Wall clock time and date at job start Mon Mar 30 2020 03:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 120.00207 * 2 1 4 4 N 1.46910 * 109.47023 * 124.99923 * 3 2 1 5 5 C 1.46955 * 111.00018 * 293.80168 * 4 3 2 6 6 H 1.08998 * 109.49255 * 56.84303 * 5 4 3 7 7 C 1.53000 * 109.50569 * 296.78813 * 5 4 3 8 8 C 1.53051 * 109.36244 * 176.80768 * 5 4 3 9 9 N 1.46962 * 109.36207 * 58.40199 * 8 5 4 10 10 C 1.46954 * 110.88012 * 300.67999 * 9 8 5 11 11 C 1.46949 * 110.99732 * 169.99961 * 4 3 2 12 12 H 1.09003 * 109.50876 * 63.21467 * 11 4 3 13 13 C 1.50706 * 109.49214 * 303.15584 * 11 4 3 14 14 H 1.07999 * 119.99515 * 0.11687 * 13 11 4 15 15 C 1.37870 * 120.00176 * 180.11153 * 13 11 4 16 16 N 1.31520 * 119.99883 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 120.00043 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47216 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47389 * 119.99848 * 17 15 13 20 20 H 1.48501 * 109.47057 * 239.99829 * 17 15 13 21 21 H 1.07993 * 120.00725 * 180.02562 * 1 2 3 22 22 H 1.08004 * 119.99617 * 359.97438 * 1 2 3 23 23 H 1.08004 * 119.99617 * 180.02562 * 2 1 3 24 24 H 1.09004 * 109.47333 * 5.00829 * 3 2 1 25 25 H 1.08993 * 109.47186 * 244.99883 * 3 2 1 26 26 H 1.08996 * 109.46935 * 300.10053 * 7 5 4 27 27 H 1.09000 * 109.47265 * 60.09807 * 7 5 4 28 28 H 1.08996 * 109.46616 * 180.10252 * 7 5 4 29 29 H 1.08994 * 109.49131 * 298.43557 * 8 5 4 30 30 H 1.09001 * 109.50886 * 178.37370 * 8 5 4 31 31 H 1.00900 * 111.00006 * 176.81430 * 9 8 5 32 32 H 1.09004 * 109.48759 * 299.35168 * 10 9 8 33 33 H 1.08998 * 109.49067 * 179.28841 * 10 9 8 34 34 H 0.97004 * 119.99507 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9964 1.3319 1.1346 5 6 2.2710 1.3506 2.4125 6 1 1.6083 0.4870 2.4672 7 6 1.4453 2.6348 2.5124 8 6 3.2748 1.2979 3.5666 9 7 4.1915 2.4423 3.4678 10 6 4.9168 2.4235 2.1899 11 6 3.9130 2.4762 1.0357 12 1 3.3440 3.4042 1.0908 13 6 4.6520 2.4167 -0.2764 14 1 4.4588 1.6106 -0.9687 15 6 5.5745 3.3911 -0.5928 16 7 5.8100 4.3724 0.2506 17 14 6.4899 3.3177 -2.2195 18 1 6.0474 2.1235 -2.9831 19 1 6.2009 4.5437 -3.0060 20 1 7.9497 3.2272 -1.9624 21 1 -0.5401 -0.9352 0.0004 22 1 -0.5400 0.9354 0.0004 23 1 1.8500 -0.9354 -0.0004 24 1 1.3587 2.1317 0.0897 25 1 2.6213 1.4025 -0.9313 26 1 2.1082 3.4982 2.4568 27 1 0.7305 2.6721 1.6903 28 1 0.9089 2.6489 3.4611 29 1 3.8441 0.3701 3.5113 30 1 2.7407 1.3408 4.5159 31 1 4.8323 2.4606 4.2470 32 1 5.5049 1.5084 2.1189 33 1 5.5796 3.2871 2.1351 34 1 6.4588 5.0583 0.0277 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218966178.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:07 Heat of formation + Delta-G solvation = 13.683483 kcal Electronic energy + Delta-G solvation = -14813.429916 eV Core-core repulsion = 12553.021829 eV Total energy + Delta-G solvation = -2260.408087 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.41447 -36.23575 -35.19087 -33.46825 -32.22116 -28.86081 -27.24448 -26.72167 -23.88061 -23.27584 -20.46268 -19.37316 -18.69989 -17.42053 -16.56554 -16.20702 -15.64184 -15.28376 -15.01516 -14.97105 -14.59222 -14.09260 -13.62227 -13.17199 -12.89330 -12.79654 -12.63402 -12.35620 -12.19741 -12.07283 -11.94123 -11.66311 -11.16401 -10.89540 -10.56325 -10.12747 -9.24224 -8.81818 -8.12280 -6.24247 1.40046 1.42181 1.46499 1.53824 2.41329 3.13249 3.42218 3.60771 4.08915 4.16957 4.27361 4.40294 4.47993 4.70827 4.74442 4.77426 4.83805 4.90630 5.01409 5.05340 5.14425 5.23645 5.35209 5.52903 5.67463 5.75127 5.79143 5.94028 6.11791 6.31041 6.42202 6.71899 6.82712 6.92741 7.45065 8.93375 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.028326 B = 0.012539 C = 0.009495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.269738 B = 2232.530244 C = 2948.156487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.145 4.145 3 C 0.083 3.917 4 N -0.535 5.535 5 C 0.078 3.922 6 H 0.089 0.911 7 C -0.163 4.163 8 C 0.068 3.932 9 N -0.696 5.696 10 C 0.082 3.918 11 C 0.228 3.772 12 H -0.024 1.024 13 C -0.525 4.525 14 H 0.058 0.942 15 C 0.015 3.985 16 N -0.915 5.915 17 Si 0.958 3.042 18 H -0.269 1.269 19 H -0.281 1.281 20 H -0.280 1.280 21 H 0.120 0.880 22 H 0.092 0.908 23 H 0.110 0.890 24 H 0.024 0.976 25 H 0.067 0.933 26 H 0.040 0.960 27 H 0.044 0.956 28 H 0.071 0.929 29 H 0.024 0.976 30 H 0.095 0.905 31 H 0.339 0.661 32 H -0.005 1.005 33 H 0.076 0.924 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.265 -6.459 3.530 10.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.163 4.163 3 C -0.045 4.045 4 N -0.260 5.260 5 C -0.031 4.031 6 H 0.107 0.893 7 C -0.222 4.222 8 C -0.062 4.062 9 N -0.327 5.327 10 C -0.047 4.047 11 C 0.121 3.879 12 H -0.007 1.007 13 C -0.564 4.564 14 H 0.076 0.924 15 C -0.184 4.184 16 N -0.555 5.555 17 Si 0.784 3.216 18 H -0.193 1.193 19 H -0.207 1.207 20 H -0.205 1.205 21 H 0.138 0.862 22 H 0.111 0.889 23 H 0.128 0.872 24 H 0.042 0.958 25 H 0.085 0.915 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.043 0.957 30 H 0.114 0.886 31 H 0.156 0.844 32 H 0.013 0.987 33 H 0.095 0.905 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.345 -6.294 3.309 10.223 hybrid contribution 0.986 0.380 -0.704 1.270 sum -6.359 -5.914 2.605 9.066 Atomic orbital electron populations 1.23921 0.95023 1.02484 1.00904 1.22890 0.96022 0.97712 0.99711 1.21132 0.93624 0.94522 0.95192 1.62373 1.17971 1.44319 1.01292 1.21796 0.94217 0.97279 0.89760 0.89281 1.22168 0.99417 0.99284 1.01333 1.22011 0.94576 0.91299 0.98320 1.60604 1.23476 1.43977 1.04601 1.21895 0.96167 0.98477 0.88209 1.18979 0.89364 0.86344 0.93257 1.00654 1.21479 1.22614 1.09383 1.02933 0.92428 1.25701 0.97588 0.94882 1.00271 1.70025 1.35136 1.13416 1.36895 0.85498 0.78316 0.77951 0.79821 1.19303 1.20667 1.20537 0.86206 0.88919 0.87191 0.95821 0.91496 0.94132 0.93737 0.91002 0.95729 0.88644 0.84389 0.98652 0.90539 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.72 14.32 67.78 0.97 -3.75 16 2 C -0.14 -4.56 8.58 25.64 0.22 -4.34 16 3 C 0.08 3.33 5.01 85.55 0.43 3.75 16 4 N -0.54 -23.37 4.46 -854.29 -3.81 -27.18 16 5 C 0.08 2.86 2.80 44.92 0.13 2.98 16 6 H 0.09 2.88 7.20 -2.39 -0.02 2.87 16 7 C -0.16 -5.87 8.38 71.98 0.60 -5.26 16 8 C 0.07 2.33 6.15 86.31 0.53 2.86 16 9 N -0.70 -27.93 6.22 -513.43 -3.19 -31.13 16 10 C 0.08 4.08 5.75 86.31 0.50 4.57 16 11 C 0.23 11.81 1.57 44.18 0.07 11.87 16 12 H -0.02 -1.41 6.35 -2.39 -0.02 -1.42 16 13 C -0.53 -29.26 7.80 25.60 0.20 -29.06 16 14 H 0.06 3.22 6.51 -2.91 -0.02 3.20 16 15 C 0.01 0.82 5.30 84.65 0.45 1.27 16 16 N -0.92 -52.80 11.34 21.45 0.24 -52.55 16 17 Si 0.96 43.91 29.54 68.60 2.03 45.94 16 18 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 21 H 0.12 2.39 8.06 -2.91 -0.02 2.36 16 22 H 0.09 2.33 7.84 -2.91 -0.02 2.31 16 23 H 0.11 3.38 8.06 -2.91 -0.02 3.35 16 24 H 0.02 0.97 5.76 -2.39 -0.01 0.95 16 25 H 0.07 3.02 5.99 -2.39 -0.01 3.01 16 26 H 0.04 1.75 5.94 -2.39 -0.01 1.73 16 27 H 0.04 1.56 6.36 -2.39 -0.02 1.54 16 28 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.34 11.82 8.90 -89.69 -0.80 11.02 16 32 H 0.00 -0.25 8.14 -2.38 -0.02 -0.27 16 33 H 0.08 4.24 6.12 -2.39 -0.01 4.22 16 34 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -60.66 262.49 -0.36 -61.02 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.28 Total: 18.99 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: 4.09 Total: -15.09 kcal Atomic # 7 Polarization: -104.10 SS G_CDS: -6.76 Total: -110.86 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -60.66 -0.36 -61.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218966178.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.708 kcal (2) G-P(sol) polarization free energy of solvation -60.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds