93 -0.30 0.32 16 25 H 0.10 2.09 5.99 -51.93 -0.31 1.78 16 26 H 0.08 1.64 5.94 -51.93 -0.31 1.33 16 27 H 0.04 0.79 6.36 -51.93 -0.33 0.46 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.32 5.79 8.90 -39.29 -0.35 5.44 16 32 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.11 2.82 6.12 -51.93 -0.32 2.50 16 34 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 262.49 15.07 3.96 3.96 Total: -1.00 -27.52 262.49 -7.49 -35.00 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -5.04 Total: 5.85 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -0.31 Total: -9.29 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: -1.07 Total: -51.53 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -27.52 -7.49 -35.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218966178.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.433 kcal (2) G-P(sol) polarization free energy of solvation -27.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds